public FhirService(Uri serviceBase)
{
store = DependencyCoupler.Inject<IFhirStore>(); // new MongoFhirStore();
_index = DependencyCoupler.Inject<IFhirIndex>(); // Factory.Index;
_importer = DependencyCoupler.Inject<ResourceImporter>();
exporter = DependencyCoupler.Inject<ResourceExporter>();
pager = new Pager(store);
Endpoint = serviceBase;
}
public FhirService(Uri serviceBase)
{
_store = DependencyCoupler.Inject <IFhirStore>(); // new MongoFhirStore();
_index = DependencyCoupler.Inject <IFhirIndex>(); // Factory.Index;
_importer = DependencyCoupler.Inject <ResourceImporter>();
_exporter = DependencyCoupler.Inject <ResourceExporter>();
_pager = new Pager(_store);
Endpoint = serviceBase;
}
public static ResourceImporter GetResourceImporter()
{
IFhirStore store = Spark.Store.MongoStoreFactory.GetMongoFhirStore();
ResourceImporter importer = new ResourceImporter(store, Settings.Endpoint);
importer.SharedEndpoints.Add("http://hl7.org/fhir/");
importer.SharedEndpoints.Add("localhost");
importer.SharedEndpoints.Add("localhost.");
return importer;
}
public FhirService(Uri endpoint)
{
//refac: store = DependencyCoupler.Inject<IFhirStore>(); // new MongoFhirStore();
store = DependencyCoupler.Inject <IFhirStore>();
tagstore = DependencyCoupler.Inject <ITagStore>();
generator = DependencyCoupler.Inject <IGenerator>();
index = DependencyCoupler.Inject <IFhirIndex>(); // Factory.Index;
importer = DependencyCoupler.Inject <ResourceImporter>();
exporter = DependencyCoupler.Inject <ResourceExporter>();
pager = new Pager(store, exporter);
Endpoint = endpoint;
}
public FhirService(Uri endpoint)
{
//refac: store = DependencyCoupler.Inject<IFhirStore>(); // new MongoFhirStore();
store = DependencyCoupler.Inject<IFhirStore>();
tagstore = DependencyCoupler.Inject<ITagStore>();
generator = DependencyCoupler.Inject<IGenerator>();
index = DependencyCoupler.Inject<IFhirIndex>(); // Factory.Index;
importer = DependencyCoupler.Inject<ResourceImporter>();
exporter = DependencyCoupler.Inject<ResourceExporter>();
pager = new Pager(store, exporter);
Endpoint = endpoint;
}
public void TestIdReassignOnImport()
{
var importer = new ResourceImporter(new Uri("http://fhir.furore.com/fhir/"));
importer.AddSharedIdSpacePrefix("http://localhost");
importer.QueueNewResourceEntry(new Uri("http://someserver.nl/fhir/patient/@1012"), new Patient());
importer.QueueNewResourceEntry(new Uri("http://fhir.furore.com/fhir/patient/@13"), new Patient());
importer.QueueNewResourceEntry(new Uri("http://localhost/svc/patient/@24"), new Patient());
importer.QueueNewResourceEntry(new Uri("cid:332211223316"), new Patient());
importer.QueueNewDeletedEntry(new Uri("http://someserver.nl/fhir/patient/@17"));
var imported = importer.ImportQueued();
Assert.AreEqual("patient/@1", imported.First().Id.ToString());
Assert.AreEqual("patient/@13", imported.Skip(1).First().Id.ToString());
Assert.AreEqual("patient/@24", imported.Skip(2).First().Id.ToString());
Assert.AreEqual("patient/@25", imported.Skip(3).First().Id.ToString());
Assert.AreEqual("patient/@26", imported.Skip(4).First().Id.ToString());
}
public void TestUriReassignments()
{
Patient p = new Patient();
p.Link = new List<ResourceReference>() { new ResourceReference { Type = "patient", Reference = "patient/@10" } };
p.Provider = new ResourceReference() { Type = "organization", Reference = "http://outside.com/fhir/organization/@100" };
p.Contact = new List<Patient.ContactComponent>() {
new Patient.ContactComponent() {
Organization = new ResourceReference() { Type = "organization", Reference = "http://hl7.org/fhir/organization/@200" } } };
p.Photo = new List<Attachment>()
{ new Attachment() { Url = new Uri("media/@300", UriKind.Relative) },
new Attachment() { Url = new Uri("#containedPhoto", UriKind.Relative) },
new Attachment() { Url = new Uri("http://www.nu.nl/fotos/1.jpg", UriKind.Absolute) }
};
var pic300 = new Media();
pic300.Content = new Attachment() {
