public IsotopeDistributionForm(Workspace workspace)
: base(workspace)
{
InitializeComponent();
_msGraphControl = new MSGraphControlEx {Dock = DockStyle.Fill};
_msGraphControl.GraphPane.XAxis.Title.Text = "M/Z";
_msGraphControl.GraphPane.YAxis.Title.Text = "Intensity";
colMass.DefaultCellStyle.Format = "0.######";
colIntensity.DefaultCellStyle.Format = "0.######";
splitContainer1.Panel2.Controls.Add(_msGraphControl);
}
public OpenDataSourceDialog()
{
InitializeComponent();
listViewColumnSorter = new ListViewColumnSorter();
listView.ListViewItemSorter = listViewColumnSorter;
DialogResult = DialogResult.Cancel;
string[] sourceTypes = new string[]
{
"Any spectra format",
"mzML",
//"mzData",
"mzXML",
"mz5",
"Thermo RAW",
"Waters RAW",
"ABSciex WIFF",
//"Bruker/Agilent YEP",
//"Bruker BAF",
//"Bruker FID",
"Bruker Analysis",
"Agilent MassHunter",
"Mascot Generic",
"Bruker Data Exchange",
//"Sequest DTA"
};
sourceTypeComboBox.Items.AddRange( sourceTypes );
sourceTypeComboBox.SelectedIndex = 0;
ImageList smallImageList = new ImageList();
smallImageList.ColorDepth = ColorDepth.Depth32Bit;
smallImageList.Images.Add( Properties.Resources.folder );
smallImageList.Images.Add( Properties.Resources.file );
smallImageList.Images.Add( Properties.Resources.DataProcessing );
listView.SmallImageList = smallImageList;
TreeView tv = new TreeView();
tv.Indent = 8;
TreeNode lookInNode = tv.Nodes.Add( "My Recent Documents", "My Recent Documents", 0, 0 );
lookInNode.Tag = lookInNode.Text;
lookInComboBox.Items.Add( lookInNode );
TreeNode desktopNode = tv.Nodes.Add( "Desktop", "Desktop", 1, 1 );
desktopNode.Tag = desktopNode.Text;
lookInComboBox.Items.Add( desktopNode );
lookInNode = desktopNode.Nodes.Add( "My Documents", "My Documents", 2, 2 );
lookInNode.Tag = lookInNode.Text;
lookInComboBox.Items.Add( lookInNode );
TreeNode myComputerNode = desktopNode.Nodes.Add( "My Computer", "My Computer", 3, 3 );
myComputerNode.Tag = myComputerNode.Text;
lookInComboBox.Items.Add( myComputerNode );
lookInComboBox.SelectedIndex = 1;
lookInComboBox.IntegralHeight = false;
lookInComboBox.DropDownHeight = lookInComboBox.Items.Count * lookInComboBox.ItemHeight + 2;
ticGraphControl = new MSGraphControl()
{
Dock = DockStyle.Fill,
};
ticGraphControl.GraphPane.Legend.IsVisible = false;
ticGraphControl.Visible = false;
splitContainer1.Panel2.Controls.Add( ticGraphControl );
splitContainer1.Panel2Collapsed = false;
}
public SpectrumViewer(string filename, object index, string interpretation)
{
// Prepare the annotation
annotation = new PeptideFragmentationAnnotation(interpretation, 1, 2, false, true, false, false, true, false, false, true, false, true);
annotation.OptionsPanel.Dock = DockStyle.None;
annotation.OptionsPanel.Dock = DockStyle.Fill;
// Get the mass spectrum
spectrum = SpectrumCache.GetMassSpectrum(filename,index);
if(spectrum == null)
return;
// Add annotation to the mass spectrum and get a new graph control
spectrum.AnnotationList.Clear();
spectrum.AnnotationList.Add((IAnnotation)annotation);
graph = new MSGraphControl();
graph.AddGraphItem(graph.GraphPane, spectrum);
graph.Dock = DockStyle.Fill;
// Create new panels and add the graph and annotations
spectrumPanel = new Panel();
spectrumPanel.Controls.Add(graph);
spectrumPanel.Dock = DockStyle.None;
spectrumPanel.Dock = DockStyle.Fill;
annotationPanel = new Panel();
annotationPanel.Controls.Add(annotation.OptionsPanel);
annotationPanel.Dock = DockStyle.None;
annotationPanel.Dock = DockStyle.Fill;
fragmentationPanel = new Panel();
annotation.FragmentInfoGridView.Location = new Point(0,0);
annotation.FragmentInfoGridView.ScrollBars = ScrollBars.Both;
annotation.FragmentInfoGridView.Dock = DockStyle.None;
annotation.FragmentInfoGridView.Dock = DockStyle.Fill;
annotation.FragmentInfoGridView.BorderStyle = BorderStyle.FixedSingle;
fragmentationPanel.Controls.Add(annotation.FragmentInfoGridView);
fragmentationPanel.Dock = DockStyle.None;
fragmentationPanel.Dock = DockStyle.Fill;
// Add the call back for refreshing
annotation.OptionsChanged += new EventHandler(OnOptionsChanged);
}
private MSGraphPane InsertMsGraphPane(MSGraphControl graphControl, int iInsert)
{
var pane = new MSGraphPane
{
Border = { IsVisible = false },
AllowCurveOverlap = true,
};
ApplySettingsToGraphPane(pane);
var primaryPane = graphControl.GraphPane;
pane.CurrentItemType = primaryPane.CurrentItemType;
pane.ZoomStack.AddRange(primaryPane.ZoomStack);
var zoomState = new ZoomState(primaryPane, ZoomState.StateType.Zoom);
zoomState.ApplyState(pane);
pane.YAxis.Title.Text = primaryPane.YAxis.Title.Text;
pane.XAxis.Title.Text = primaryPane.XAxis.Title.Text;
graphControl.MasterPane.PaneList.Insert(iInsert, pane);
return pane;
}
public MSGraphPane GetOrCreateGraphPane(MSGraphControl graphControl, PaneKey graphPaneKey)
{
var pane = GetGraphPane(graphControl, graphPaneKey);
if (null != pane)
{
return pane;
}
if (GraphPaneKeys.Count == 0)
{
GraphPaneKeys.Add(graphPaneKey);
pane = graphControl.GraphPane;
ApplySettingsToGraphPane(pane);
return pane;
}
int index = GraphPaneKeys.BinarySearch(graphPaneKey);
int iInsert = ~index;
var graphPane = InsertMsGraphPane(graphControl, iInsert);
GraphPaneKeys.Insert(iInsert, graphPaneKey);
using (var graphics = graphControl.CreateGraphics())
{
graphControl.MasterPane.SetLayout(graphics, PaneLayout.SingleColumn);
}
return graphPane;
}
public MSGraphPane GetGraphPane(MSGraphControl graphControl, PaneKey graphPaneKey)
{
if (!AllowSplitPanes)
{
return graphControl.GraphPane;
}
int index = GraphPaneKeys.BinarySearch(graphPaneKey);
if (index >= 0)
{
return (MSGraphPane) graphControl.MasterPane.PaneList[index];
}
return null;
}
public static GraphHelper Attach(MSGraphControl msGraphControl)
{
GraphHelper graphHelper = new GraphHelper(msGraphControl);
msGraphControl.MasterPane.Border.IsVisible = false;
msGraphControl.GraphPane.Border.IsVisible = false;
msGraphControl.GraphPane.AllowCurveOverlap = true;
return graphHelper;
}
public GraphHelper(MSGraphControl msGraphControl)
{
GraphControl = msGraphControl;
_displayState = new ErrorDisplayState();
}