/*
* public List<PeptideSpectrumMatch> GetPSMs(double fdr, double decoyOverTargetRatio = 1, int nbMaxPsm = 1)
* {
* return FDR.PSMs(clusters, fdr, decoyOverTargetRatio, nbMaxPsm);
* }//*/
/*
* public List<PeptideMatch> GetPeptides(double fdr)
* {
* if (peptides != null)
* return FDR.Peptides(peptides, fdr);
* else
* return null;
* }
*
* public List<ProteinGroupMatch> GetProteins(double fdr)
* {
* if (proteins != null)
* return FDR.Proteins(proteins, fdr);
* else
* return null;
* }//*/
public static int DescendingProteinScoreComparison(Precursor left, Precursor right)
{
PeptideSpectrumMatch psmLeft = left.OptimizedBestPsm();
if (psmLeft != null)
{
PeptideSpectrumMatch psmRight = right.OptimizedBestPsm();
if (psmRight != null)
{
return(-(psmLeft.ProteinScore.CompareTo(psmRight.ProteinScore)));
}
else
{
return(-1);
}
}
else
{
return(1);
}
}
public static int CompareProteinScore(Precursor left, Precursor right)
{
return(-left.OptimizedBestPsm().ProteinScore.CompareTo(right.OptimizedBestPsm().ProteinScore));
}
public static int CompareMatchingProducts(Precursor left, Precursor right)
{
return(-left.OptimizedBestPsm().MatchingProducts.CompareTo(right.OptimizedBestPsm().MatchingProducts));
}
public static int DescendingIntensityFractionComparison(Precursor left, Precursor right)
{
return(-(left.OptimizedBestPsm().MatchingIntensityFraction.CompareTo(right.OptimizedBestPsm().MatchingIntensityFraction)));
}