/// <summary>
/// Stores new input data to be processed.
/// </summary>
/// <param name="inputVector">An external input vector.</param>
public void StoreNewData(double[] inputVector)
{
//Reset input data
ResetInputProcessingQueue();
//Store new data
if (_encoderCfg.FeedingCfg.FeedingType == InputFeedingType.Continuous)
{
//Add single vector into the processing queue
_inputDataQueue.Add(AddInternalInputs(inputVector));
}
else
{
//Split steady and varying data
SplitSteadyAndVaryingInputData(inputVector, out _steadyData, out double[] varyingVector);
//Check length of the external varying data vector
ValidateExtInputVectorLength(varyingVector.Length);
//Reset input neurons to initial state
ResetInputNeurons(false);
//Prepare input pattern
FeedingPatternedSettings feedingCfg = (FeedingPatternedSettings)_encoderCfg.FeedingCfg;
InputPattern inputPattern = new InputPattern(varyingVector,
_encoderCfg.VaryingFieldsCfg.ExternalFieldsCfg.FieldCfgCollection.Count,
feedingCfg.VarSchema,
feedingCfg.UnificationCfg.Detrend,
feedingCfg.UnificationCfg.UnifyAmplitude,
feedingCfg.UnificationCfg.ResamplingCfg.SignalBeginThreshold,
feedingCfg.UnificationCfg.ResamplingCfg.SignalEndThreshold,
feedingCfg.UnificationCfg.ResamplingCfg.UniformTimeScale,
NumOfTimePoints == VariableNumOfTimePoints ? ResamplingSettings.AutoTargetTimePointsNum : NumOfTimePoints
);
_inputDataQueue.AddRange(CompleteInputPattern(inputPattern));
}
return;
}
/// <summary>
/// Initializes the input encoder and its feature filters from the specified samples data bundle.
/// </summary>
/// <param name="inputBundle">Sample input data</param>
public void Initialize(VectorBundle inputBundle)
{
//Full reset
Reset();
if (_encoderCfg.FeedingCfg.FeedingType == InputFeedingType.Continuous)
{
//Continuous feeding
//Fixed lengths
_varyingDataVectorLength = inputBundle.InputVectorCollection[0].Length;
NumOfTimePoints = 1;
//Add internal inputs and initialize feature filters
UpdateFeatureFilters(AddInternalInputs(inputBundle.InputVectorCollection));
}
else
{
//Patterned feeding
FeedingPatternedSettings feedingPatternedCfg = (FeedingPatternedSettings)_encoderCfg.FeedingCfg;
//Input pattern length constraint and number of time-points
NumOfTimePoints = feedingPatternedCfg.UnificationCfg.ResamplingCfg.TargetTimePoints != ResamplingSettings.AutoTargetTimePointsNum ? feedingPatternedCfg.UnificationCfg.ResamplingCfg.TargetTimePoints : VariableNumOfTimePoints;
if (NumOfTimePoints == VariableNumOfTimePoints && (_routedVaryingFieldCollection.Count > 0 || feedingPatternedCfg.Slices > 1))
{
//because no resampling, length of external input vector must be fixed to keep consistent data
_varyingDataVectorLength = inputBundle.InputVectorCollection[0].Length - _numOfSteadyFields;
//Number of time-points must be also fixed
NumOfTimePoints = _varyingDataVectorLength / _varyingFields.Count;
}
//Convert input vectors to InputPatterns
foreach (double[] orgVector in inputBundle.InputVectorCollection)
{
//Split steady and varying data
SplitSteadyAndVaryingInputData(orgVector, out double[] steadyVector, out double[] varyingVector);
