public static ITraqQuantificationResult FindOrCreateITraqQuantificationResult <T>(this T t) where T : IAnnotation
{
if (t.Annotations.ContainsKey(ITraqConsts.ITRAQ_KEY))
{
return(t.Annotations[ITraqConsts.ITRAQ_KEY] as ITraqQuantificationResult);
}
else
{
var result = new ITraqQuantificationResult();
t.Annotations[ITraqConsts.ITRAQ_KEY] = result;
return(result);
}
}
public void TestReadWrite()
{
var ann = new IdentifiedProtein();
var pqr = new ITraqQuantificationResult();
pqr.DatasetMap["D1"] = new ITraqQuantificationDatasetItem()
{
DatasetName = "D1"
};
pqr.DatasetMap["D1"].RatioMap["R114/REF"] = new ITraqQuantificationChannelItem()
{
ChannelName = "R114/REF",
Ratio = 1.5
};
pqr.DatasetMap["D1"].RatioMap["R115/REF"] = new ITraqQuantificationChannelItem()
{
ChannelName = "R115/REF",
Ratio = 1.8
};
pqr.DatasetMap["D2"] = new ITraqQuantificationDatasetItem()
{
DatasetName = "D2"
};
pqr.DatasetMap["D2"].RatioMap["R116/REF"] = new ITraqQuantificationChannelItem()
{
ChannelName = "R116/REF",
Ratio = 2.5
};
pqr.DatasetMap["D2"].RatioMap["R117/REF"] = new ITraqQuantificationChannelItem()
{
ChannelName = "R117/REF",
Ratio = 3.8
};
ann.Annotations[ITraqConsts.ITRAQ_KEY] = pqr;
var converter = new ITraqQuantificationResultConverter <IAnnotation>();
List <IPropertyConverter <IAnnotation> > converters = new List <IPropertyConverter <IAnnotation> >();
converters.Add(converter);
converters.AddRange(converter.GetRelativeConverter(new IAnnotation[] { ann }.ToList()));
CompositePropertyConverter <IAnnotation> finalConverter = new CompositePropertyConverter <IAnnotation>(converters, ',');
if (exportToConsole)
{
Console.WriteLine(finalConverter.Name);
}
Assert.AreEqual("ITRAQ_COUNT,IR_D1_R114/REF,IR_D1_R115/REF,IR_D2_R116/REF,IR_D2_R117/REF", finalConverter.Name);
var line1 = finalConverter.GetProperty(ann);
if (exportToConsole)
{
Console.WriteLine(line1);
}
Assert.AreEqual("2,1.5000,1.8000,2.5000,3.8000", line1);
var protein2 = new IdentifiedProtein();
var finalC = IdentifiedProteinPropertyConverterFactory.GetInstance().GetConverters(finalConverter.Name, ',');
finalC.SetProperty(protein2, line1);
var line2 = finalConverter.GetProperty(protein2);
Assert.AreEqual(line1, line2);
}
