public static void SetHRASNotDetected(RASRAFPanelTestOrder testOrder)
{
testOrder.HRASAlternateNucleotideMutationName = RASRAFPanelResult.NAResult;
testOrder.HRASConsequence = RASRAFPanelResult.NAResult;
testOrder.HRASMutationName = RASRAFPanelResult.NAResult;
testOrder.HRASPredictedEffectOnProtein = RASRAFPanelResult.NAResult;
}
public static void SetBRAFNotDetected(RASRAFPanelTestOrder testOrder)
{
testOrder.BRAFAlternateNucleotideMutationName = RASRAFPanelResult.NAResult;
testOrder.BRAFConsequence = RASRAFPanelResult.NAResult;
testOrder.BRAFMutationName = RASRAFPanelResult.NAResult;
testOrder.BRAFPredictedEffectOnProtein = RASRAFPanelResult.NAResult;
}
public static void SetHRASDetected(RASRAFPanelTestOrder testOrder)
{
if(testOrder.HRASAlternateNucleotideMutationName == RASRAFPanelResult.NAResult) testOrder.HRASAlternateNucleotideMutationName = null;
if(testOrder.HRASConsequence == RASRAFPanelResult.NAResult) testOrder.HRASConsequence = null;
if(testOrder.HRASMutationName == RASRAFPanelResult.NAResult) testOrder.HRASMutationName = null;
if(testOrder.HRASPredictedEffectOnProtein == RASRAFPanelResult.NAResult) testOrder.HRASPredictedEffectOnProtein = null;
}
public override void Render()
{
RASRAFPanelTestOrder testOrder = (RASRAFPanelTestOrder)this.m_PanelSetOrder;
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\RASRAFPanel.2.xml";
base.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
this.SetCaseHistory();
YellowstonePathology.Business.Amendment.Model.AmendmentCollection amendmentCollection = this.m_AccessionOrder.AmendmentCollection.GetAmendmentsForReport(m_PanelSetOrder.ReportNo);
YellowstonePathology.Business.Document.AmendmentSection amendmentSection = new YellowstonePathology.Business.Document.AmendmentSection();
amendmentSection.SetAmendment(amendmentCollection, this.m_ReportXml, this.m_NameSpaceManager, true);
this.ReplaceText("braf_result", testOrder.BRAFResult);
this.ReplaceText("kras_result", testOrder.KRASResult);
this.ReplaceText("nras_result", testOrder.NRASResult);
this.ReplaceText("hras_result", testOrder.HRASResult);
this.ReplaceText("braf_mn", testOrder.BRAFMutationName);
this.ReplaceText("kras_mn", testOrder.KRASMutationName);
this.ReplaceText("nras_mn", testOrder.NRASMutationName);
this.ReplaceText("hras_mn", testOrder.HRASMutationName);
this.ReplaceText("braf_anmn", testOrder.BRAFAlternateNucleotideMutationName);
this.ReplaceText("kras_anmn", testOrder.KRASAlternateNucleotideMutationName);
this.ReplaceText("nras_anmn", testOrder.NRASAlternateNucleotideMutationName);
this.ReplaceText("hras_anmn", testOrder.HRASAlternateNucleotideMutationName);
this.ReplaceText("braf_cons", testOrder.BRAFConsequence);
this.ReplaceText("kras_cons", testOrder.KRASConsequence);
this.ReplaceText("nras_cons", testOrder.NRASConsequence);
this.ReplaceText("hras_cons", testOrder.HRASConsequence);
this.ReplaceText("braf_peop", testOrder.BRAFPredictedEffectOnProtein);
this.ReplaceText("kras_peop", testOrder.KRASPredictedEffectOnProtein);
this.ReplaceText("nras_peop", testOrder.NRASPredictedEffectOnProtein);
this.ReplaceText("hras_peop", testOrder.HRASPredictedEffectOnProtein);
this.ReplaceText("report_interpretation", testOrder.Interpretation);
this.ReplaceText("report_comment", testOrder.Comment);
this.ReplaceText("report_method", testOrder.Method);
this.ReplaceText("report_references", testOrder.ReportReferences);
this.ReplaceText("report_disclaimer", testOrder.ReportDisclaimer);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(this.m_PanelSetOrder.OrderedOn, this.m_PanelSetOrder.OrderedOnId);
base.ReplaceText("specimen_description", specimenOrder.Description);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.ReplaceText("referencelab_finaldate", BaseData.GetShortDateTimeString(this.m_PanelSetOrder.ReferenceLabFinalDate));
this.ReplaceText("pathologist_signature", this.m_PanelSetOrder.ReferenceLabSignature);
this.SaveReport();
}
public override void SetResults(RASRAFPanelTestOrder testOrder, ResultCollection resultCollection)
{
StringBuilder comment = new StringBuilder(this.m_Comment);
comment = comment.Replace("[NOTDETECTEDMUTATIONLIST]", resultCollection.GetNotDetectedListString());
comment = comment.Replace("[DETECTEDMUTATIONLIST]", resultCollection.GetDetectedListString());
