/// <summary>
/// Add a new node to the list of those to execute.
/// </summary>
/// <param name="node"></param>
public void AddNode(AnalysisGraphNode node)
{
if (m_nodes.Count < 1)
m_nodes.Add(node);
else
{
m_nodes[m_nodes.Count - 1].Next = node;
m_nodes.Add(node);
}
}
public AnalysisGraphNodeViewModel(AnalysisGraphNode node)
{
if (node == null)
throw new ArgumentNullException("node");
// This safely updates the UI thread in case the current analysis is running on a separate thread.
Action update = () => OnPropertyChanged("IsCurrent");
m_node = node;
m_node.StatusChanged += (sender, args) => ThreadSafeDispatcher.Invoke(update);
}
/// <summary>
/// Add a new node to the list of those to execute.
/// </summary>
/// <param name="node"></param>
public void AddNode(AnalysisGraphNode node)
{
if (m_nodes.Count < 1)
{
m_nodes.Add(node);
}
else
{
m_nodes[m_nodes.Count - 1].Next = node;
m_nodes.Add(node);
}
}
private AnalysisGraphNode CreateNode(AnalysisStep step, string name, string description)
{
var node = new AnalysisGraphNode
{
Name = name,
Description = description,
CurrentStep = step,
Method = m_methodMap[step]
};
return(node);
}
private AnalysisGraphNode CreateNode(AnalysisStep step, string name, string description)
{
var node = new AnalysisGraphNode
{
Name = name,
Description = description,
CurrentStep = step,
Method = m_methodMap[step]
};
return node;
}
public void BuildAnalysisGraph(AnalysisConfig config)
{
var graph = new AnalysisGraph();
// Create a feature database
if (config.ShouldCreateFeatureDatabaseOnly)
{
graph.AddNode(CreateNode(AnalysisStep.FindFeatures, "Feature Creation",
"Creates or loads features from deisotoped data."));
}
else
{
if (config.ShouldLoadMTDB)
{
var node = new AnalysisGraphNode
{
Name = "Load MTDB",
Description = "Loads an AMT Tag Database for alignment or peptide identification",
CurrentStep = AnalysisStep.LoadMtdb,
Method =
config.InitialStep == AnalysisStep.FindFeatures
? CreateMtdb
: new DelegateAnalysisMethod(LoadMtdb)
};
graph.AddNode(node);
}
switch (config.InitialStep)
{
case AnalysisStep.LoadMtdb:
case AnalysisStep.FindFeatures:
graph.AddNode(CreateNode(AnalysisStep.FindFeatures, "Feature Creation And Alignment",
"Creates or loads features from deisotoped data and aligns them to a baseline."));
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.Alignment:
graph.AddNode(CreateNode(AnalysisStep.Alignment, "Feature Alignment",
"Aligns features to a reference to correct for systematic errors."));
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.Clustering:
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.PeakMatching:
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
}
}
config.AnalysisGraph = graph;
}
public void BuildAnalysisGraph(AnalysisConfig config)
{
var graph = new AnalysisGraph();
// Create a feature database
if (config.ShouldCreateFeatureDatabaseOnly)
{
graph.AddNode(CreateNode(AnalysisStep.FindFeatures, "Feature Creation",
"Creates or loads features from deisotoped data."));
}
else
{
if (config.ShouldLoadMTDB)
{
var node = new AnalysisGraphNode
{
Name = "Load MTDB",
Description = "Loads an AMT Tag Database for alignment or peptide identification",
CurrentStep = AnalysisStep.LoadMtdb,
Method =
config.InitialStep == AnalysisStep.FindFeatures
? CreateMtdb
: new DelegateAnalysisMethod(LoadMtdb)
};
graph.AddNode(node);
}
switch (config.InitialStep)
{
case AnalysisStep.LoadMtdb:
case AnalysisStep.FindFeatures:
graph.AddNode(CreateNode(AnalysisStep.FindFeatures, "Feature Creation And Alignment",
"Creates or loads features from deisotoped data and aligns them to a baseline."));
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.Alignment:
graph.AddNode(CreateNode(AnalysisStep.Alignment, "Feature Alignment",
"Aligns features to a reference to correct for systematic errors."));
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.Clustering:
graph.AddNode(CreateNode(AnalysisStep.Clustering, "Cluster Features",
"Clusters features across datasets."));
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
case AnalysisStep.PeakMatching:
graph.AddNode(CreateNode(AnalysisStep.PeakMatching, "Feature Identification",
"Matches features to an AMT Tag database."));
break;
}
}
config.AnalysisGraph = graph;
}