private void AddAFile(string filepath)
{
var theExtension = Path.GetExtension(filepath).ToLowerInvariant();
theExtension = theExtension == ".gz" ? Path.GetExtension(Path.GetFileNameWithoutExtension(filepath)).ToLowerInvariant() : theExtension;
switch (theExtension)
{
case ".fastq":
RNASeqFastqDataGrid rnaSeqFastq = new RNASeqFastqDataGrid(filepath);
RnaSeqFastqCollection.Add(rnaSeqFastq);
UpdateOutputFolderTextbox();
break;
case ".toml":
TomlTable tomlFile = null;
try
{
tomlFile = Toml.ReadFile(filepath);
}
catch (Exception)
{
break;
}
var ye1 = Toml.ReadFile <Options>(filepath);
AddTaskToCollection(ye1);
break;
}
}
private void AddAFile(string filepath)
{
if (SraCollection.Count == 0)
{
var theExtension = Path.GetExtension(filepath).ToLowerInvariant();
theExtension = theExtension == ".gz" ? Path.GetExtension(Path.GetFileNameWithoutExtension(filepath)).ToLowerInvariant() : theExtension;
switch (theExtension)
{
case ".fastq":
if (Path.GetFileName(filepath).Contains("_1") || Path.GetFileName(filepath).Contains("_2"))
{
RNASeqFastqDataGrid rnaSeqFastq = new RNASeqFastqDataGrid(filepath);
RnaSeqFastqCollection.Add(rnaSeqFastq);
UpdateOutputFolderTextbox();
break;
}
else
{
MessageBox.Show("FASTQ files must have *_1.fastq and *_2.fastq extensions.", "Run Workflows", MessageBoxButton.OK, MessageBoxImage.Information);
return;
}
//case ".toml":
// TomlTable tomlFile = null;
// try
// {
// tomlFile = Toml.ReadFile(filepath);
// }
// catch (Exception)
// {
// break;
// }
// var ye1 = Toml.ReadFile<Options>(filepath);
// AddTaskToCollection(ye1);
// break;
}
}
else
{
MessageBox.Show("User already added SRA number. Please only choose one input: 1) SRA accession 2) FASTQ files.", "Run Workflows", MessageBoxButton.OK, MessageBoxImage.Information);
return;
}
}
