/// <summary>
/// constructor
/// </summary>
/// <param name="costFunction">the cost function to use</param>
public NeedlemanWunch(AbstractSubstitutionCost costFunction) : this(defaultGapCost, costFunction)
{
}
/// <summary>
/// constructor
/// </summary>
/// <param name="costFunction">the cost function to use</param>
public NeedlemanWunch(AbstractSubstitutionCost costFunction) : this(defaultGapCost, costFunction) { }
/// <summary>
/// constructor
/// </summary>
/// <param name="costG">the cost of a gap</param>
/// <param name="costFunction">the cost function to use</param>
public NeedlemanWunch(double costG, AbstractSubstitutionCost costFunction)
{
gapCost = costG;
dCostFunction = costFunction;
}
/// <summary>
/// constructor
/// </summary>
/// <param name="costG">the cost of a gap</param>
/// <param name="costFunction">the cost function to use</param>
public NeedlemanWunch(double costG, AbstractSubstitutionCost costFunction)
{
gapCost = costG;
dCostFunction = costFunction;
}