//public void calculateFinalDuplication()
//{
// foreach (Quartet q in ListOfInconsistent)
// {
// foreach (WrongTaxa tx in wrongPositionedTaxaList)
// {
// PartStatus pp = fromwhichPart(tx.Taxa._Taxa_Value);
// }
// }
//}
public WrongPositionStatusClass getWrongPositionStatusClass(WrongPositionStatus status, int aStart, string taStart, int aEnd, string taEnd, int bStart, string tbStart, int bEnd, string tbEnd)
{
WrongPositionStatusClass obj = new WrongPositionStatusClass();
obj.WrongPositionStatus = status;
obj.aStart = aStart;
obj.taStart = taStart;
obj.aEnd = aEnd;
obj.taEnd = taEnd;
obj.bStart = bStart;
obj.tbStart = tbStart;
obj.bEnd = bEnd;
obj.tbEnd = tbEnd;
return(obj);
}
//Main Method for calculating Wrong Position
public WrongPositionStatusClass CalculateWrongPosition(int p1, string t1, int p2, string t2, int p3, string t3, int p4, string t4, Quartet q)
{
WrongPositionStatusClass statusClass = new WrongPositionStatusClass();
WrongPositionStatus status = WrongPositionStatus.None;
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p1, t1, p2, t2, p3, t3, p4, t4, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p1, t1, p2, t2, p3, t3, p4, t4);
//return status;
return(statusClass);
}
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p2, t2, p1, t1, p3, t3, p4, t4, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p2, t2, p1, t1, p3, t3, p4, t4);
//return status;
return(statusClass);
}
//-----
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p1, t1, p2, t2, p4, t4, p3, t3, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p1, t1, p2, t2, p4, t4, p3, t3);
//return status;
return(statusClass);
}
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p2, t2, p1, t1, p4, t4, p3, t3, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p2, t2, p1, t1, p4, t4, p3, t3);
//return status;
return(statusClass);
}
//-----
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p3, t3, p4, t4, p1, t1, p2, t2, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p3, t3, p4, t4, p1, t1, p2, t2);
//return status;
return(statusClass);
}
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p3, t3, p4, t4, p2, t2, p1, t1, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p3, t3, p4, t4, p2, t2, p1, t1);
// return status;
return(statusClass);
}
//--
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p4, t4, p3, t3, p1, t1, p2, t2, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p4, t4, p3, t3, p1, t1, p2, t2);
// return status;
return(statusClass);
}
if (status == WrongPositionStatus.None)
{
status = whoisInWrongPosition(p4, t4, p3, t3, p2, t2, p1, t1, q);
}
if (status != WrongPositionStatus.None)
{
statusClass = getWrongPositionStatusClass(status, p4, t4, p3, t3, p2, t2, p1, t1);
// return status;
return(statusClass);
}
// return status;
return(statusClass);
}
//Main Method to Calculate Wrong Taxa
public void CalculateWrongTaxa()
{
WrongPositionStatusClass obj;
WrongTaxa wrongTaxa;
Quartet qQuartet;
Pair pairWithWrongTaxa;
foreach (Quartet q in ListOfInconsistent)
{
try
{
#region Calculate Wrong Taxa
Taxa t1 = getTaxa(q._First_Taxa_Value);
Taxa t2 = getTaxa(q._Second_Taxa_Value);
Taxa t3 = getTaxa(q._Third_Taxa_Value);
Taxa t4 = getTaxa(q._Fourth_Taxa_Value);
int p1 = getPosition(t1);
int p2 = getPosition(t2);
int p3 = getPosition(t3);
int p4 = getPosition(t4);
obj = new WrongPositionStatusClass();
obj = CalculateWrongPosition(p1, t1._Taxa_Value, p2, t2._Taxa_Value, p3, t3._Taxa_Value, p4, t4._Taxa_Value, q);
