/// <summary> Writes a SetOfMolecules to an OutputStream for the reaction.
///
/// </summary>
/// <param name="som"> The SetOfMolecules that is written to an OutputStream
/// </param>
private void writeSetOfMolecules(ISetOfMolecules som)
{
for (int i = 0; i < som.MoleculeCount; i++)
{
IMolecule mol = som.getMolecule(i);
for (int j = 0; j < som.getMultiplier(i); j++)
{
//MemoryStream ms = new MemoryStream();
//StreamWriter sw = new StreamWriter(ms);
writer.Write("$MOL\n");
MDLWriter mdlwriter = null;
try
{
mdlwriter = new MDLWriter(writer);
}
catch (System.Exception ex)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error(ex.Message);
//logger.debug(ex);
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
throw new CDKException("Exception while creating MDLWriter: " + ex.Message, ex);
}
mdlwriter.write(mol);
//writer.Write(sw.ToString());
}
}
}
/// <summary> Writes a SetOfMolecules to an OutputStream for the reaction.
///
/// </summary>
/// <param name="som"> The SetOfMolecules that is written to an OutputStream
/// </param>
private void writeSetOfMolecules(ISetOfMolecules som)
{
for (int i = 0; i < som.MoleculeCount; i++)
{
IMolecule mol = som.getMolecule(i);
for (int j = 0; j < som.getMultiplier(i); j++)
{
//MemoryStream ms = new MemoryStream();
//StreamWriter sw = new StreamWriter(ms);
writer.Write("$MOL\n");
MDLWriter mdlwriter = null;
try
{
mdlwriter = new MDLWriter(writer);
}
catch (System.Exception ex)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error(ex.Message);
//logger.debug(ex);
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
throw new CDKException("Exception while creating MDLWriter: " + ex.Message, ex);
}
mdlwriter.write(mol);
//writer.Write(sw.ToString());
}
}
}
