public void test_Species_setId4()
{
Species c = new Species(2,2);
int i = c.setId( "cell");
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( true, c.isSetId() );
assertTrue(( "cell" == c.getId() ));
i = c.setId("");
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( false, c.isSetId() );
c = null;
}
public void test_Model_getSpecies()
{
Species s1 = new Species(2,4);
Species s2 = new Species(2,4);
s1.setId( "Glucose" );
s2.setId( "Glucose_6_P" );
s1.setCompartment( "c");
s2.setCompartment( "c");
M.addSpecies(s1);
M.addSpecies(s2);
assertTrue( M.getNumSpecies() == 2 );
s1 = M.getSpecies(0);
s2 = M.getSpecies(1);
assertTrue(( "Glucose" == s1.getId() ));
assertTrue(( "Glucose_6_P" == s2.getId() ));
}
public void test_L3_Species_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3,1);
sbmlns.addNamespaces(xmlns);
Species s = new Species(sbmlns);
assertTrue( s.getTypeCode() == libsbml.SBML_SPECIES );
assertTrue( s.getMetaId() == "" );
assertTrue( s.getNotes() == null );
assertTrue( s.getAnnotation() == null );
assertTrue( s.getLevel() == 3 );
assertTrue( s.getVersion() == 1 );
assertTrue( s.getNamespaces() != null );
assertTrue( s.getNamespaces().getLength() == 2 );
assertTrue( s.getId() == "" );
assertTrue( s.getName() == "" );
assertTrue( s.getCompartment() == "" );
assertEquals( true, isnan(s.getInitialAmount()) );
assertEquals( true, isnan(s.getInitialConcentration()) );
assertTrue( s.getSubstanceUnits() == "" );
assertTrue( s.getHasOnlySubstanceUnits() == false );
assertTrue( s.getBoundaryCondition() == false );
assertTrue( s.getConstant() == false );
assertTrue( s.getConversionFactor() == "" );
assertEquals( false, s.isSetId() );
assertEquals( false, s.isSetName() );
assertEquals( false, s.isSetCompartment() );
assertEquals( false, s.isSetInitialAmount() );
assertEquals( false, s.isSetInitialConcentration() );
assertEquals( false, s.isSetSubstanceUnits() );
assertEquals( false, s.isSetHasOnlySubstanceUnits() );
assertEquals( false, s.isSetBoundaryCondition() );
assertEquals( false, s.isSetConstant() );
assertEquals( false, s.isSetConversionFactor() );
s = null;
}
public void test_L3_Species_initDefaults()
{
Species s = new Species(3,1);
assertTrue( s.getId() == "" );
assertTrue( s.getName() == "" );
assertTrue( s.getCompartment() == "" );
assertEquals( true, isnan(s.getInitialAmount()) );
assertEquals( true, isnan(s.getInitialConcentration()) );
assertTrue( s.getSubstanceUnits() == "" );
assertTrue( s.getHasOnlySubstanceUnits() == false );
assertTrue( s.getBoundaryCondition() == false );
assertTrue( s.getConstant() == false );
assertTrue( s.getConversionFactor() == "" );
assertEquals( false, s.isSetId() );
assertEquals( false, s.isSetName() );
assertEquals( false, s.isSetCompartment() );
assertEquals( false, s.isSetInitialAmount() );
assertEquals( false, s.isSetInitialConcentration() );
assertEquals( false, s.isSetSubstanceUnits() );
assertEquals( false, s.isSetHasOnlySubstanceUnits() );
assertEquals( false, s.isSetBoundaryCondition() );
assertEquals( false, s.isSetConstant() );
assertEquals( false, s.isSetConversionFactor() );
s.initDefaults();
assertTrue( s.getId() == "" );
assertTrue( s.getName() == "" );
assertTrue( s.getCompartment() == "" );
assertEquals( true, isnan(s.getInitialAmount()) );
assertEquals( true, isnan(s.getInitialConcentration()) );
assertTrue(( "mole" == s.getSubstanceUnits() ));
assertTrue( s.getHasOnlySubstanceUnits() == false );
assertTrue( s.getBoundaryCondition() == false );
assertTrue( s.getConstant() == false );
assertTrue( s.getConversionFactor() == "" );
assertEquals( false, s.isSetId() );
assertEquals( false, s.isSetName() );
assertEquals( false, s.isSetCompartment() );
assertEquals( false, s.isSetInitialAmount() );
assertEquals( false, s.isSetInitialConcentration() );
assertEquals( true, s.isSetSubstanceUnits() );
assertEquals( true, s.isSetHasOnlySubstanceUnits() );
assertEquals( true, s.isSetBoundaryCondition() );
assertEquals( true, s.isSetConstant() );
assertEquals( false, s.isSetConversionFactor() );
s = null;
}
public void test_Species_copyConstructor()
{
Species o1 = new Species(2,4);
o1.setId("c");
o1.setSpeciesType("c1");
assertTrue( o1.getId() == "c" );
assertEquals(o1.getSpeciesType(), "c1");
Species o2 = new Species(o1);
assertTrue( o2.getId() == "c" );
assertEquals(o2.getSpeciesType(), "c1");
assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() );
o2 = null;
o1 = null;
}
