public void testWithCellDefWithSpaces()
{
MuCell.Model.SBML.Model model = new MuCell.Model.SBML.Model();
MuCell.Model.Experiment experiment = new MuCell.Model.Experiment("experimen1");
MuCell.Model.Simulation simulation = new MuCell.Model.Simulation("simulation1");
setupExperiment(model, experiment, simulation);
experiment.GetCellDefinition("celldef1").Name = "cell def1";
Assert.That(experiment.ContainsCellDefinition("cell_def1"));
// Test parsing cell def references, group references etc.
MuCell.Model.SBML.Reader.SBMLReader reader = new MuCell.Model.SBML.Reader.SBMLReader();
FormulaParser fp = new FormulaParser(reader, "cell_def1", model, experiment, simulation);
MathTree formulaTree = fp.getFormulaTree();
MuCell.Model.SBML.AggregateReferenceNode root = (MuCell.Model.SBML.AggregateReferenceNode)formulaTree.root;
Assert.AreEqual("cell def1", root.ToString());
Assert.AreEqual(experiment.getCellDefinitions()[0], root.CellDefinition);
Assert.AreEqual(null, root.Group);
Assert.AreEqual(null, root.Species);
}
public void testWithCellDefAndGroupAndSpecies()
{
MuCell.Model.SBML.Model model = new MuCell.Model.SBML.Model();
MuCell.Model.Experiment experiment = new MuCell.Model.Experiment("experimen1");
MuCell.Model.Simulation simulation = new MuCell.Model.Simulation("simulation1");
setupExperiment(model, experiment, simulation);
// Test parsing cell def references, group references etc.
MuCell.Model.SBML.Reader.SBMLReader reader = new MuCell.Model.SBML.Reader.SBMLReader();
FormulaParser fp = new FormulaParser(reader, "5.2+celldef1.group2.s1", model, experiment, simulation);
MathTree formulaTree = fp.getFormulaTree();
MuCell.Model.SBML.InnerNode root = (InnerNode)formulaTree.root;
Assert.AreEqual(BinaryMathOperators.Plus, root.data);
Assert.AreEqual(5.2, ((MuCell.Model.SBML.NumberLeafNode)(root.subtree.ToArray()[0])).data);
Assert.AreEqual("5.2+celldef1.group2.s1", root.ToString());
MuCell.Model.SBML.AggregateReferenceNode right = (MuCell.Model.SBML.AggregateReferenceNode)(root.subtree.ToArray()[1]);
Assert.AreEqual("celldef1.group2.s1", right.ToString());
Assert.AreEqual(experiment.getCellDefinitions()[0], right.CellDefinition);
Assert.AreEqual("2", right.Group.ID);
Assert.AreEqual("s1", right.Species.ID);
}
