/* ------------------------
* Constructor
* ------------------------ */
/** Construct the singular value decomposition
* @param A Rectangular matrix
* @return Structure to access U, S and V.
*/
public SingularValueDecomposition(double[][] Arg)
{
// Derived from LINPACK code.
// Initialize.
double[][] A = Arg;
m = Arg.Length;
n = Arg[0].Length;
int nu = Math.Max(m, n);
s = new double[Math.Min(m + 1, n)];
U = new double[m][];
for (int i = 0; i < m; i++)
{
U[i] = new double[nu];
}
V = new double[n][];
for (int i = 0; i < n; i++)
{
V[i] = new double[n];
}
double[] e = new double[n];
double[] work = new double[m];
Boolean wantu = true;
Boolean wantv = true;
// Reduce A to bidiagonal form, storing the diagonal elements
// in s and the super-diagonal elements in e.
int nct = Math.Min(m - 1, n);
int nrt = Math.Max(0, Math.Min(n - 2, m));
for (int k = 0; k < Math.Max(nct, nrt); k++)
{
if (k < nct)
{
// Compute the transformation for the k-th column and
// place the k-th diagonal in s[k].
// Compute 2-norm of k-th column without under/overflow.
s[k] = 0;
for (int i = k; i < m; i++)
{
s[k] = MathTools.hypot(s[k], A[i][k]);
}
if (s[k] != 0.0)
{
if (A[k][k] < 0.0)
{
s[k] = -s[k];
}
for (int i = k; i < m; i++)
{
A[i][k] /= s[k];
}
A[k][k] += 1.0;
}
s[k] = -s[k];
}
for (int j = k + 1; j < n; j++)
{
if ((k < nct) & (s[k] != 0.0))
{
// Apply the transformation.
double t = 0;
for (int i = k; i < m; i++)
{
t += A[i][k] * A[i][j];
}
t = -t / A[k][k];
for (int i = k; i < m; i++)
{
A[i][j] += t * A[i][k];
}
}
// Place the k-th row of A into e for the
// subsequent calculation of the row transformation.
e[j] = A[k][j];
}
if (wantu & (k < nct))
{
// Place the transformation in U for subsequent back
// multiplication.
for (int i = k; i < m; i++)
{
U[i][k] = A[i][k];
}
}
if (k < nrt)
{
// Compute the k-th row transformation and place the
// k-th super-diagonal in e[k].
// Compute 2-norm without under/overflow.
e[k] = 0;
for (int i = k + 1; i < n; i++)
{
e[k] = MathTools.hypot(e[k], e[i]);
}
if (e[k] != 0.0)
{
if (e[k + 1] < 0.0)
{
e[k] = -e[k];
}
for (int i = k + 1; i < n; i++)
{
e[i] /= e[k];
}
e[k + 1] += 1.0;
}
e[k] = -e[k];
if ((k + 1 < m) & (e[k] != 0.0))
{
// Apply the transformation.
for (int i = k + 1; i < m; i++)
{
work[i] = 0.0;
}
for (int j = k + 1; j < n; j++)
{
for (int i = k + 1; i < m; i++)
{
work[i] += e[j] * A[i][j];
}
}
for (int j = k + 1; j < n; j++)
{
double t = -e[j] / e[k + 1];
for (int i = k + 1; i < m; i++)
{
A[i][j] += t * work[i];
}
}
}
if (wantv)
{
// Place the transformation in V for subsequent
// back multiplication.
for (int i = k + 1; i < n; i++)
{
V[i][k] = e[i];
}
}
}
}
// Set up the final bidiagonal matrix or order p.
int p = Math.Min(n, m + 1);
if (nct < n)
{
s[nct] = A[nct][nct];
}
if (m < p)
{
s[p - 1] = 0.0;
}
if (nrt + 1 < p)
{
e[nrt] = A[nrt][p - 1];
}
e[p - 1] = 0.0;
// If required, generate U.
if (wantu)
{
for (int j = nct; j < nu; j++)
{
for (int i = 0; i < m; i++)
{
U[i][j] = 0.0;
}
U[j][j] = 1.0;
}
for (int k = nct - 1; k >= 0; k--)
{
if (s[k] != 0.0)
{
for (int j = k + 1; j < nu; j++)
{
double t = 0;
for (int i = k; i < m; i++)
{
t += U[i][k] * U[i][j];
}
t = -t / U[k][k];
for (int i = k; i < m; i++)
{
U[i][j] += t * U[i][k];
}
}
for (int i = k; i < m; i++)
{
U[i][k] = -U[i][k];
}
U[k][k] = 1.0 + U[k][k];
for (int i = 0; i < k - 1; i++)
{
U[i][k] = 0.0;
}
}
else
{
for (int i = 0; i < m; i++)
{
U[i][k] = 0.0;
}
U[k][k] = 1.0;
}
}
}
// If required, generate V.
