public async Task CommitAsync()
{
try
{
// commit transaction if there is one active
if (_transaction != null && _transaction.IsActive)
{
_session.Flush();
_session.Clear();
}
if (_transaction != null)
{
await _transaction.CommitAsync();
}
}
catch
{
// rollback if there was an exception
if (_transaction != null && _transaction.IsActive)
{
await _transaction.RollbackAsync();
}
throw;
}
finally
{
CloseSession();
}
}
public void ApplyQonverterSettings(IDictionary<Analysis, QonverterSettings> qonverterSettings)
{
clearData();
setControlsWhenDatabaseLocked(true);
var workerThread = new BackgroundWorker()
{
WorkerReportsProgress = true,
WorkerSupportsCancellation = true
};
workerThread.DoWork += (s, e) =>
{
var qonverter = new Qonverter();
qonverter.QonversionProgress += progressMonitor.UpdateProgress;
foreach (var item in qonverterSettings)
qonverter.SettingsByAnalysis[(int) item.Key.Id] = item.Value.ToQonverterSettings();
//qonverter.LogQonversionDetails = true;
qonverter.Reset(Text);
qonverter.Qonvert(Text);
};
workerThread.RunWorkerCompleted += (s, e) =>
{
if (e.Result is Exception)
{
Program.HandleException(e.Result as Exception);
setControlsWhenDatabaseLocked(false);
return;
}
lock (session)
{
var sessionFactory = DataModel.SessionFactoryFactory.CreateSessionFactory(Text, new SessionFactoryConfig { WriteSqlToConsoleOut = true });
session = sessionFactory.OpenSession();
//session.CreateSQLQuery("PRAGMA temp_store=MEMORY").ExecuteUpdate();
_layoutManager.SetSession(session);
// delete old filters since they are not valid with different qonverter settings
session.CreateSQLQuery("DELETE FROM FilterHistory").ExecuteUpdate();
session.Clear();
if (basicFilter == null)
basicFilter = new DataFilter()
{
MaximumQValue = 0.02,
MinimumDistinctPeptides = 2,
MinimumSpectra = 2,
MinimumAdditionalPeptides = 1,
GeneLevelFiltering = false,
DistinctMatchFormat = new DistinctMatchFormat
{
IsChargeDistinct = true,
IsAnalysisDistinct = false,
AreModificationsDistinct = true,
ModificationMassRoundToNearest = 1.0m
}
};
basicFilterControl.DataFilter = basicFilter;
viewFilter = basicFilter;
session.Close();
sessionFactory.Close();
}
progressMonitor = new ProgressMonitor();
progressMonitor.ProgressUpdate += progressMonitor_ProgressUpdate;
basicFilterControl = new BasicFilterControl();
basicFilterControl.BasicFilterChanged += basicFilterControl_BasicFilterChanged;
basicFilterControl.ShowQonverterSettings += ShowQonverterSettings;
dataFilterPopup = new Popup(basicFilterControl) { FocusOnOpen = true };
dataFilterPopup.Closed += dataFilterPopup_Closed;
new Thread(() => OpenFiles(new List<string> { Text }, null)).Start();
};
workerThread.RunWorkerAsync();
}