if (obj.WrongPositionStatus != WrongPositionStatus.None)
{
wrongTaxa = new WrongTaxa();
pairWithWrongTaxa = new Pair();
pairWithWrongTaxa.Quatret = q._Quartet_Input.Trim();
if (obj.WrongPositionStatus == WrongPositionStatus.aStartLeft)
{
wrongTaxa.wrongPositionStatus = WrongPositionStatus.aStartLeft;
wrongTaxa.Taxa = getTaxa(obj.taStart);
wrongTaxa._PositionIntheDepthOne = obj.aStart;
}
else if (obj.WrongPositionStatus == WrongPositionStatus.aStartRight)
{
wrongTaxa.wrongPositionStatus = WrongPositionStatus.aStartRight;
wrongTaxa.Taxa = getTaxa(obj.taStart);
wrongTaxa._PositionIntheDepthOne = obj.aStart;
}
else if (obj.WrongPositionStatus == WrongPositionStatus.aEndLeft)
{
wrongTaxa.wrongPositionStatus = WrongPositionStatus.aEndLeft;
wrongTaxa.Taxa = getTaxa(obj.taEnd);
wrongTaxa._PositionIntheDepthOne = obj.aEnd;
}
else if (obj.WrongPositionStatus == WrongPositionStatus.aEndRight)
{
wrongTaxa.wrongPositionStatus = WrongPositionStatus.aEndRight;
wrongTaxa.Taxa = getTaxa(obj.taEnd);
wrongTaxa._PositionIntheDepthOne = obj.aEnd;
}
else if (obj.WrongPositionStatus == WrongPositionStatus.bStartLeft)
{
wrongTaxa.wrongPositionStatus = WrongPositionStatus.bStartLeft;
wrongTaxa.Taxa = getTaxa(obj.tbStart);
wrongTaxa._PositionIntheDepthOne = obj.bStart;
}
else if (obj.WrongPositionStatus == WrongPositionStatus.bStartRight)
{
wrongTaxa.wrongPositionStatus = WrongPositionStatus.bStartRight;
wrongTaxa.Taxa = getTaxa(obj.tbStart);
wrongTaxa._PositionIntheDepthOne = obj.bStart;
}
else if (obj.WrongPositionStatus == WrongPositionStatus.bEndLeft)
{
wrongTaxa.wrongPositionStatus = WrongPositionStatus.bEndLeft;
wrongTaxa.Taxa = getTaxa(obj.tbEnd);
wrongTaxa._PositionIntheDepthOne = obj.bEnd;
}
else if (obj.WrongPositionStatus == WrongPositionStatus.bEndRight)
{
wrongTaxa.wrongPositionStatus = WrongPositionStatus.bEndRight;
wrongTaxa.Taxa = getTaxa(obj.tbEnd);
wrongTaxa._PositionIntheDepthOne = obj.bEnd;
}
qQuartet = new Quartet();
qQuartet._First_Taxa_Value = obj.taStart;
qQuartet._Second_Taxa_Value = obj.taEnd;
qQuartet._Third_Taxa_Value = obj.tbStart;
qQuartet._Fourth_Taxa_Value = obj.tbEnd;
wrongTaxa.Quartet = qQuartet;
//if (!isInWrongTaxaWithoutStatus(wrongTaxa.Taxa._Taxa_Value))
//{
wrongPositionedTaxaList.Add(wrongTaxa);
if (qQuartet == null)
{
}
if (wrongTaxa == null)
{
}
if (qQuartet._First_Taxa_Value == wrongTaxa.Taxa._Taxa_Value || qQuartet._Second_Taxa_Value == wrongTaxa.Taxa._Taxa_Value)
{
pairWithWrongTaxa.tx1 = qQuartet._First_Taxa_Value;
pairWithWrongTaxa.tx2 = qQuartet._Second_Taxa_Value;
pairWithWrongTaxa.wrongTaxa = wrongTaxa.Taxa._Taxa_Value;
}
else
{
pairWithWrongTaxa.tx1 = qQuartet._Third_Taxa_Value;
pairWithWrongTaxa.tx2 = qQuartet._Fourth_Taxa_Value;
pairWithWrongTaxa.wrongTaxa = wrongTaxa.Taxa._Taxa_Value;
}
Taxa w1 = getTaxa(pairWithWrongTaxa.tx1);
int d1 = getPosition(w1);
Taxa w2 = getTaxa(pairWithWrongTaxa.tx2);
int d2 = getPosition(w2);
int distance = -1;
if (d1 > d2)
{
distance = d1 - d2;
}
else
{
distance = d2 - d1;
}
pairWithWrongTaxa.diff = distance;
var maxDifferencedPair = ListOfPairWithWrongTaxa.Where(x => x.wrongTaxa == pairWithWrongTaxa.wrongTaxa).FirstOrDefault();
if (maxDifferencedPair != null)
{
if (maxDifferencedPair.diff < pairWithWrongTaxa.diff)
{
ListOfPairWithWrongTaxa.RemoveAll(x => x.wrongTaxa == pairWithWrongTaxa.wrongTaxa);
ListOfPairWithWrongTaxa.Add(pairWithWrongTaxa);
}
}
else
{
ListOfPairWithWrongTaxa.Add(pairWithWrongTaxa);
}
}
#endregion
}
catch (Exception ex)
{
}
}
}
