public void test_Event_parent_create() { Model m = new Model(2,4); Event e = m.createEvent(); ListOf lo = m.getListOfEvents(); assertTrue( lo == m.getEvent(0).getParentSBMLObject() ); assertTrue( lo == e.getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
/// <summary> /// [ EventStruct ] /// [[ Id , Name , StringTrigger , StringDelay , TimeUnit , [[ VariableAssignment , StringAssignment ]] ]] /// </summary> /// <param name="aSBMLmodel"></param> /// <returns></returns> public static List<EventStruct> getEvent(Model aSBMLmodel) { List<EventStruct> list = new List<EventStruct>(); ListOfEvents events = aSBMLmodel.getListOfEvents(); for (int i = 0; i < events.size(); i++ ) { Event anEvent = aSBMLmodel.getEvent(i); string anId_Ev = anEvent.getId(); string aName_Ev = anEvent.getName(); Trigger anASTNode_Ev_Tr = anEvent.getTrigger(); string aString_Ev_Tr = libsbml.libsbml.formulaToString(anASTNode_Ev_Tr.getMath()); Delay anASTNode_Ev_De = anEvent.getDelay(); string aString_Ev_De = libsbml.libsbml.formulaToString(anASTNode_Ev_Tr.getMath()); string aTimeUnit_Ev = anEvent.getTimeUnits(); List<EventAssignmentStruct> listOfEventAssignments = new List<EventAssignmentStruct>(); ListOfEventAssignments assignments = anEvent.getListOfEventAssignments(); for (int j = 0; j < assignments.size(); j++ ) { EventAssignment anEventAssignment = anEvent.getEventAssignment(j); string aVariable_Ev_As = anEventAssignment.getVariable(); ASTNode anASTNode_Ev_As = anEventAssignment.getMath(); string aString_Ev_As = libsbml.libsbml.formulaToString(anASTNode_Ev_As); EventAssignmentStruct listOfEventAssignment = new EventAssignmentStruct( aVariable_Ev_As, aString_Ev_As); listOfEventAssignments.Add(listOfEventAssignment); } EventStruct eventStruct = new EventStruct( anId_Ev, aName_Ev, aString_Ev_Tr, aString_Ev_De, aTimeUnit_Ev, listOfEventAssignments); list.Add(eventStruct); } return list; }
public void test_Event_ancestor_create() { Model m = new Model(2,4); Event e = m.createEvent(); ListOf lo = m.getListOfEvents(); assertTrue( e.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( e.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( e.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( e.getAncestorOfType(libsbml.SBML_PARAMETER) == null ); Event obj = m.getEvent(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); }
public void test_Event_parent_add() { Event e = new Event(2,4); Trigger t = new Trigger(2,4); e.setTrigger(t); e.createEventAssignment(); Model m = new Model(2,4); m.addEvent(e); e = null; ListOf lo = m.getListOfEvents(); assertTrue( lo == m.getEvent(0).getParentSBMLObject() ); assertTrue( m == lo.getParentSBMLObject() ); }
public void test_ReadSBML_metaid_Event() { SBase sb; Event e; string s = wrapSBML_L2v1("<listOfEvents>" + " <event metaid='e'>" + " <listOfEventAssignments metaid='loea'>" + " <eventAssignment metaid='ea'/>" + " </listOfEventAssignments>" + " </event>" + "</listOfEvents>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); e = M.getEvent(0); sb = e; assertEquals( true, sb.isSetMetaId() ); assertTrue(( "e" == sb.getMetaId() )); sb = e.getListOfEventAssignments(); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "loea" == sb.getMetaId() )); sb = e.getEventAssignment(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "ea" == sb.getMetaId() )); }
public void test_Event_ancestor_add() { Event e = new Event(2,4); Model m = new Model(2,4); Trigger t = new Trigger(2,4); e.setTrigger(t); e.createEventAssignment(); m.addEvent(e); e = null; ListOf lo = m.getListOfEvents(); Event obj = m.getEvent(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); }