Url = new Uri("http://hl7.org/fhir/binary/@300") };
var importer = new ResourceImporter(new Uri("http://hl7.org/fhir"));
importer.QueueNewResourceEntry("patient", "1", p);
importer.QueueNewResourceEntry("patient", "10", new Patient());
importer.QueueNewResourceEntry(new Uri("http://outside.com/fhir/organization/@100"), new Organization());
importer.QueueNewResourceEntry("media", "300", pic300);
var result = importer.ImportQueued();
var p1 = (ResourceEntry<Patient>)result.First();
Assert.AreEqual("patient/@10", p1.Resource.Link[0].Reference);
Assert.AreEqual("organization/@11", p1.Resource.Provider.Reference);
Assert.AreEqual("organization/@200", p1.Resource.Contact.First().Organization.Reference);
Assert.AreEqual("media/@300", p1.Resource.Photo.First().Url.ToString());
Assert.AreEqual("#containedPhoto", p1.Resource.Photo.Skip(1).First().Url.ToString());
Assert.AreEqual("http://www.nu.nl/fotos/1.jpg", p1.Resource.Photo.Skip(2).First().Url.ToString());
Assert.AreEqual("binary/@300", pic300.Content.Url.ToString());
}
public void SimpleStoreSpeedTest()
{
Stopwatch w = new Stopwatch();
w.Start();
_store.EraseData();
w.Stop();
Debug.Print("Erasing data took {0} ms", w.ElapsedMilliseconds);
w.Restart();
//var errs = new ErrorList();
//var entries = new List<BundleEntry>();
//for (var i = 0; i < 500; i++)
//{
// var xml = FhirSerializer.SerializeBundleEntryToXml(_stockPatient);
// var copy = FhirParser.ParseBundleEntryFromXml(xml, errs);
// var rl = ResourceLocation.Build("patient", i.ToString());
// copy.Id = rl.ToUri();
// rl.VersionId = "1";
// copy.SelfLink = rl.ToUri();
// entries.Add(copy);
//}
var bundle = loadExamples();
w.Stop();
Debug.Print("Loading examples took {0} ms", w.ElapsedMilliseconds);
w.Restart();
foreach (var entry in bundle.Entries)
{
var rl = new ResourceLocation(entry.Id);
rl.VersionId = "1";
entry.SelfLink = rl.ToUri();
}
var importer = new ResourceImporter(new Uri("http://localhost"));
importer.AddSharedIdSpacePrefix("http://hl7.org/fhir/");
foreach (var be in bundle.Entries)
importer.QueueNewEntry(be);
w.Stop();
Debug.Print("Queueing examples took {0} ms", w.ElapsedMilliseconds);
w.Restart();
var entriesToStore = importer.ImportQueued();
w.Stop();
Debug.Print("Importing examples took {0} ms", w.ElapsedMilliseconds);
w.Restart();
var guid = Guid.NewGuid();
_store.AddEntries(entriesToStore,guid);
w.Stop();
Debug.Print("Storing {0} patients took {1} ms", entriesToStore.Count(), w.Elapsed.Milliseconds);
}
public void UpdateAndCheckHistory()
{
_store.EraseData();
var importer = new ResourceImporter(new Uri("http://localhost"));
importer.QueueNewEntry(_stockPatient);
importer.QueueNewEntry(_stockOrg);
var dd = (ResourceEntry)clone(_stockPatient);
((Patient)dd.Resource).Name[0].Text = "Donald Duck";
dd.Links.SelfLink = null;
importer.QueueNewEntry(dd);
importer.QueueNewDeletedEntry(_stockPatient.Id);
importer.QueueNewDeletedEntry(_stockOrg.Id);
var imported = importer.ImportQueued();
var origId = imported.First().Id;
_store.AddEntries(imported);
var history = _store.ListVersionsById(origId)
.OrderBy(be => new ResourceLocation(be.Links.SelfLink).VersionId);
Assert.IsNotNull(history);
Assert.AreEqual(3, history.Count());
Assert.IsTrue(history.All(be => be.Id == origId));
Assert.IsTrue(history.Last() is DeletedEntry);
var ver1 = new ResourceLocation(history.First().Links.SelfLink).VersionId;
var ver2 = new ResourceLocation(history.ElementAt(1).Links.SelfLink).VersionId;
var ver3 = new ResourceLocation(history.ElementAt(2).Links.SelfLink).VersionId;
Assert.AreNotEqual(Int32.Parse(ver1), Int32.Parse(ver2));
Assert.AreNotEqual(Int32.Parse(ver2), Int32.Parse(ver3));
Assert.AreNotEqual(Int32.Parse(ver1), Int32.Parse(ver3));
var firstVersionAsEntry = _store.FindVersionByVersionId(history.First().Links.SelfLink);
//TODO: There's a bug here...the cr+lf in the _stockPatient gets translated to \r\n in the 'firstVersion'.