//Check length of the external varying data vector
ValidateExtInputVectorLength(varyingVector.Length);
//Convert external vector to pattern
FeedingPatternedSettings feedingCfg = (FeedingPatternedSettings)_encoderCfg.FeedingCfg;
InputPattern inputPattern = new InputPattern(varyingVector,
_encoderCfg.VaryingFieldsCfg.ExternalFieldsCfg.FieldCfgCollection.Count,
feedingCfg.VarSchema,
feedingCfg.UnificationCfg.Detrend,
feedingCfg.UnificationCfg.UnifyAmplitude,
feedingCfg.UnificationCfg.ResamplingCfg.SignalBeginThreshold,
feedingCfg.UnificationCfg.ResamplingCfg.SignalEndThreshold,
feedingCfg.UnificationCfg.ResamplingCfg.UniformTimeScale,
NumOfTimePoints == VariableNumOfTimePoints ? ResamplingSettings.AutoTargetTimePointsNum : NumOfTimePoints
);
List <double[]> inputPatternVectors = CompleteInputPattern(inputPattern);
UpdateFeatureFilters(inputPatternVectors);
}
}
//Number of routed input values
NumOfRoutedValues = _routedSteadyFieldIndexCollection.Count;
if (_routedVaryingFieldCollection.Count > 0)
{
NumOfRoutedValues += _routedVaryingFieldCollection.Count * NumOfTimePoints;
}
return;
}
/// <summary>
/// Returns collection of input field names to be routed to readout layer as the predictors
/// </summary>
public List <string> GetRoutedFieldNames()
{
List <string> names = new List <string>();
//Steady fields
if (FeedingCfg.FeedingType == InputEncoder.InputFeedingType.Patterned)
{
FeedingPatternedSettings patternedCfg = (FeedingPatternedSettings)FeedingCfg;
if (patternedCfg.SteadyFieldsCfg != null)
{
//There are steady fields defined
foreach (SteadyFieldSettings sf in patternedCfg.SteadyFieldsCfg.FieldCfgCollection)
{
if (sf.RouteToReadout)
{
names.Add(sf.Name);
}
}
}
}
//Varying fields
if (VaryingFieldsCfg.RouteToReadout)
{
foreach (ExternalFieldSettings fieldCfg in VaryingFieldsCfg.ExternalFieldsCfg.FieldCfgCollection)
{
if (fieldCfg.RouteToReadout)
{
names.Add(fieldCfg.Name);
}
}
if (VaryingFieldsCfg.TransformedFieldsCfg != null)
{
foreach (TransformedFieldSettings fieldCfg in VaryingFieldsCfg.TransformedFieldsCfg.FieldCfgCollection)
{
if (fieldCfg.RouteToReadout)
{
names.Add(fieldCfg.Name);
}
}
}
if (VaryingFieldsCfg.GeneratedFieldsCfg != null)
{
foreach (GeneratedFieldSettings fieldCfg in VaryingFieldsCfg.GeneratedFieldsCfg.FieldCfgCollection)
{
if (fieldCfg.RouteToReadout)
{
names.Add(fieldCfg.Name);
}
}
}
}
return(names);
}
//Methods
/// <summary>
/// Checks consistency
/// </summary>
protected override void Check()
{
//Uniqueness of all input field names
if (FeedingCfg.FeedingType == InputEncoder.InputFeedingType.Patterned)
{
FeedingPatternedSettings patternedCfg = (FeedingPatternedSettings)FeedingCfg;
if (patternedCfg.SteadyFieldsCfg != null)
{
//There are steady fields defined
foreach (SteadyFieldSettings sf in patternedCfg.SteadyFieldsCfg.FieldCfgCollection)
{
if (VaryingFieldsCfg.GetFieldID(sf.Name, false) != -1)
{
throw new InvalidOperationException($"Steady field name {sf.Name} found among varying fields.");
}
}
}
}
return;
}
//Constructor
/// <summary>
/// Creates an initialized instance.