public void test_ReadSBML_metaid() { SBase sb; string s = wrapSBML_L2v1("<listOfFunctionDefinitions>" + " <functionDefinition metaid='fd'/>" + "</listOfFunctionDefinitions>" + "<listOfUnitDefinitions>" + " <unitDefinition metaid='ud'/>" + "</listOfUnitDefinitions>" + "<listOfCompartments>" + " <compartment metaid='c'/>" + "</listOfCompartments>" + "<listOfSpecies>" + " <species metaid='s'/>" + "</listOfSpecies>" + "<listOfParameters>" + " <parameter metaid='p'/>" + "</listOfParameters>" + "<listOfRules>" + " <rateRule metaid='rr'/>" + "</listOfRules>" + "<listOfReactions>" + " <reaction metaid='rx'/>" + "</listOfReactions>" + "<listOfEvents>" + " <event metaid='e'/>" + "</listOfEvents>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M != null ); sb = M.getFunctionDefinition(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "fd" == sb.getMetaId() )); sb = M.getUnitDefinition(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "ud" == sb.getMetaId() )); sb = M.getCompartment(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "c" == sb.getMetaId() )); sb = M.getSpecies(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "s" == sb.getMetaId() )); sb = M.getParameter(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "p" == sb.getMetaId() )); sb = M.getRule(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "rr" == sb.getMetaId() )); sb = M.getReaction(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "rx" == sb.getMetaId() )); sb = M.getEvent(0); assertEquals( true, sb.isSetMetaId() ); assertTrue(( "e" == sb.getMetaId() )); }
public void test_ReadSBML_Event_trigger() { Event e; Trigger trigger; string formula; string s = wrapSBML_L2v1("<listOfEvents>" + " <event>" + " <trigger>" + " <math>" + " <apply>" + " <leq/>" + " <ci> P1 </ci>" + " <ci> t </ci>" + " </apply>" + " </math>" + " </trigger>" + " </event>" + "</listOfEvents>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumEvents() == 1 ); e = M.getEvent(0); assertTrue( e != null ); assertEquals( false, e.isSetDelay() ); assertEquals( true, e.isSetTrigger() ); trigger = e.getTrigger(); formula = libsbml.formulaToString(trigger.getMath()); assertTrue( formula != null ); assertTrue(( "leq(P1, t)" == formula )); }
public void test_ReadSBML_Event_delay() { Event e; Delay delay; string formula; string s = wrapSBML_L2v1("<listOfEvents>" + " <event> <delay> <math> <cn> 5 </cn> </math> </delay> </event>" + "</listOfEvents>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumEvents() == 1 ); e = M.getEvent(0); assertTrue( e != null ); assertEquals( true, e.isSetDelay() ); assertEquals( false, e.isSetTrigger() ); delay = e.getDelay(); formula = libsbml.formulaToString(delay.getMath()); assertTrue( formula != null ); assertTrue(( "5" == formula )); }
public void test_ReadSBML_EventAssignment() { Event e; EventAssignment ea; ASTNode math; string formula; string s = wrapSBML_L2v1("<listOfEvents>" + " <event>" + " <listOfEventAssignments>" + " <eventAssignment variable='k2'>" + " <math> <cn> 0 </cn> </math>" + " </eventAssignment>" + " </listOfEventAssignments>" + " </event>" + "</listOfEvents>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumEvents() == 1 ); e = M.getEvent(0); assertTrue( e != null ); assertTrue( e.getNumEventAssignments() == 1 ); ea = e.getEventAssignment(0); assertTrue( ea != null ); assertEquals( true, ea.isSetVariable() ); assertTrue(( "k2" == ea.getVariable() )); assertEquals( true, ea.isSetMath() ); math = ea.getMath(); formula = libsbml.formulaToString(math); assertTrue( formula != null ); assertTrue(( "0" == formula )); }
public void test_ReadSBML_Event() { Event e; string s = wrapSBML_L2v2("<listOfEvents>" + " <event id='e1' name='MyEvent' timeUnits='time'/>" + "</listOfEvents>"); D = libsbml.readSBMLFromString(s); M = D.getModel(); assertTrue( M.getNumEvents() == 1 ); e = M.getEvent(0); assertTrue( e != null ); assertEquals( true, e.isSetId() ); assertEquals( true, e.isSetName() ); assertEquals( true, e.isSetTimeUnits() ); assertEquals( false, e.isSetTrigger() ); assertEquals( false, e.isSetDelay() ); assertTrue(( "e1" == e.getId() )); assertTrue(( "MyEvent" == e.getName() )); assertTrue(( "time" == e.getTimeUnits() )); }