/// <summary>
/// Run the analysis in a piecewise fashion, so progress can be reported and
/// analysis stopped if necessary. Returns the percentage of analysis done.
/// </summary>
public int RunAnalysisInteractive()
{
int percentDone = -1;
bool b = _currResults.CalculateStatisticsInteractive(_statConn);
// if return value was false, then the statistics are done for this assay result,
// and we should try to move to the next
if (!b)
{
if (_enum.MoveNext())
{
_currResults = ((AssayResults)_enum.Value).FilteredResults;
// associate the stats collection with the results
_currResults.StatCollection = _stats.Copy();
// associate the results with the substructure library
_subsLib.FilteredLibrary.AddResults(_currResults);
// prep the statistics run
_currResults.PrepInteractiveStatisticsRun(_statConn);
b = _currResults.CalculateStatisticsInteractive(_statConn);
}
}
// if we have a true return value from CalculateStatisticsInteractive, then we can increment the count
if (b)
{
_analysisCount++;
percentDone = Convert.ToInt32((double)_analysisCount / (double)_analysisSize * 100);
}
return(percentDone);
}
/// <summary>
/// Calculate the statistics for this set of assay results, comparing it to the master list if relevant
/// If this method is called on a master result list, it will call CalculateStatistics on all of its
/// child sub-results.
/// </summary>
/// <param name="stat">The StatConnector used to calculate statistics</param>
public void CalculateStatistics(STATCONNECTORSRVLib.StatConnector stat)
{
_stats.Calculate(stat, _results, _isMasterResults);
if (_isMasterResults)
{
// now go through the list of subresults and call CalculateStatistics on the subresults
foreach (AssayResults ar in _subResultList)
{
ar.StatCollection = _stats.Copy();
ar.CalculateStatistics(stat);
}
}
}
public void Run()
{
// fire up R
STATCONNECTORSRVLib.StatConnector statConn = new StatConnector();
statConn.Init("R");
// read the custom functions from the dir
RFunctions rfunc = new RFunctions(_customFunctionsDir, statConn);
rfunc.Reload();
// for each set of assay results, associate the results with the substructure libraries
foreach (AssayResults aResults in _hsAssayResults.Values)
{
// associate the stats collection with the results
aResults.StatCollection = _stats.Copy();
// associate the results with the substructure library
_substructureLibrary.AddResults(aResults);
// now, calculate the statistics for this result set (which will also calculate statistics for
// all results sets that were added to the substructure library entries).
aResults.CalculateStatistics(statConn);
}
// close the connection
statConn.Close();
}