/// </summary>
/// <param name="inputEncoderCfg">The configuration of the input encoder.</param>
public InputEncoder(InputEncoderSettings inputEncoderCfg)
{
_encoderCfg = (InputEncoderSettings)inputEncoderCfg.DeepClone();
//Steady fields
_numOfSteadyFields = 0;
_routedSteadyFieldIndexCollection = new List <int>();
if (_encoderCfg.FeedingCfg.FeedingType == InputFeedingType.Patterned)
{
FeedingPatternedSettings fps = (FeedingPatternedSettings)_encoderCfg.FeedingCfg;
if (fps.SteadyFieldsCfg != null)
{
_numOfSteadyFields = fps.SteadyFieldsCfg.FieldCfgCollection.Count;
for (int i = 0; i < fps.SteadyFieldsCfg.FieldCfgCollection.Count; i++)
{
if (fps.SteadyFieldsCfg.FieldCfgCollection[i].RouteToReadout)
{
_routedSteadyFieldIndexCollection.Add(i);
}
}
}
}
//Varying fields
_varyingFields = new List <InputField>(_encoderCfg.VaryingFieldsCfg.TotalNumOfFields);
int[] coordinates = _encoderCfg.CoordinatesCfg.GetCoordinates();
int fieldIdx = _numOfSteadyFields;
int inputNeuronStartIdx = 0;
//External fields
foreach (ExternalFieldSettings fieldCfg in _encoderCfg.VaryingFieldsCfg.ExternalFieldsCfg.FieldCfgCollection)
{
_varyingFields.Add(new InputField(fieldCfg.Name,
fieldIdx++,
coordinates,
Interval.IntN1P1,
fieldCfg.FeatureFilterCfg,
_encoderCfg.VaryingFieldsCfg.InputSpikesCoderCfg,
(fieldCfg.RouteToReadout && _encoderCfg.VaryingFieldsCfg.RouteToReadout),
inputNeuronStartIdx
));
inputNeuronStartIdx += _varyingFields[(fieldIdx - _numOfSteadyFields) - 1].NumOfInputNeurons;
}
//Internal input transformers and fields
_internalInputTransformerCollection = new List <ITransformer>();
if (_encoderCfg.VaryingFieldsCfg.TransformedFieldsCfg != null)
{
List <string> names = _encoderCfg.VaryingFieldsCfg.GetNames();
foreach (TransformedFieldSettings fieldCfg in _encoderCfg.VaryingFieldsCfg.TransformedFieldsCfg.FieldCfgCollection)
{
_internalInputTransformerCollection.Add(TransformerFactory.Create(names, fieldCfg.TransformerCfg));
_varyingFields.Add(new InputField(fieldCfg.Name,
fieldIdx++,
coordinates,
Interval.IntN1P1,
fieldCfg.FeatureFilterCfg,
_encoderCfg.VaryingFieldsCfg.InputSpikesCoderCfg,
(fieldCfg.RouteToReadout && _encoderCfg.VaryingFieldsCfg.RouteToReadout),
inputNeuronStartIdx
));
inputNeuronStartIdx += _varyingFields[(fieldIdx - _numOfSteadyFields) - 1].NumOfInputNeurons;
}
}
//Internal input generators and fields
_internalInputGeneratorCollection = new List <IGenerator>();
if (_encoderCfg.VaryingFieldsCfg.GeneratedFieldsCfg != null)
{
foreach (GeneratedFieldSettings fieldCfg in _encoderCfg.VaryingFieldsCfg.GeneratedFieldsCfg.FieldCfgCollection)
{
_internalInputGeneratorCollection.Add(GeneratorFactory.Create(fieldCfg.GeneratorCfg));
_varyingFields.Add(new InputField(fieldCfg.Name,
fieldIdx++,
coordinates,
Interval.IntN1P1,
fieldCfg.FeatureFilterCfg,
_encoderCfg.VaryingFieldsCfg.InputSpikesCoderCfg,
(fieldCfg.RouteToReadout && _encoderCfg.VaryingFieldsCfg.RouteToReadout),
inputNeuronStartIdx
));
inputNeuronStartIdx += _varyingFields[(fieldIdx - _numOfSteadyFields) - 1].NumOfInputNeurons;
}
}
_routedVaryingFieldCollection = new List <InputField>(_varyingFields.Count);
foreach (InputField field in _varyingFields)
{
if (field.RouteToReadout)
{
_routedVaryingFieldCollection.Add(field);
}
}
_varyingDataVectorLength = NonFixedVaryingDataVectorLength;
NumOfTimePoints = VariableNumOfTimePoints;
NumOfRoutedValues = 0;
//Input processing queue
_inputDataQueue = new List <double[]>();
ResetInputProcessingQueue();
return;
}
/// <summary>
/// The deep copy constructor.
/// </summary>
/// <param name="source">The source instance.</param>
public FeedingPatternedSettings(FeedingPatternedSettings source)
: this(source.Slices, source.Bidir, source.VarSchema, source.UnificationCfg, source.SteadyFieldsCfg)
{
return;
}
