public void test_ASTNode_addChild1()
{
ASTNode node = new ASTNode();
ASTNode c1 = new ASTNode();
ASTNode c2 = new ASTNode();
ASTNode c1_1 = new ASTNode();
int i = 0;
node.setType(libsbml.AST_LOGICAL_AND);
c1.setName( "a");
c2.setName( "b");
node.addChild(c1);
node.addChild(c2);
assertTrue( node.getNumChildren() == 2 );
assertTrue(( "and(a, b)" == libsbml.formulaToString(node) ));
c1_1.setName( "d");
i = node.addChild(c1_1);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( node.getNumChildren() == 3 );
assertTrue(( "and(a, b, d)" == libsbml.formulaToString(node) ));
assertTrue(( "a" == node.getChild(0).getName() ));
assertTrue(( "b" == node.getChild(1).getName() ));
assertTrue(( "d" == node.getChild(2).getName() ));
node = null;
}
public void test_ASTNode_isUMinus()
{
ASTNode n = new ASTNode();
n.setType(libsbml.AST_MINUS);
assertTrue( n.isUMinus() == false );
n.addChild(new ASTNode(libsbml.AST_NAME));
assertTrue( n.isUMinus() == true );
n = null;
}
public void test_ASTNode_isSqrt()
{
ASTNode n = new ASTNode();
ASTNode c;
n.setType(libsbml.AST_FUNCTION);
assertTrue( n.isSqrt() == false );
n.setType(libsbml.AST_FUNCTION_ROOT);
assertTrue( n.isSqrt() == false );
c = new ASTNode();
n.addChild(c);
c.setValue(2);
assertTrue( n.isSqrt() == false );
n.addChild(new ASTNode());
assertTrue( n.isSqrt() == true );
c.setValue(3);
assertTrue( n.isSqrt() == false );
n = null;
}
public void test_ASTNode_getReal()
{
ASTNode n = new ASTNode();
n.setType(libsbml.AST_REAL);
n.setValue(1.6);
assertTrue( n.getReal() == 1.6 );
n.setType(libsbml.AST_REAL_E);
n.setValue(12.3,3);
double val = Math.Abs(n.getReal() - 12300.0);
assertTrue( val < DBL_EPSILON );
n.setType(libsbml.AST_RATIONAL);
n.setValue(1,2);
assertTrue( n.getReal() == 0.5 );
n = null;
}
public void test_ASTNode_getPrecedence()
{
ASTNode n = new ASTNode();
n.setType(libsbml.AST_PLUS);
assertTrue( n.getPrecedence() == 2 );
n.setType(libsbml.AST_MINUS);
assertTrue( n.getPrecedence() == 2 );
n.setType(libsbml.AST_TIMES);
assertTrue( n.getPrecedence() == 3 );
n.setType(libsbml.AST_DIVIDE);
assertTrue( n.getPrecedence() == 3 );
n.setType(libsbml.AST_POWER);
assertTrue( n.getPrecedence() == 4 );
n.setType(libsbml.AST_MINUS);
n.addChild(new ASTNode(libsbml.AST_NAME));
assertTrue( n.isUMinus() == true );
assertTrue( n.getPrecedence() == 5 );
n.setType(libsbml.AST_NAME);
assertTrue( n.getPrecedence() == 6 );
n.setType(libsbml.AST_FUNCTION);
assertTrue( n.getPrecedence() == 6 );
n = null;
}
public void test_ASTNode_getName()
{
ASTNode n = new ASTNode();
n.setName( "foo");
assertTrue(( "foo" == n.getName() ));
n.setType(libsbml.AST_NAME_TIME);
assertTrue(( "foo" == n.getName() ));
n.setName(null);
assertTrue( n.getName() == null );
n.setType(libsbml.AST_CONSTANT_E);
assertTrue(( "exponentiale" == n.getName() ));
n.setType(libsbml.AST_CONSTANT_FALSE);
assertTrue(( "false" == n.getName() ));
n.setType(libsbml.AST_CONSTANT_PI);
assertTrue(( "pi" == n.getName() ));
n.setType(libsbml.AST_CONSTANT_TRUE);
assertTrue(( "true" == n.getName() ));
n.setType(libsbml.AST_LAMBDA);
assertTrue(( "lambda" == n.getName() ));
n.setType(libsbml.AST_FUNCTION);
n.setName( "f");
assertTrue(( "f" == n.getName() ));
n.setType(libsbml.AST_FUNCTION_DELAY);
assertTrue(( "f" == n.getName() ));
n.setName(null);
assertTrue(( "delay" == n.getName() ));
n.setType(libsbml.AST_FUNCTION);
assertTrue( n.getName() == null );
n.setType(libsbml.AST_FUNCTION_ABS);
assertTrue(( "abs" == n.getName() ));
n.setType(libsbml.AST_FUNCTION_ARCCOS);
assertTrue(( "arccos" == n.getName() ));
n.setType(libsbml.AST_FUNCTION_TAN);
assertTrue(( "tan" == n.getName() ));
n.setType(libsbml.AST_FUNCTION_TANH);
assertTrue(( "tanh" == n.getName() ));
n.setType(libsbml.AST_LOGICAL_AND);
assertTrue(( "and" == n.getName() ));
n.setType(libsbml.AST_LOGICAL_NOT);
assertTrue(( "not" == n.getName() ));
n.setType(libsbml.AST_LOGICAL_OR);
assertTrue(( "or" == n.getName() ));
n.setType(libsbml.AST_LOGICAL_XOR);
assertTrue(( "xor" == n.getName() ));
n.setType(libsbml.AST_RELATIONAL_EQ);
assertTrue(( "eq" == n.getName() ));
n.setType(libsbml.AST_RELATIONAL_GEQ);
