public static FeatureClusterParameters <UMCLight> ConvertToOmics(LcmsClusteringOptions options)
{
var parameters = new FeatureClusterParameters <UMCLight>
{
Tolerances = options.InstrumentTolerances,
OnlyClusterSameChargeStates = (options.ShouldSeparateCharge == false),
CentroidRepresentation = options.ClusterCentroidRepresentation
};
parameters.DistanceFunction = DistanceFactory <UMCLight> .CreateDistanceFunction(options.DistanceFunction);
return(parameters);
}
/// <summary>
/// Default Constructor. This sets the parameters and tolerances to their default values.
/// </summary>
public UMCSingleLinkageClusterer()
{
Parameters = new FeatureClusterParameters <T>();
m_massComparer = FeatureLight.MassComparison;
}
/// <summary>
/// Default Constructor. This sets the parameters and tolerances to their default values.
/// </summary>
public UMCAverageLinkageClusterer()
{
ShouldTestClustersWithinTolerance = true;
Parameters = new FeatureClusterParameters <T>();
}
/// <summary>
/// Default Constructor. This sets the parameters and tolerances to their default values.
/// </summary>
public UMCCentroidClusterer()
{
Parameters = new FeatureClusterParameters <T>();
}