public GroupComparisonSelector(PeptideGroupDocNode protein, PeptideDocNode peptide, IsotopeLabelType labelType,
int?msLevel, GroupIdentifier groupIdentifier)
{
Protein = protein;
Peptide = peptide;
LabelType = labelType;
MsLevel = msLevel;
GroupIdentifier = groupIdentifier;
}
public GroupIdentifier GetGroupIdentifier(SrmSettings settings, ChromatogramSet chromatogramSet)
{
AnnotationDef annotationDef =
settings.DataSettings.AnnotationDefs.FirstOrDefault(a => a.Name == ControlAnnotation);
if (annotationDef == null)
{
return(default(GroupIdentifier));
}
return(GroupIdentifier.MakeGroupIdentifier(chromatogramSet.Annotations.GetAnnotation(annotationDef)));
}
public GroupIdentifier GetGroupIdentifier(AnnotationCalculator annotationCalculator, ChromatogramSet chromatogramSet)
{
AnnotationDef annotationDef =
annotationCalculator.SrmDocument.Settings.DataSettings.AnnotationDefs.FirstOrDefault(a => a.Name == ControlAnnotation);
if (annotationDef == null)
{
return(default(GroupIdentifier));
}
return(GroupIdentifier.MakeGroupIdentifier(annotationCalculator.GetReplicateAnnotation(annotationDef, chromatogramSet)));
}
public GroupIdentifier GetControlGroupIdentifier(SrmSettings settings)
{
if (string.IsNullOrEmpty(ControlAnnotation))
{
return(default(GroupIdentifier));
}
AnnotationDef annotationDef =
settings.DataSettings.AnnotationDefs.FirstOrDefault(a => a.Name == ControlAnnotation);
if (annotationDef == null)
{
return(default(GroupIdentifier));
}
return(GroupIdentifier.MakeGroupIdentifier(annotationDef.ParsePersistedString(ControlValue)));
}