assertTrue(( "geq" == n.getName() ));
n.setType(libsbml.AST_RELATIONAL_LT);
assertTrue(( "lt" == n.getName() ));
n.setType(libsbml.AST_RELATIONAL_NEQ);
assertTrue(( "neq" == n.getName() ));
n = null;
}
public void test_ASTNode_setName()
{
string name = "foo";
ASTNode node = new ASTNode();
assertTrue( node.getType() == libsbml.AST_UNKNOWN );
node.setName(name);
assertTrue( node.getType() == libsbml.AST_NAME );
assertTrue(( name == node.getName() ));
assertTrue( node.getCharacter() == '\0' );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
if (node.getName() == name);
{
}
node.setName(null);
assertTrue( node.getType() == libsbml.AST_NAME );
if (node.getName() != null);
{
}
node.setType(libsbml.AST_FUNCTION_COS);
assertTrue( node.getType() == libsbml.AST_FUNCTION_COS );
assertTrue(( "cos" == node.getName() ));
assertTrue( node.getCharacter() == '\0' );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node.setType(libsbml.AST_PLUS);
node.setName(name);
assertTrue( node.getType() == libsbml.AST_NAME );
assertTrue(( name == node.getName() ));
assertTrue( node.getCharacter() == '+' );
assertTrue( node.getInteger() == 0 );
assertTrue( node.getReal() == 0 );
assertTrue( node.getExponent() == 0 );
assertTrue( node.getDenominator() == 1 );
node = null;
}
public void test_ASTNode_replaceChild()
{
ASTNode node = new ASTNode();
ASTNode c1 = new ASTNode();
ASTNode c2 = new ASTNode();
ASTNode c3 = new ASTNode();
ASTNode newc = new ASTNode();
int i = 0;
node.setType(libsbml.AST_LOGICAL_AND);
c1.setName( "a");
c2.setName( "b");
c3.setName( "c");
node.addChild(c1);
node.addChild(c2);
node.addChild(c3);
assertTrue( node.getNumChildren() == 3 );
assertTrue(( "and(a, b, c)" == libsbml.formulaToString(node) ));
newc.setName( "d");
i = node.replaceChild(0,newc);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( node.getNumChildren() == 3 );
assertTrue(( "and(d, b, c)" == libsbml.formulaToString(node) ));
i = node.replaceChild(3,newc);
assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE );
assertTrue( node.getNumChildren() == 3 );
assertTrue(( "and(d, b, c)" == libsbml.formulaToString(node) ));
i = node.replaceChild(1,c1);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( node.getNumChildren() == 3 );
assertTrue(( "and(d, a, c)" == libsbml.formulaToString(node) ));
node = null;
}
public void test_ASTNode_children()
{
ASTNode parent = new ASTNode();
ASTNode left = new ASTNode();
ASTNode right = new ASTNode();
ASTNode right2 = new ASTNode();
parent.setType(libsbml.AST_PLUS);
left.setValue(1);
right.setValue(2);
right2.setValue(3);
parent.addChild(left);
parent.addChild(right);
assertTrue( parent.getNumChildren() == 2 );
assertTrue( left.getNumChildren() == 0 );
assertTrue( right.getNumChildren() == 0 );
assertTrue( parent.getLeftChild() == left );
assertTrue( parent.getRightChild() == right );
assertTrue( parent.getChild(0) == left );
assertTrue( parent.getChild(1) == right );
assertTrue( parent.getChild(2) == null );
parent.addChild(right2);
assertTrue( parent.getNumChildren() == 3 );
assertTrue( left.getNumChildren() == 0 );
assertTrue( right.getNumChildren() == 0 );
assertTrue( right2.getNumChildren() == 0 );
assertTrue( parent.getLeftChild() == left );
assertTrue( parent.getRightChild() == right2 );
assertTrue( parent.getChild(0) == left );
assertTrue( parent.getChild(1) == right );
assertTrue( parent.getChild(2) == right2 );
assertTrue( parent.getChild(3) == null );
parent = null;
}
public void test_ASTNode_canonicalizeRelational()
{
ASTNode n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "eq");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_EQ );
n.setType(libsbml.AST_FUNCTION);
n.setName( "geq");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_GEQ );
n.setType(libsbml.AST_FUNCTION);
n.setName( "gt");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_GT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "leq");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_LEQ );
n.setType(libsbml.AST_FUNCTION);
