internal NotMeasuredReasons DoNonLinearProfileFittingPhotometry(
PSFFit fit,
uint[,] matrix, int x0Int, int y0Int, float x0, float y0,
float aperture, int matrixSize, bool useNumericalQadrature,
bool isFullyDisappearingOccultedStar,
uint[,] backgroundArea,
bool mayBeOcculted /* Some magic based on a pure guess */,
double refinedFWHM, float bgAnnulusFactor)
{
double distance = ImagePixel.ComputeDistance(fit.XCenter, x0, fit.YCenter, y0);
double tolerance = isFullyDisappearingOccultedStar
? m_TimesHigherPositionToleranceForFullyOccultedStars * m_PositionTolerance
: m_PositionTolerance;
if (fit.IsSolved)
{
SetPsfFitReading(fit, aperture, useNumericalQadrature, backgroundArea, bgAnnulusFactor);
}
else
{
m_Aperture = aperture;
m_XCenter = (float)fit.X0_Matrix;
m_YCenter = (float)fit.Y0_Matrix;
m_TotalReading = 0;
m_TotalBackground = 0;
}
if (!fit.IsSolved || // The PSF solution failed, mark the reading invalid
(distance > tolerance && !mayBeOcculted) || // If this doesn't look like a full disappearance, then make the reading invalid
(fit.FWHM < 0.5 * refinedFWHM || fit.FWHM > 1.5 * refinedFWHM) // The FWHM is too small or too large, make the reading invalid
)
{
return(!fit.IsSolved
? NotMeasuredReasons.MeasurementPSFFittingFailed
: (distance > tolerance && !mayBeOcculted)
? NotMeasuredReasons.DistanceToleranceTooHighForNonFullDisappearingOccultedStar
: NotMeasuredReasons.FWHMOutOfRange);
}
else
{
return(NotMeasuredReasons.MeasuredSuccessfully);
}
}
internal NotMeasuredReasons DoLinearProfileFittingOfAveragedMoodelPhotometry(
PSFFit fit,
uint[,] matrix, int x0Int, int y0Int, float x0, float y0, float modelFWHM,
float aperture, int matrixSize, bool useNumericalQadrature,
bool isFullyDisappearingOccultedStar,
uint[,] backgroundArea,
bool mayBeOcculted /* Some magic based on a pure guess */,
float bgAnnulusFactor,
IBackgroundModelProvider backgroundModel)
{
double distance = ImagePixel.ComputeDistance(fit.XCenter, x0, fit.YCenter, y0);
double tolerance = isFullyDisappearingOccultedStar
? m_TimesHigherPositionToleranceForFullyOccultedStars * m_PositionTolerance
: m_PositionTolerance;
// We first go and do the measurement anyway
if (fit.IsSolved)
{
SetPsfFitReading(fit, aperture, useNumericalQadrature, backgroundArea, bgAnnulusFactor, backgroundModel);
}
else
{
m_Aperture = aperture;
m_XCenter = (float)fit.X0_Matrix;
m_YCenter = (float)fit.Y0_Matrix;
m_TotalReading = 0;
m_TotalBackground = 0;
}
if (!fit.IsSolved || // The PSF solution failed, mark the reading invalid
(distance > tolerance && !mayBeOcculted) // If this doesn't look like a full disappearance, then make the reading invalid
)
{
return(!fit.IsSolved
? NotMeasuredReasons.MeasurementPSFFittingFailed
: NotMeasuredReasons.DistanceToleranceTooHighForNonFullDisappearingOccultedStar);
}
else
{
return(NotMeasuredReasons.MeasuredSuccessfully);
}
}
internal NotMeasuredReasons DoOptimalExtractionPhotometry(
PSFFit fit,
uint[,] matrix, int x0Int, int y0Int, float x0, float y0,
float aperture, int matrixSize, bool isFullyDisappearingOccultedStar,
uint[,] backgroundArea,
bool mayBeOcculted /* Some magic based on a pure guess */,
double refinedFWHM, float bgAnnulusFactor)