testOrder.Comment = comment.ToString();
base.SetResults(testOrder, resultCollection);
}
public override void SetResults(RASRAFPanelTestOrder testOrder, ResultCollection resultCollection)
{
StringBuilder comment = new StringBuilder(this.m_Comment);
comment = comment.Replace("[NOTDETECTEDMUTATIONLIST]", resultCollection.GetNotDetectedListString());
comment = comment.Replace("[DETECTEDMUTATIONLIST]", resultCollection.GetDetectedListString());
testOrder.Comment = comment.ToString();
base.SetResults(testOrder, resultCollection);
}
public ResultCollection(RASRAFPanelTestOrder testOrder)
{
if (testOrder.BRAFResult == RASRAFPanelResult.DetectedResult) m_DetectedMutations.Add(RASRAFPanelResult.BRAFAbbreviation);
else m_NotDetectedMutations.Add(RASRAFPanelResult.BRAFAbbreviation);
if (testOrder.KRASResult == RASRAFPanelResult.DetectedResult) m_DetectedMutations.Add(RASRAFPanelResult.KRASAbbreviation);
else m_NotDetectedMutations.Add(RASRAFPanelResult.KRASAbbreviation);
if (testOrder.NRASResult == RASRAFPanelResult.DetectedResult) m_DetectedMutations.Add(RASRAFPanelResult.NRASAbbreviation);
else m_NotDetectedMutations.Add(RASRAFPanelResult.NRASAbbreviation);
if (testOrder.HRASResult == RASRAFPanelResult.DetectedResult) m_DetectedMutations.Add(RASRAFPanelResult.HRASAbbreviation);
else m_NotDetectedMutations.Add(RASRAFPanelResult.HRASAbbreviation);
}
public virtual void SetResults(RASRAFPanelTestOrder testOrder, ResultCollection resultCollection)
{
StringBuilder interpretation = new StringBuilder();
interpretation.AppendLine(this.m_InterpretationFirstLine);
interpretation.AppendLine();
interpretation.Append(this.m_InterpretationBody);
interpretation = interpretation.Replace("[NOTDETECTEDMUTATIONLIST]", resultCollection.GetNotDetectedListString());
interpretation = interpretation.Replace("[DETECTEDMUTATIONLIST]", resultCollection.GetDetectedListString());
testOrder.Interpretation = interpretation.ToString();
StringBuilder disclaimer = new StringBuilder();
disclaimer.AppendLine(testOrder.GetLocationPerformedComment());
disclaimer.Append(m_TestDevelopment);
testOrder.ReportDisclaimer = disclaimer.ToString();
}
public static void SetHRASDetected(RASRAFPanelTestOrder testOrder)
{
if (testOrder.HRASAlternateNucleotideMutationName == RASRAFPanelResult.NAResult)
{
testOrder.HRASAlternateNucleotideMutationName = null;
}
if (testOrder.HRASConsequence == RASRAFPanelResult.NAResult)
{
testOrder.HRASConsequence = null;
}
if (testOrder.HRASMutationName == RASRAFPanelResult.NAResult)
{
testOrder.HRASMutationName = null;
}
if (testOrder.HRASPredictedEffectOnProtein == RASRAFPanelResult.NAResult)
{
testOrder.HRASPredictedEffectOnProtein = null;
}
}
public ResultCollection(RASRAFPanelTestOrder testOrder)
{
if (testOrder.BRAFResult == RASRAFPanelResult.DetectedResult)
{
m_DetectedMutations.Add(RASRAFPanelResult.BRAFAbbreviation);
}
else
{
m_NotDetectedMutations.Add(RASRAFPanelResult.BRAFAbbreviation);
}
if (testOrder.KRASResult == RASRAFPanelResult.DetectedResult)
{
m_DetectedMutations.Add(RASRAFPanelResult.KRASAbbreviation);
}
else
{
m_NotDetectedMutations.Add(RASRAFPanelResult.KRASAbbreviation);
}
if (testOrder.NRASResult == RASRAFPanelResult.DetectedResult)
{
m_DetectedMutations.Add(RASRAFPanelResult.NRASAbbreviation);
}
else
{
m_NotDetectedMutations.Add(RASRAFPanelResult.NRASAbbreviation);
}
if (testOrder.HRASResult == RASRAFPanelResult.DetectedResult)
{
m_DetectedMutations.Add(RASRAFPanelResult.HRASAbbreviation);
}
else
{
m_NotDetectedMutations.Add(RASRAFPanelResult.HRASAbbreviation);
}
}
public override void ToXml(XElement document)
{
RASRAFPanelTestOrder panelSetOrder = (RASRAFPanelTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
this.AddHeader(document, panelSetOrder, "RAS/RAF Panel");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("BRAF Result: " + panelSetOrder.BRAFResult, document, "F");
if (panelSetOrder.BRAFResult.ToUpper() == "DETECTED")
{
this.AddNextObxElement("BRAF Mutation Name: " + panelSetOrder.BRAFMutationName, document, "F");
this.AddNextObxElement("BRAF Alternate Nucleotide Mutation Name: " + panelSetOrder.BRAFAlternateNucleotideMutationName, document, "F");
this.AddNextObxElement("BRAF Consequence: " + panelSetOrder.BRAFConsequence, document, "F");
