public static QmrrlModelMissingParametersCollection GetInstance(ModelLikelihoodFactories modelLikelihoodFactories, QmrrPartialModelCollection qmrrPartialModelCollection, Dictionary <string, BestSoFar <double, TrueCollection> > PeptideToBestHlaAssignmentSoFar)
{
QmrrlModelMissingParametersCollection aQmrrlModelMissingParametersCollection = new QmrrlModelMissingParametersCollection();
foreach (QmrrPartialModel qmrrPartialModel in qmrrPartialModelCollection)
{
QmrrlModelMissingParameters aQmrrlModelMissingParameters = QmrrlModelMissingParameters.GetInstance(modelLikelihoodFactories, qmrrPartialModel, PeptideToBestHlaAssignmentSoFar[qmrrPartialModel.Peptide]);
aQmrrlModelMissingParametersCollection.Collection.Add(aQmrrlModelMissingParameters);
}
aQmrrlModelMissingParametersCollection.GridSearch = GridSearch.GetInstance("Grid");
return(aQmrrlModelMissingParametersCollection);
}
internal void FindBestQmrrParams(QmrrPartialModelCollection qmrrPartialModelCollection)
{
SpecialFunctions.CheckCondition(false, "Regression test this to be sure that switch to new optimization method didn't change anything important - cmk 5/1/2006");
QmrrlModelMissingParametersCollection aQmrrlModelMissingParametersCollection =
QmrrlModelMissingParametersCollection.GetInstance(ModelLikelihoodFactories, qmrrPartialModelCollection, PeptideToBestHlaAssignmentSoFar);
double score;
OptimizationParameterList qmrrParamsEnd = aQmrrlModelMissingParametersCollection.FindBestParams(BestParamsSoFar.Champ, out score);
BestParamsSoFar.Compare(score, qmrrParamsEnd);
}