{
// Proceed as with PSF Non linear, Then find the variance of the PSF fit and use a weight based on the residuals of the PSF fit
// Signal[x, y] = PSF(x, y) + weight * Residual(x, y)
double distance = ImagePixel.ComputeDistance(fit.XCenter, x0, fit.YCenter, y0);
double tolerance = isFullyDisappearingOccultedStar
? m_TimesHigherPositionToleranceForFullyOccultedStars * m_PositionTolerance
: m_PositionTolerance;
float psfBackground = (float)fit.I0;
// almost like aperture
if (matrix.GetLength(0) != 17 && matrix.GetLength(0) != 35)
{
throw new ApplicationException("Measurement error. Correlation: AFP-101B");
}
int side = matrix.GetLength(0);
float halfSide = side * 1f / 2f;
m_HasSaturatedPixels = false;
m_PSFBackground = double.NaN;
m_FoundBestPSFFit = null;
m_XCenter = x0 - x0Int + halfSide;
m_YCenter = y0 - y0Int + halfSide;
m_Aperture = aperture;
m_PixelData = matrix;
m_TotalPixels = 0;
double varR0Sq = fit.GetVariance();
varR0Sq = varR0Sq * varR0Sq * 2;
double deltaX = fit.X0_Matrix - m_XCenter;
double deltaY = fit.Y0_Matrix - m_YCenter;
m_TotalReading = GetReading(
m_Aperture,
m_PixelData, side, side,
m_XCenter, m_YCenter,
delegate(int x, int y)
{
double videoPixel = m_PixelData[x, y];
double psfValue = fit.GetValue(x + deltaX, y + deltaY);
if (fit.UsesBackgroundModel)
{
psfValue += fit.GetFittedBackgroundModelValue(x + deltaX, y + deltaY);
}
double residual = videoPixel - psfValue;
double weight = Math.Exp(-residual * residual / varR0Sq);
return(psfValue + residual * weight);
},
ref m_TotalPixels);
if (m_TotalPixels > 0)
{
if (m_BackgroundMethod == TangraConfig.BackgroundMethod.PSFBackground)
{
if (float.IsNaN(psfBackground))
{
m_TotalBackground = 0;
}
else
{
m_TotalBackground = (uint)Math.Round(m_TotalPixels * psfBackground);
}
}
else if (m_BackgroundMethod == TangraConfig.BackgroundMethod.Background3DPolynomial)
{
if (!fit.UsesBackgroundModel)
{
throw new InvalidOperationException("3D-Polynomial was not applied correctly.");
}
m_TotalBackground = Integration.IntegrationOverCircularArea(
(x, y) => fit.GetFittedBackgroundModelValue(x, y),
m_Aperture);
}
else if (m_BackgroundMethod != TangraConfig.BackgroundMethod.PSFBackground)
{
int offset = (35 - fit.MatrixSize) / 2;
double bgFromAnnulus = GetBackground(backgroundArea, m_Aperture, m_XCenter + offset, m_YCenter + offset, bgAnnulusFactor);
m_TotalBackground = (uint)Math.Round(m_TotalPixels * (float)bgFromAnnulus);
}
else
{
throw new ApplicationException("Measurement error. Correlation: AFP-102B");
}
if (!fit.IsSolved || // The PSF solution failed, mark the reading invalid
(distance > tolerance && !mayBeOcculted) || // If this doesn't look like a full disappearance, then make the reading invalid
(fit.FWHM < 0.75 * refinedFWHM || fit.FWHM > 1.25 * refinedFWHM) // The FWHM is too small or too large, make the reading invalid
)
{
return(!fit.IsSolved
? NotMeasuredReasons.MeasurementPSFFittingFailed
: (distance > tolerance && !mayBeOcculted)
? NotMeasuredReasons.DistanceToleranceTooHighForNonFullDisappearingOccultedStar
: NotMeasuredReasons.FWHMOutOfRange);
}
}
else
{
// We can't do much here, but this should never happen (??)
