/// <summary>
/// load settings from a file
/// </summary>
/// <param name="pathFile"></param>
public void Load(string pathFile)
{
if (!File.Exists(pathFile))
{
return;
}
XmlSerializer xmlSerializer = new XmlSerializer(typeof(DirectorySettings));
FileStream xmlFileStream = new FileStream(pathFile, FileMode.Open);
DirectorySettings dirSettings = (DirectorySettings)xmlSerializer.Deserialize(xmlFileStream);
xmlFileStream.Close();
this.xmlPath = dirSettings.xmlPath;
this.coordXmlPath = dirSettings.coordXmlPath;
this.interfaceFilePath = dirSettings.interfaceFilePath;
this.pisaPath = dirSettings.pisaPath;
this.pfamPath = dirSettings.pfamPath;
this.pisaPath = dirSettings.pisaPath;
this.piscesPath = dirSettings.piscesPath;
this.fatcatPath = dirSettings.fatcatPath;
this.siftsPath = dirSettings.siftsPath;
this.seqFastaPath = dirSettings.seqFastaPath;
this.protcidDbPath = dirSettings.protcidDbPath;
this.baInterfaceDbPath = dirSettings.baInterfaceDbPath;
this.alignmentDbPath = dirSettings.alignmentDbPath;
this.pdbfamDbPath = dirSettings.pdbfamDbPath;
this.psiblastPath = dirSettings.psiblastPath;
this.seqFilePath = dirSettings.seqFilePath;
this.hhPath = dirSettings.hhPath;
this.hmmerPath = dirSettings.hmmerPath;
}
/// <summary>
/// save this settings to a file
/// </summary>
/// <param name="pathFile"></param>
public void Save(string dirFile)
{
DirectorySettings dirSettings = this;
XmlSerializer xmlSerializer = new XmlSerializer(typeof(DirectorySettings));
TextWriter pathWriter = new StreamWriter(dirFile);
xmlSerializer.Serialize(pathWriter, dirSettings);
pathWriter.Close();
}
/// <summary>
/// load data file directories
/// </summary>
public static void LoadDirSettings()
{
if (!File.Exists(dirFile))
{
throw new Exception("Directory setting file not exists.");
}
dirSettings = new DirectorySettings();
XmlSerializer xmlSerializer = new XmlSerializer(typeof(DirectorySettings));
FileStream settingStream = new FileStream(dirFile, FileMode.Open);
dirSettings = (DirectorySettings)xmlSerializer.Deserialize(settingStream);
settingStream.Close();
logWriter = new StreamWriter(logFile, true);
}