//Cannot see this in the stored version though.
Assert.AreEqual(FhirSerializer.SerializeResourceToJson(_stockPatient.Resource),
FhirSerializer.SerializeResourceToJson(((ResourceEntry)firstVersionAsEntry).Resource));
var secondVersionAsEntry = _store.FindVersionByVersionId(history.ElementAt(1).Links.SelfLink);
Assert.AreEqual("Donald Duck", ((Patient)((ResourceEntry)secondVersionAsEntry).Resource).Name[0].Text);
var allHistory = _store.ListVersions();
Assert.AreEqual(5, allHistory.Count());
Assert.AreEqual(3, allHistory.Count(be => be.Id.ToString().Contains("patient")));
Assert.AreEqual(2, allHistory.Count(be => be.Id.ToString().Contains("organization")));
Assert.AreEqual(2, allHistory.Count(be => be is DeletedEntry));
}
public void ListRecordsByResourceType()
{
_store.EraseData();
DateTimeOffset now = DateTimeOffset.UtcNow;
DateTime stampi = new DateTime(now.Ticks, DateTimeKind.Unspecified);
stampi = stampi.AddHours(5);
DateTimeOffset stamp = new DateTimeOffset(stampi, new TimeSpan(5, 0, 0));
var importer = new ResourceImporter(new Uri("http://localhost"));
for (int i = 0; i < 5; i++)
{
var tst = _stockPatients[i];
importer.QueueNewEntry(tst);
}
for (int i = 0; i < 5; i++)
{
var tst = _stockOrgs[i];
importer.QueueNewEntry(tst);
}
importer.QueueNewDeletedEntry("patient", "31415");
var imported = importer.ImportQueued();
_store.AddEntries(imported);
var recentList = _store.ListCollection("patient");
Assert.AreEqual(5, recentList.Count(), "Should not contain deleted entries");
var recentOrgList = _store.ListCollection("organization");
Assert.AreEqual(5, recentOrgList.Count(), "Should not contain patients");
recentList = _store.ListCollection("patient", includeDeleted: true);
Assert.AreEqual(6, recentList.Count(), "Should contain deleted entries");
var recentListWithFilter = _store.ListCollection("patient", limit: 3);
Assert.AreEqual(3, recentListWithFilter.Count());
var recentListWithFilter2 = _store.ListCollection("patient", since: now.AddMinutes(-1));
Assert.AreEqual(5, recentListWithFilter2.Count());
var recentListWithFilter3 = _store.ListCollection("patient", since: now.AddMinutes(-1), limit: 3);
Assert.AreEqual(3, recentListWithFilter3.Count());
}
public void FullExampleImport()
{
ExampleImporter examples = new ExampleImporter();
examples.ImportZip("examples.zip");
var importer = new ResourceImporter(new Uri("http://hl7.org/fhir/"));
foreach (var resourceName in ModelInfo.SupportedResources)
{
var key = resourceName.ToLower();
if (examples.ImportedEntries.ContainsKey(key))
{
var exampleEntries = examples.ImportedEntries[key];
foreach (var exampleEntry in exampleEntries)
importer.QueueNewEntry(exampleEntry);
}
}
var importedEntries = importer.ImportQueued();
}
