private void Form1_FormClosing(object sender, FormClosingEventArgs e)
{
if (currentThread != null)
{
if (currentThread.IsAlive)
{
currentThread.Abort();
}
}
if (currRawFile != null)
{
currRawFile.ClearCachedScans();
currRawFile.Dispose();
}
if (currFDM != null)
{
currFDM.Dispose();
currFDM = null;
}
if (conn != null)
{
conn.Close();
conn.Dispose();
}
//this.Close();
}
private void GroupFeatures()
{
if (currIndex < allRawFileNames.Count)
{
var currRawFileString = allRawFileNames[currIndex];
currRawFile = new ThermoRawFile(currRawFileString);
currRawFile.Open();
var path = outputTextBox.Text + "\\" + currRawFile.Name + "_ExtractedFeatures.gcfeat";
conn = new SQLiteConnection(@"Data Source=" + path);
conn.Open();
rawFileListBox.ClearSelected();
rawFileListBox.SelectedIndex = currIndex;
if (!SQLiteIOMethods.IsGroupingDone(conn))
{
currFDM = new FeatureDetectionMethods(currRawFile);
statusLabel.Text = "Grouping Features from " + currRawFile.Name + "...";
currFDM.Finished += grouping_Finished;
//currentThread = new Thread(() => currFDM.GroupFeatures(conn));
//currentThread.Start();
}
else
{
currIndex++;
double percent = ((double)currIndex) / ((double)allRawFileNames.Count) * 100;
statusBar.Value = (int)percent;
GroupFeatures();
}
}
else
{
currRawFile.ClearCachedScans();
currRawFile.Dispose();
if (conn != null)
{
conn.Close();
conn.Dispose();
}
conn = null;
if (currFDM != null)
{
currFDM.Dispose();
currFDM = null;
}
GC.Collect();
rawFileListBox.ClearSelected();
foreach (Control control in this.Controls)
{
control.Enabled = true;
}
statusBar.Value = 100;
statusLabel.Text = "Done!";
}
}
private void deconvolution_Finished(object sender, EventArgs e)
{
if (InvokeRequired)
{
Invoke(new Action <object, EventArgs>(deconvolution_Finished), sender, e);
return;
}
statusBar.Value = (int)0;
currRawFile.ClearCachedScans();
currRawFile.Dispose();
conn.Close();
conn.Dispose();
conn = null;
currFDM.Finished -= deconvolution_Finished;
currFDM.Progress -= deconvolution_Progress;
currFDM.Dispose();
currFDM = null;
GC.Collect();
currIndex++;
extractFeatures();
}
private void grouping_Finished(object sender, EventArgs e)
{
if (InvokeRequired)
{
Invoke(new Action <object, EventArgs>(grouping_Finished), sender, e);
return;
}
statusBar.Value = (int)0;
currRawFile.ClearCachedScans();
currRawFile.Dispose();
conn.Close();
conn.Dispose();
conn = null;
currFDM.Finished -= grouping_Finished;
currFDM.Dispose();
currFDM = null;
GC.Collect();
double percent = ((double)currIndex) / ((double)allRawFileNames.Count) * 100;
statusBar.Value = (int)percent;
currIndex++;
GroupFeatures();
}
private void extractFeatures()
{
if (currIndex < allRawFileNames.Count)
{
var currRawFileString = allRawFileNames[currIndex];
currRawFile = new ThermoRawFile(currRawFileString);
currRawFile.Open();
var path = outputTextBox.Text + "\\" + currRawFile.Name + "_ExtractedFeatures.gcfeat";
conn = new SQLiteConnection(@"Data Source=" + path);
conn.Open();
rawFileListBox.ClearSelected();
rawFileListBox.SelectedIndex = currIndex;
this.Text = currIndex + "\\" + allRawFileNames.Count + " Deconvolved...";
if (!SQLiteIOMethods.IsExtractionDone(conn))
{
currFDM = new FeatureDetectionMethods(currRawFile);
statusLabel.Text = "Adding Features from " + currRawFile.Name + " to Database...";
currFDM.Progress += deconvolution_Progress;
currFDM.Finished += deconvolution_Finished;
currentThread = new Thread(() => currFDM.StepwiseSetupFinalGroups(currRawFile, conn));
currentThread.Start();
}
else
{
conn.Close();
conn.Dispose();
currRawFile.Dispose();
currIndex++;
extractFeatures();
}
}
else
{
currIndex = 0;
//statusBar.Value = 0;
//statusLabel.Text = "Starting Feature Grouping...";
//GroupFeatures();
currRawFile.ClearCachedScans();
currRawFile.Dispose();
if (conn != null)
{
conn.Close();
conn.Dispose();
}
conn = null;
if (currFDM != null)
{
currFDM.Dispose();
currFDM = null;
}
GC.Collect();
rawFileListBox.ClearSelected();
foreach (Control control in this.Controls)
{
control.Enabled = true;
}
statusBar.Value = 100;
statusLabel.Text = "Done!";
this.Text = "Deconvolution Engine";
}
}