if (wantv)
{
for (int k = n - 1; k >= 0; k--)
{
if ((k < nrt) & (e[k] != 0.0))
{
for (int j = k + 1; j < nu; j++)
{
double t = 0;
for (int i = k + 1; i < n; i++)
{
t += V[i][k] * V[i][j];
}
t = -t / V[k + 1][k];
for (int i = k + 1; i < n; i++)
{
V[i][j] += t * V[i][k];
}
}
}
for (int i = 0; i < n; i++)
{
V[i][k] = 0.0;
}
V[k][k] = 1.0;
}
}
// Main iteration loop for the singular values.
int pp = p - 1;
int iter = 0;
double eps = Math.Pow(2.0, -52.0);
while (p > 0)
{
int k, kase;
// Here is where a test for too many iterations would go.
// This section of the program inspects for
// negligible elements in the s and e arrays. On
// completion the variables kase and k are set as follows.
// kase = 1 if s(p) and e[k-1] are negligible and k<p
// kase = 2 if s(k) is negligible and k<p
// kase = 3 if e[k-1] is negligible, k<p, and
// s(k), ..., s(p) are not negligible (qr step).
// kase = 4 if e(p-1) is negligible (convergence).
for (k = p - 2; k >= -1; k--)
{
if (k == -1)
{
break;
}
if (Math.Abs(e[k]) <= eps * (Math.Abs(s[k]) + Math.Abs(s[k + 1])))
{
e[k] = 0.0;
break;
}
}
if (k == p - 2)
{
kase = 4;
}
else
{
int ks;
for (ks = p - 1; ks >= k; ks--)
{
if (ks == k)
{
break;
}
double t = (ks != p ? Math.Abs(e[ks]) : 0d) +
(ks != k + 1 ? Math.Abs(e[ks - 1]) : 0d);
if (Math.Abs(s[ks]) <= eps * t)
{
s[ks] = 0.0;
break;
}
}
if (ks == k)
{
kase = 3;
}
else if (ks == p - 1)
{
kase = 1;
}
else
{
kase = 2;
k = ks;
}
}
k++;
// Perform the task indicated by kase.
switch (kase)
{
// Deflate negligible s(p).
case 1:
{
double f = e[p - 2];
e[p - 2] = 0.0;
for (int j = p - 2; j >= k; j--)
{
double t = MathTools.hypot(s[j], f);
double cs = s[j] / t;
double sn = f / t;
s[j] = t;
if (j != k)
{
f = -sn * e[j - 1];
e[j - 1] = cs * e[j - 1];
}
if (wantv)
{
for (int i = 0; i < n; i++)
{
t = cs * V[i][j] + sn * V[i][p - 1];
V[i][p - 1] = -sn * V[i][j] + cs * V[i][p - 1];
V[i][j] = t;
}
}
}
}
break;
// Split at negligible s(k).
case 2:
{
double f = e[k - 1];
e[k - 1] = 0.0;
for (int j = k; j < p; j++)
{
double t = MathTools.hypot(s[j], f);
double cs = s[j] / t;
double sn = f / t;
s[j] = t;
f = -sn * e[j];
e[j] = cs * e[j];
if (wantu)
{
for (int i = 0; i < m; i++)
{
t = cs * U[i][j] + sn * U[i][k - 1];
U[i][k - 1] = -sn * U[i][j] + cs * U[i][k - 1];
U[i][j] = t;
}
}
}
}
break;
// Perform one qr step.
case 3:
{
// Calculate the shift.
double scale = Math.Max(Math.Max(Math.Max(Math.Max(
Math.Abs(s[p - 1]), Math.Abs(s[p - 2])), Math.Abs(e[p - 2])),
Math.Abs(s[k])), Math.Abs(e[k]));
double sp = s[p - 1] / scale;
double spm1 = s[p - 2] / scale;
double epm1 = e[p - 2] / scale;
double sk = s[k] / scale;
double ek = e[k] / scale;
double b = ((spm1 + sp) * (spm1 - sp) + epm1 * epm1) / 2.0;
double c = (sp * epm1) * (sp * epm1);
double shift = 0.0;
if ((b != 0.0) | (c != 0.0))
{
shift = Math.Sqrt(b * b + c);
if (b < 0.0)
{
shift = -shift;
}
shift = c / (b + shift);
}
double f = (sk + sp) * (sk - sp) + shift;
double g = sk * ek;
// Chase zeros.
