// gets total depth of a kMer that *may* be in the table
public int GetDepthSum(ulong mer)
{
ulong rcMer = kMers.ReverseComplement(mer, merSize);
if (rcMer < mer)
{
mer = rcMer;
}
ulong countPair = 0;
kMersTable.TryGetValue(mer, out countPair);
int plusCount = (int)(countPair >> 32);
int rcCount = (int)(countPair & 0xFFFFFFFF);
return(plusCount + rcCount);
}
public int GetPairDepth(ulong pair)
{
ulong rcPair = kMers.ReverseComplement(pair, kMerPairs.pairSize);
if (rcPair < pair)
{
pair = rcPair;
}
int pairDepth = 0;
pairsTable.TryGetValue(pair, out pairDepth);
return(pairDepth);
}
