public static binStack[] genIndex(DataView _quiXMLv,
string rawPath,
int scansbyframe,
BinStackOptions options)
{
int numMatches = _quiXMLv.Count;
int numFrames = countFrames(_quiXMLv, scansbyframe);
int numRawFiles;
//LookupCollection RawFilesColl = countRawFiles(fileXml, out numRawFiles);
LookupCollection RawFilesColl = countRawFiles(_quiXMLv, out numRawFiles);
//create index
binStack[] stackIndex = new binStack[numRawFiles];
//fill rawfilenames in the index
ArrayList rawFilesKeys = (ArrayList)RawFilesColl.Keys;
ArrayList rawFilesValues = (ArrayList)RawFilesColl.Values;
for (int i = 0; i < numRawFiles; i++)
{
stackIndex[i] = new binStack((int)rawFilesValues[i]);
stackIndex[i].rawFileName = rawFilesKeys[i].ToString();
}
fillScans(stackIndex, _quiXMLv, options);
//share out the spectra amongst the frames
int currFrame = 1;
int currScanofFrame = 1;
for (int i = 0; i < numRawFiles; i++)
{
for (int j = 0; j <= stackIndex[i].scan.GetUpperBound(0); j++)
{
stackIndex[i].scan[j].frame = currFrame;
currScanofFrame++;
if (currScanofFrame > scansbyframe)
{
currFrame++;
currScanofFrame = 1;
}
}
}
//WARNING: very dangerous change, but necessary to maintain old binstacks: in currFrame
// we swap the values of scanNumber by spectrumIndex (once we have obtained the desired
// spectrum, we use the unique index (spectrumIndex).
return(stackIndex);
}
public static binStack[] genIndex(string fileXml, string schemaFile, string rawPath, int scansbyframe, BinStackOptions options)
{
int numMatches = countMatches(fileXml);
int numFrames = countFrames(fileXml, scansbyframe);
int numRawFiles;
LookupCollection RawFilesColl = countRawFiles(fileXml, out numRawFiles);
//create index
binStack[] stackIndex = new binStack[numRawFiles];
//fill rawfilenames in the index
ArrayList rawFilesKeys = (ArrayList)RawFilesColl.Keys;
ArrayList rawFilesValues = (ArrayList)RawFilesColl.Values;
for (int i = 0; i < numRawFiles; i++)
{
stackIndex[i] = new binStack((int)rawFilesValues[i]);
stackIndex[i].rawFileName = rawFilesKeys[i].ToString();
}
fillScans(stackIndex, fileXml, schemaFile, options);
//share out the spectra amongst the frames
int currFrame = 1;
int currScanofFrame = 1;
for (int i = 0; i < numRawFiles; i++)
{
for (int j = 0; j <= stackIndex[i].scan.GetUpperBound(0); j++)
{
stackIndex[i].scan[j].frame = currFrame;
currScanofFrame++;
if (currScanofFrame > scansbyframe)
{
currFrame++;
currScanofFrame = 1;
}
}
}
return(stackIndex);
}