m_TotalBackground = 0;
m_TotalReading = 0;
return(NotMeasuredReasons.NoPixelsToMeasure);
}
return(NotMeasuredReasons.MeasuredSuccessfully);
}
public NotMeasuredReasons MeasureObject(
IImagePixel center,
uint[,] data,
uint[,] backgroundPixels,
int bpp,
TangraConfig.PreProcessingFilter filter,
TangraConfig.PhotometryReductionMethod reductionMethod,
TangraConfig.PsfQuadrature psfQuadrature,
TangraConfig.PsfFittingMethod psfFittingMethod,
float aperture,
double refinedFWHM,
float refinedAverageFWHM,
IMeasurableObject measurableObject,
IImagePixel[] objectsInGroup,
float[] aperturesInGroup,
bool fullDisappearance)
{
// NOTE: This is how the center of the pixel area passed in data and background arrays is determined
// TODO: Pass the center as an argument
int centerX = (int)Math.Round(center.XDouble);
int centerY = (int)Math.Round(center.YDouble);
float msrX0 = (float)center.XDouble;
float msrY0 = (float)center.YDouble;
float bgAnnulusFactor = 1;
switch (filter)
{
case TangraConfig.PreProcessingFilter.LowPassFilter:
data = ImageFilters.LowPassFilter(data, bpp, true);
backgroundPixels = ImageFilters.LowPassFilter(backgroundPixels, bpp, true);
break;
case TangraConfig.PreProcessingFilter.LowPassDifferenceFilter:
data = ImageFilters.LowPassDifferenceFilter(data, bpp, true);
backgroundPixels = ImageFilters.LowPassDifferenceFilter(backgroundPixels, bpp, true);
break;
default:
break;
}
float modelFWHM = float.NaN;
if (psfFittingMethod == TangraConfig.PsfFittingMethod.LinearFitOfAveragedModel)
{
if (TangraConfig.Settings.Photometry.UseUserSpecifiedFWHM)
{
modelFWHM = TangraConfig.Settings.Photometry.UserSpecifiedFWHM;
}
else
{
modelFWHM = refinedAverageFWHM;
}
}
DoublePSFFit doublefit = null;
PSFFit fit = null;
IBackgroundModelProvider backgroundModel = null;
// 1 - Fit a PSF to the current obejct
if (objectsInGroup != null && objectsInGroup.Length == 2)
{
// 1A - When this is a star group
int x1 = (int)Math.Round((data.GetLength(0) / 2) + objectsInGroup[0].XDouble - center.XDouble);
int y1 = (int)Math.Round((data.GetLength(0) / 2) + objectsInGroup[0].YDouble - center.YDouble);
int x2 = (int)Math.Round((data.GetLength(0) / 2) + objectsInGroup[1].XDouble - center.XDouble);
int y2 = (int)Math.Round((data.GetLength(0) / 2) + objectsInGroup[1].YDouble - center.YDouble);
doublefit = new DoublePSFFit(centerX, centerY);
if (psfFittingMethod == TangraConfig.PsfFittingMethod.LinearFitOfAveragedModel &&
!float.IsNaN(modelFWHM))
{
doublefit.FittingMethod = PSFFittingMethod.LinearFitOfAveragedModel;
doublefit.SetAveragedModelFWHM(modelFWHM);
}
doublefit.Fit(data, x1, y1, x2, y2);
PSFFit star1 = doublefit.GetGaussian1();
PSFFit star2 = doublefit.GetGaussian2();
if (m_BackgroundMethod == TangraConfig.BackgroundMethod.Background3DPolynomial)
{
var bg3dFit = new Background3DPolynomialFit();
bg3dFit.Fit(data, star1, star2);
doublefit.Fit(data, bg3dFit, x1, y1, x2, y2);
star1 = doublefit.GetGaussian1();
star2 = doublefit.GetGaussian2();
backgroundModel = bg3dFit;
}
double d1 = ImagePixel.ComputeDistance(measurableObject.Center.XDouble, doublefit.X1Center, measurableObject.Center.YDouble, doublefit.Y1Center);
double d2 = ImagePixel.ComputeDistance(measurableObject.Center.XDouble, doublefit.X2Center, measurableObject.Center.YDouble, doublefit.Y2Center);
fit = (d1 < d2) ? star1 : star2;
if (reductionMethod == TangraConfig.PhotometryReductionMethod.AperturePhotometry)
{
// NOTE: If aperture photometry is used, we measure the double object in a single larger aperture centered at the middle
double alpha = Math.Atan((star2.YCenter - star1.YCenter) / (star2.XCenter - star1.XCenter));