n.setName( "lt");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_LT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "neq");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_RELATIONAL_NEQ );
n.setType(libsbml.AST_FUNCTION);
n = null;
}
public void test_ASTNode_canonicalizeLogical()
{
ASTNode n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "and");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LOGICAL_AND );
n.setType(libsbml.AST_FUNCTION);
n.setName( "not");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LOGICAL_NOT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "or");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LOGICAL_OR );
n.setType(libsbml.AST_FUNCTION);
n.setName( "xor");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LOGICAL_XOR );
n.setType(libsbml.AST_FUNCTION);
n = null;
}
public void test_ASTNode_canonicalizeFunctionsL1()
{
ASTNode n = new ASTNode(libsbml.AST_FUNCTION);
ASTNode c;
n.setName( "acos");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOS );
n.setType(libsbml.AST_FUNCTION);
n.setName( "asin");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSIN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "atan");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTAN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "ceil");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_CEILING );
n.setType(libsbml.AST_FUNCTION);
n.setName( "pow");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER );
n = null;
n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "log");
c = new ASTNode();
c.setName( "x");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 1 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LN );
assertTrue( n.getNumChildren() == 1 );
n.setType(libsbml.AST_FUNCTION);
c = new ASTNode();
c.setName( "y");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 2 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG );
n = null;
n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "log10");
c = new ASTNode();
c.setName( "x");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 1 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG );
assertTrue( n.getNumChildren() == 2 );
c = n.getLeftChild();
assertTrue( c.getType() == libsbml.AST_INTEGER );
assertTrue( c.getInteger() == 10 );
c = n.getRightChild();
assertTrue( c.getType() == libsbml.AST_NAME );
assertTrue(( "x" == c.getName() ));
n = null;
n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "sqr");
c = new ASTNode();
c.setName( "x");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 1 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER );
assertTrue( n.getNumChildren() == 2 );
c = n.getLeftChild();
assertTrue( c.getType() == libsbml.AST_NAME );
assertTrue(( "x" == c.getName() ));
c = n.getRightChild();
assertTrue( c.getType() == libsbml.AST_INTEGER );
assertTrue( c.getInteger() == 2 );
n = null;
n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "sqrt");
c = new ASTNode();
c.setName( "x");
n.addChild(c);
assertTrue( n.getType() == libsbml.AST_FUNCTION );
assertTrue( n.getNumChildren() == 1 );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ROOT );
assertTrue( n.getNumChildren() == 2 );
c = n.getLeftChild();
assertTrue( c.getType() == libsbml.AST_INTEGER );
assertTrue( c.getInteger() == 2 );
c = n.getRightChild();
assertTrue( c.getType() == libsbml.AST_NAME );
assertTrue(( "x" == c.getName() ));
n = null;
}
public void test_ASTNode_canonicalizeFunctions()
{
ASTNode n = new ASTNode(libsbml.AST_FUNCTION);
n.setName( "abs");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ABS );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccos");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOS );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccosh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOSH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccot");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccoth");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOTH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccsc");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCSC );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arccsch");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCSCH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arcsec");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSEC );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arcsech");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSECH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arcsin");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSIN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arcsinh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSINH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arctan");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTAN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "arctanh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTANH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "ceiling");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_CEILING );
n.setType(libsbml.AST_FUNCTION);
n.setName( "cos");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_COS );
n.setType(libsbml.AST_FUNCTION);
n.setName( "cosh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_COSH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "cot");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_COT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "coth");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_COTH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "csc");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_CSC );
n.setType(libsbml.AST_FUNCTION);
n.setName( "csch");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_CSCH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "exp");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_EXP );
n.setType(libsbml.AST_FUNCTION);
n.setName( "factorial");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_FACTORIAL );
n.setType(libsbml.AST_FUNCTION);
n.setName( "floor");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_FLOOR );
n.setType(libsbml.AST_FUNCTION);
n.setName( "lambda");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_LAMBDA );
n.setType(libsbml.AST_FUNCTION);
n.setName( "ln");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "log");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG );
n.setType(libsbml.AST_FUNCTION);
n.setName( "piecewise");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_PIECEWISE );
n.setType(libsbml.AST_FUNCTION);
n.setName( "power");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER );
n.setType(libsbml.AST_FUNCTION);
n.setName( "root");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_ROOT );
n.setType(libsbml.AST_FUNCTION);
n.setName( "sec");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_SEC );
n.setType(libsbml.AST_FUNCTION);
n.setName( "sech");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_SECH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "sin");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_SIN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "sinh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_SINH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "tan");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_TAN );
n.setType(libsbml.AST_FUNCTION);
n.setName( "tanh");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION_TANH );
n.setType(libsbml.AST_FUNCTION);
n.setName( "Foo");
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_FUNCTION );
n = null;
}
public void test_ASTNode_units()
{
ASTNode n = new ASTNode();
n.setType(libsbml.AST_REAL);
n.setValue(1.6);
int i = n.setUnits( "mole");
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( n.isSetUnits() == true );
assertTrue(( "mole" == n.getUnits() ));
i = n.unsetUnits();
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( n.isSetUnits() == false );
assertTrue(( "" == n.getUnits() ));
i = n.setUnits( "1mole");
assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE );
assertTrue( n.isSetUnits() == false );
n.setType(libsbml.AST_FUNCTION);
i = n.setUnits( "mole");
assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE );
assertTrue( n.isSetUnits() == false );
