public ProteinMetadata ChangeWebSearchInfo(WebSearchInfo webSearchInfo)
{
return(new ProteinMetadata(this)
{
WebSearchInfo = webSearchInfo
});
}
public ProteinMetadata(string name, string description, string preferredName, string accession, string gene, string species, string websearchterm = null)
{
Name = name;
Description = description;
PreferredName = preferredName;
Accession = accession;
Gene = gene;
Species = species;
WebSearchInfo = WebSearchInfo.FromString(websearchterm);
}
private ProteinMetadata(ProteinMetadata other)
{
if (other == null)
{
return;
}
Name = other.Name;
Description = other.Description;
PreferredName = other.PreferredName;
Accession = other.Accession;
Gene = other.Gene;
Species = other.Species;
WebSearchInfo = other.WebSearchInfo;
}
public bool HasProteinNamesWithUnresolvedMetadata()
{
// Get a list of proteins with unresolved metadata websearches
using (var session = OpenSession())
{
var hql = @"SELECT WebSearchStatus FROM " + typeof(DbProteinName);
var query = session.CreateQuery(hql);
foreach (var value in query.List())
{
var term = value == null ? string.Empty : value.ToString();
var webSearchInfo = WebSearchInfo.FromString(term);
if (webSearchInfo.GetPendingSearchTerm().Length > 0 || // Protein not yet searched
webSearchInfo.IsEmpty()) // Protein has never been considered for metadata search
{
return(true);
}
}
}
return(false);
}