float dx = (float)((star1.FWHM - star2.FWHM) * Math.Cos(alpha));
float dy = (float)((star1.FWHM - star2.FWHM) * Math.Sin(alpha));
msrX0 = (float)(star1.XCenter - star1.FWHM + star2.XCenter + star2.FWHM) / 2.0f - dx;
msrY0 = (float)(star1.YCenter - star1.FWHM + star2.YCenter + star2.FWHM) / 2.0f - dy;
aperture = aperturesInGroup.Sum();
bgAnnulusFactor = 0.67f;
}
}
else if (reductionMethod != TangraConfig.PhotometryReductionMethod.AperturePhotometry)
{
// 1B - When this is a single star
fit = new PSFFit(centerX, centerY);
if (psfFittingMethod == TangraConfig.PsfFittingMethod.LinearFitOfAveragedModel &&
!float.IsNaN(modelFWHM))
{
fit.FittingMethod = PSFFittingMethod.LinearFitOfAveragedModel;
fit.SetAveragedModelFWHM(modelFWHM);
}
fit.Fit(data, measurableObject.PsfFittingMatrixSize);
if (m_BackgroundMethod == TangraConfig.BackgroundMethod.Background3DPolynomial)
{
// If 3D Poly Background is used then fit the background, and supply it to the PSF Fitting
var bg3dFit = new Background3DPolynomialFit();
bg3dFit.Fit(backgroundPixels, fit, null);
backgroundModel = bg3dFit;
if (psfFittingMethod != TangraConfig.PsfFittingMethod.LinearFitOfAveragedModel)
{
/* 3D Poly modelling works in a direct fit only with non-linear fitting */
fit.Fit(backgroundPixels, bg3dFit, measurableObject.PsfFittingMatrixSize);
}
}
}
else if (
reductionMethod == TangraConfig.PhotometryReductionMethod.AperturePhotometry &&
m_BackgroundMethod == TangraConfig.BackgroundMethod.Background3DPolynomial)
{
// 1C - Single star with aperture photometry and 3D Poly Background
var bg3dFit = new Background3DPolynomialFit();
bg3dFit.Fit(backgroundPixels, (float)(centerX - msrX0 + 17), (float)(centerY - msrY0 + 17), 2 * aperture);
backgroundModel = bg3dFit;
}
// 2 - Do the actual photometric measurements (signal and background) based on the selected methods
if (reductionMethod == TangraConfig.PhotometryReductionMethod.PsfPhotometry)
{
// 2A - PSF Photometry
if (TangraConfig.Settings.Photometry.PsfFittingMethod == TangraConfig.PsfFittingMethod.DirectNonLinearFit)
{
return(DoNonLinearProfileFittingPhotometry(
fit,
data, centerX, centerY, msrX0, msrY0,
aperture,
measurableObject.PsfFittingMatrixSize,
psfQuadrature == TangraConfig.PsfQuadrature.NumericalInAperture,
measurableObject.IsOccultedStar && fullDisappearance,
backgroundPixels,
measurableObject.MayHaveDisappeared,
refinedFWHM,
bgAnnulusFactor));
}
else if (psfFittingMethod == TangraConfig.PsfFittingMethod.LinearFitOfAveragedModel)
{
return(DoLinearProfileFittingOfAveragedMoodelPhotometry(
fit,
data, centerX, centerY, msrX0, msrY0, modelFWHM,
aperture,
measurableObject.PsfFittingMatrixSize,
psfQuadrature == TangraConfig.PsfQuadrature.NumericalInAperture,
measurableObject.IsOccultedStar && fullDisappearance,
backgroundPixels,
measurableObject.MayHaveDisappeared,
bgAnnulusFactor, backgroundModel));
}
else
{
throw new NotImplementedException();
}
}
else if (reductionMethod == TangraConfig.PhotometryReductionMethod.AperturePhotometry)
{
return(DoAperturePhotometry(
data, centerX, centerY, msrX0, msrY0,
aperture,
measurableObject.PsfFittingMatrixSize,
backgroundPixels, bgAnnulusFactor, backgroundModel,
measurableObject.Center.X, measurableObject.Center.Y));
}
else if (reductionMethod == TangraConfig.PhotometryReductionMethod.OptimalExtraction)
{
return(DoOptimalExtractionPhotometry(
fit,
data, centerX, centerY, msrX0, msrY0,
aperture,
measurableObject.PsfFittingMatrixSize,
measurableObject.IsOccultedStar && fullDisappearance,
backgroundPixels,
measurableObject.MayHaveDisappeared,
refinedFWHM, bgAnnulusFactor));
}
else
{
throw new ArgumentOutOfRangeException("reductionMethod");
}
}