assertTrue(( "" == n.getUnits() ));
n = null;
}
public void test_ASTNode_setType()
{
ASTNode node = new ASTNode();
node.setName( "foo");
assertTrue( node.getType() == libsbml.AST_NAME );
node.setType(libsbml.AST_FUNCTION);
assertTrue( node.getType() == libsbml.AST_FUNCTION );
assertTrue(( "foo" == node.getName() ));
node.setType(libsbml.AST_NAME);
assertTrue( node.getType() == libsbml.AST_NAME );
assertTrue(( "foo" == node.getName() ));
node.setType(libsbml.AST_INTEGER);
assertTrue( node.getType() == libsbml.AST_INTEGER );
node.setType(libsbml.AST_REAL);
assertTrue( node.getType() == libsbml.AST_REAL );
node.setType(libsbml.AST_UNKNOWN);
assertTrue( node.getType() == libsbml.AST_UNKNOWN );
node.setType(libsbml.AST_PLUS);
assertTrue( node.getType() == libsbml.AST_PLUS );
assertTrue( node.getCharacter() == '+' );
node.setType(libsbml.AST_MINUS);
assertTrue( node.getType() == libsbml.AST_MINUS );
assertTrue( node.getCharacter() == '-' );
node.setType(libsbml.AST_TIMES);
assertTrue( node.getType() == libsbml.AST_TIMES );
assertTrue( node.getCharacter() == '*' );
node.setType(libsbml.AST_DIVIDE);
assertTrue( node.getType() == libsbml.AST_DIVIDE );
assertTrue( node.getCharacter() == '/' );
node.setType(libsbml.AST_POWER);
assertTrue( node.getType() == libsbml.AST_POWER );
assertTrue( node.getCharacter() == '^' );
node = null;
}
public void test_ASTNode_removeChild()
{
ASTNode node = new ASTNode();
ASTNode c1 = new ASTNode();
ASTNode c2 = new ASTNode();
int i = 0;
node.setType(libsbml.AST_PLUS);
c1.setName( "foo");
c2.setName( "foo2");
node.addChild(c1);
node.addChild(c2);
assertTrue( node.getNumChildren() == 2 );
i = node.removeChild(0);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( node.getNumChildren() == 1 );
i = node.removeChild(1);
assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE );
assertTrue( node.getNumChildren() == 1 );
i = node.removeChild(0);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( node.getNumChildren() == 0 );
node = null;
}
public void test_ASTNode_avogadro()
{
ASTNode n = new ASTNode();
n.setType(libsbml.AST_NAME_AVOGADRO);
n.setName( "NA");
assertTrue(( "NA" == n.getName() ));
double val = n.getReal();
assertTrue( val == 6.02214179e23 );
n = null;
}
public void test_ASTNode_freeName()
{
ASTNode node = new ASTNode();
int i = 0;
i = node.setName( "a");
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue(( "a" == libsbml.formulaToString(node) ));
assertTrue(( "a" == node.getName() ));
i = node.freeName();
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( node.getName() == null );
i = node.freeName();
assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE );
assertTrue( node.getName() == null );
node.setType(libsbml.AST_UNKNOWN);
i = node.freeName();
assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE );
assertTrue( node.getName() == null );
node = null;
}
public void test_ASTNode_canonicalizeConstants()
{
ASTNode n = new ASTNode();
n.setName( "ExponentialE");
assertEquals( true, n.isName() );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_CONSTANT_E );
n.setType(libsbml.AST_NAME);
n.setName( "False");
assertEquals( true, n.isName() );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_CONSTANT_FALSE );
n.setType(libsbml.AST_NAME);
n.setName( "Pi");
assertEquals( true, n.isName() );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_CONSTANT_PI );
n.setType(libsbml.AST_NAME);
n.setName( "True");
assertEquals( true, n.isName() );
n.canonicalize();
assertTrue( n.getType() == libsbml.AST_CONSTANT_TRUE );
n.setType(libsbml.AST_NAME);
n.setName( "Foo");
assertEquals( true, n.isName() );
n.canonicalize();
assertEquals( true, n.isName() );
n = null;
}
private static ASTNode setDelayType(ASTNode anASTNode)
{
long aNumChildren = anASTNode.getNumChildren();
if ( aNumChildren == 2 )
{
if ( anASTNode.isFunction() == true && anASTNode.getName() == "delay" )
anASTNode.setType( libsbml.libsbml.AST_FUNCTION_DELAY );
setDelayType(anASTNode.getLeftChild());
setDelayType(anASTNode.getRightChild());
}
else if ( aNumChildren == 1 )
setDelayType( anASTNode.getLeftChild() );
return anASTNode;
}