this.AddNextObxElement("BRAF Predicted Effect On Protein: " + panelSetOrder.BRAFPredictedEffectOnProtein, document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("KRAS Result: " + panelSetOrder.KRASResult, document, "F");
if (panelSetOrder.KRASResult.ToUpper() == "DETECTED")
{
this.AddNextObxElement("KRAS Mutation Name: " + panelSetOrder.KRASMutationName, document, "F");
this.AddNextObxElement("KRAS Alternate Nucleotide Mutation Name: " + panelSetOrder.KRASAlternateNucleotideMutationName, document, "F");
this.AddNextObxElement("KRAS Consequence: " + panelSetOrder.KRASConsequence, document, "F");
this.AddNextObxElement("KRAS Predicted Effect On Protein: " + panelSetOrder.KRASPredictedEffectOnProtein, document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("NRAS Result: " + panelSetOrder.NRASResult, document, "F");
if (panelSetOrder.NRASResult.ToUpper() == "DETECTED")
{
this.AddNextObxElement("NRAS Mutation Name: " + panelSetOrder.NRASMutationName, document, "F");
this.AddNextObxElement("NRAS Alternate Nucleotide Mutation Name: " + panelSetOrder.NRASAlternateNucleotideMutationName, document, "F");
this.AddNextObxElement("NRAS Consequence: " + panelSetOrder.NRASConsequence, document, "F");
this.AddNextObxElement("NRAS Predicted Effect On Protein: " + panelSetOrder.NRASPredictedEffectOnProtein, document, "F");
}
this.AddNextObxElement("HRAS Result: " + panelSetOrder.HRASResult, document, "F");
if (panelSetOrder.KRASResult.ToUpper() == "DETECTED")
{
this.AddNextObxElement("HRAS Mutation Name: " + panelSetOrder.HRASMutationName, document, "F");
this.AddNextObxElement("HRAS Alternate Nucleotide Mutation Name: " + panelSetOrder.HRASAlternateNucleotideMutationName, document, "F");
this.AddNextObxElement("HRAS Consequence: " + panelSetOrder.HRASConsequence, document, "F");
this.AddNextObxElement("HRAS Predicted Effect On Protein: " + panelSetOrder.HRASPredictedEffectOnProtein, document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Comment: " + panelSetOrder.Comment, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Pathologist: " + panelSetOrder.ReferenceLabSignature, document, "F");
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + panelSetOrder.ReferenceLabFinalDate.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Specimen Information:", document, "F");
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
this.AddNextObxElement("Specimen Identification: " + specimenOrder.Description, document, "F");
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.AddNextObxElement("Collection Date/Time: " + collectionDateTimeString, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Interpretation:", document, "F");
this.HandleLongString(panelSetOrder.Interpretation, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Method:", document, "F");
this.HandleLongString(panelSetOrder.Method, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("References:", document, "F");
this.HandleLongString(panelSetOrder.ReportReferences, document, "F");
this.AddNextObxElement("", document, "F");
this.HandleLongString(panelSetOrder.ReportDisclaimer, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
public override void SetResults(RASRAFPanelTestOrder testOrder, ResultCollection resultCollection)
{
testOrder.Comment = this.m_Comment;
base.SetResults(testOrder, resultCollection);
}
public virtual void SetResults(RASRAFPanelTestOrder testOrder, ResultCollection resultCollection)
{
StringBuilder interpretation = new StringBuilder();
interpretation.AppendLine(this.m_InterpretationFirstLine);
interpretation.AppendLine();
interpretation.Append(this.m_InterpretationBody);
interpretation = interpretation.Replace("[NOTDETECTEDMUTATIONLIST]", resultCollection.GetNotDetectedListString());
interpretation = interpretation.Replace("[DETECTEDMUTATIONLIST]", resultCollection.GetDetectedListString());
testOrder.Interpretation = interpretation.ToString();
StringBuilder disclaimer = new StringBuilder();
disclaimer.AppendLine(testOrder.GetLocationPerformedComment());
disclaimer.Append(m_TestDevelopment);
testOrder.ReportDisclaimer = disclaimer.ToString();
}
public override void SetResults(RASRAFPanelTestOrder testOrder, ResultCollection resultCollection)
{
testOrder.Comment = this.m_Comment;
base.SetResults(testOrder, resultCollection);
}