for (int j = k; j < p - 1; j++)
{
double t = MathTools.hypot(f, g);
double cs = f / t;
double sn = g / t;
if (j != k)
{
e[j - 1] = t;
}
f = cs * s[j] + sn * e[j];
e[j] = cs * e[j] - sn * s[j];
g = sn * s[j + 1];
s[j + 1] = cs * s[j + 1];
if (wantv)
{
for (int i = 0; i < n; i++)
{
t = cs * V[i][j] + sn * V[i][j + 1];
V[i][j + 1] = -sn * V[i][j] + cs * V[i][j + 1];
V[i][j] = t;
}
}
t = MathTools.hypot(f, g);
cs = f / t;
sn = g / t;
s[j] = t;
f = cs * e[j] + sn * s[j + 1];
s[j + 1] = -sn * e[j] + cs * s[j + 1];
g = sn * e[j + 1];
e[j + 1] = cs * e[j + 1];
if (wantu && (j < m - 1))
{
for (int i = 0; i < m; i++)
{
t = cs * U[i][j] + sn * U[i][j + 1];
U[i][j + 1] = -sn * U[i][j] + cs * U[i][j + 1];
U[i][j] = t;
}
}
}
e[p - 2] = f;
iter = iter + 1;
}
break;
// Convergence.
case 4:
{
// Make the singular values positive.
if (s[k] <= 0.0)
{
s[k] = (s[k] < 0.0 ? -s[k] : 0.0);
if (wantv)
{
for (int i = 0; i <= pp; i++)
{
V[i][k] = -V[i][k];
}
}
}
// Order the singular values.
while (k < pp)
{
if (s[k] >= s[k + 1])
{
break;
}
double t = s[k];
s[k] = s[k + 1];
s[k + 1] = t;
if (wantv && (k < n - 1))
{
for (int i = 0; i < n; i++)
{
t = V[i][k + 1]; V[i][k + 1] = V[i][k]; V[i][k] = t;
}
}
if (wantu && (k < m - 1))
{
for (int i = 0; i < m; i++)
{
t = U[i][k + 1]; U[i][k + 1] = U[i][k]; U[i][k] = t;
}
}
k++;
}
iter = 0;
p--;
}
break;
}
}
}
// Symmetric tridiagonal QL algorithm.
private void tql2()
{
// This is derived from the Algol procedures tql2, by
// Bowdler, Martin, Reinsch, and Wilkinson, Handbook for
// Auto. Comp., Vol.ii-Linear Algebra, and the corresponding
// Fortran subroutine in EISPACK.
for (int i = 1; i < n; i++)
{
e[i - 1] = e[i];
}
e[n - 1] = 0.0;
double f = 0.0;
double tst1 = 0.0;
double eps = Math.Pow(2.0, -52.0);
for (int l = 0; l < n; l++)
{
// Find small subdiagonal element
tst1 = Math.Max(tst1, Math.Abs(d[l]) + Math.Abs(e[l]));
int m = l;
while (m < n)
{
if (Math.Abs(e[m]) <= eps * tst1)
{
break;
}
m++;
}
// If m == l, d[l] is an eigenvalue,
// otherwise, iterate.
if (m > l)
{
int iter = 0;
do
{
iter = iter + 1; // (Could check iteration count here.)
// Compute implicit shift
double g = d[l];
double p = (d[l + 1] - g) / (2.0 * e[l]);
double r = MathTools.hypot(p, 1.0);
if (p < 0)
{
r = -r;
}
d[l] = e[l] / (p + r);
d[l + 1] = e[l] * (p + r);
double dl1 = d[l + 1];
double h = g - d[l];
for (int i = l + 2; i < n; i++)
{
d[i] -= h;
}
f = f + h;
// Implicit QL transformation.
p = d[m];
double c = 1.0;
double c2 = c;
double c3 = c;
double el1 = e[l + 1];
double s = 0.0;
double s2 = 0.0;
for (int i = m - 1; i >= l; i--)
{
c3 = c2;
c2 = c;
s2 = s;
g = c * e[i];
h = c * p;
r = MathTools.hypot(p, e[i]);
e[i + 1] = s * r;
s = e[i] / r;
c = p / r;
p = c * d[i] - s * g;
d[i + 1] = h + s * (c * g + s * d[i]);
// Accumulate transformation.
for (int k = 0; k < n; k++)
{
h = V[k][i + 1];
V[k][i + 1] = s * V[k][i] + c * h;
V[k][i] = c * V[k][i] - s * h;
}
}
p = -s * s2 * c3 * el1 * e[l] / dl1;
e[l] = s * p;
d[l] = c * p;
// Check for convergence.
} while (Math.Abs(e[l]) > eps * tst1);
}
d[l] = d[l] + f;
e[l] = 0.0;
}
// Sort eigenvalues and corresponding vectors.
for (int i = 0; i < n - 1; i++)
{
int k = i;
double p = d[i];
for (int j = i + 1; j < n; j++)
{
if (d[j] < p)
{
k = j;
p = d[j];
}
}
if (k != i)
{
d[k] = d[i];
d[i] = p;
for (int j = 0; j < n; j++)
{
p = V[j][i];
V[j][i] = V[j][k];
V[j][k] = p;
}
}
}
}