/// <summary>
        /// Main entry point to start analysis; handles setting up rules, directory enumeration
        /// file type detection and handoff
        /// Pre: All Configure Methods have been called already and we are ready to SCAN
        /// </summary>
        /// <returns></returns>
        public int Run()
        {
            WriteOnce.SafeLog("AnalyzeCommand::Run", LogLevel.Trace);

            DateTime start = DateTime.Now;

            WriteOnce.Operation(ErrMsg.FormatString(ErrMsg.ID.CMD_RUNNING, "Analyze"));

            _appProfile.MetaData.TotalFiles = _srcfileList.Count();//updated for zipped files later

            // Iterate through all files and process against rules
            foreach (string filename in _srcfileList)
            {
                var fileExtension = new FileInfo(filename).Extension;
                if (COMPRESSED_EXTENSIONS.Any(fileExtension.Contains))
                {
                    UnZipAndProcess(filename); //determine if file is a compressed item to unpackage for processing
                }
                else
                {
                    ProcessAsFile(filename);
                }
            }

            WriteOnce.General("\r" + ErrMsg.FormatString(ErrMsg.ID.ANALYZE_FILES_PROCESSED_PCNT, 100));
            WriteOnce.Operation(ErrMsg.GetString(ErrMsg.ID.CMD_PREPARING_REPORT));

            //Prepare report results
            _appProfile.MetaData.LastUpdated = LastUpdated.ToString();
            _appProfile.DateScanned          = DateScanned.ToString();
            _appProfile.PrepareReport();
            TimeSpan timeSpan = start - DateTime.Now;

            WriteOnce.SafeLog(String.Format("Processing time: seconds:{0}", timeSpan.TotalSeconds * -1), LogLevel.Trace);
            FlushAll();

            //wrapup result status
            if (_appProfile.MetaData.TotalFiles == _appProfile.MetaData.FilesSkipped)
            {
                WriteOnce.Error(ErrMsg.GetString(ErrMsg.ID.ANALYZE_NOSUPPORTED_FILETYPES));
            }
            else if (_appProfile.MatchList.Count == 0)
            {
                WriteOnce.Error(ErrMsg.GetString(ErrMsg.ID.ANALYZE_NOPATTERNS));
            }
            else
            {
                WriteOnce.Operation(ErrMsg.FormatString(ErrMsg.ID.CMD_COMPLETED, "Analyze"));
            }

            //html report size warning
            if (_arg_fileFormat == "html" && new FileInfo("output.html").Length > MAX_HTML_REPORT_FILE_SIZE)
            {
                WriteOnce.Info(ErrMsg.GetString(ErrMsg.ID.ANALYZE_REPORTSIZE_WARN));
            }

            return(_appProfile.MatchList.Count() == 0 ? (int)ExitCode.NoMatches :
                   (int)ExitCode.MatchesFound);
        }
        /// <summary>
        /// Main entry point to start analysis; handles setting up rules, directory enumeration
        /// file type detection and handoff
        /// Pre: All Configure Methods have been called already and we are ready to SCAN
        /// </summary>
        /// <returns></returns>
        public int Run()
        {
            WriteOnce.SafeLog("AnalyzeCommand::Run", LogLevel.Trace);

            DateTime start = DateTime.Now;

            WriteOnce.Operation(ErrMsg.FormatString(ErrMsg.ID.CMD_RUNNING, "Analyze"));

            _appProfile.MetaData.TotalFiles = _srcfileList.Count();//updated for zipped files later

            // Iterate through all files and process against rules
            foreach (string filename in _srcfileList)
            {
                ArchiveFileType archiveFileType = MiniMagic.DetectFileType(filename);
                if (archiveFileType == ArchiveFileType.UNKNOWN)//not a known zipped file type
                {
                    ProcessAsFile(filename);
                }
                else
                {
                    UnZipAndProcess(filename, archiveFileType);
                }
            }

            WriteOnce.General("\r" + ErrMsg.FormatString(ErrMsg.ID.ANALYZE_FILES_PROCESSED_PCNT, 100));
            WriteOnce.Operation(ErrMsg.GetString(ErrMsg.ID.CMD_PREPARING_REPORT));

            //Prepare report results
            _appProfile.MetaData.LastUpdated = LastUpdated.ToString();
            _appProfile.DateScanned          = DateScanned.ToString();
            _appProfile.PrepareReport();
            TimeSpan timeSpan = start - DateTime.Now;

            WriteOnce.SafeLog(String.Format("Processing time: seconds:{0}", timeSpan.TotalSeconds * -1), LogLevel.Trace);
            FlushAll();

            //wrapup result status
            if (_appProfile.MetaData.TotalFiles == _appProfile.MetaData.FilesSkipped)
            {
                WriteOnce.Error(ErrMsg.GetString(ErrMsg.ID.ANALYZE_NOSUPPORTED_FILETYPES));
            }
            else if (_appProfile.MatchList.Count == 0)
            {
                WriteOnce.Error(ErrMsg.GetString(ErrMsg.ID.ANALYZE_NOPATTERNS));
            }
            else
            {
                WriteOnce.Operation(ErrMsg.FormatString(ErrMsg.ID.CMD_COMPLETED, "Analyze"));
                if (!_arg_autoBrowserOpen)
                {
                    WriteOnce.Any(ErrMsg.FormatString(ErrMsg.ID.ANALYZE_OUTPUT_FILE, "output.html"));
                }
            }

            return(_appProfile.MatchList.Count() == 0 ? (int)ExitCode.NoMatches :
                   (int)ExitCode.MatchesFound);
        }
        /// <summary>
        /// Main entry point to start analysis; handles setting up rules, directory enumeration
        /// file type detection and handoff
        /// Pre: All Configure Methods have been called already and we are ready to SCAN
        /// </summary>
        /// <returns></returns>
        public int Run()
        {
            WriteOnce.SafeLog("AnalyzeCommand::Run", LogLevel.Trace);

            DateTime start = DateTime.Now;

            WriteOnce.Operation(ErrMsg.FormatString(ErrMsg.ID.CMD_RUNNING, "Analyze"));

            _appProfile.MetaData.TotalFiles = _srcfileList.Count();//updated for zipped files later

            // Iterate through all files and process against rules
            foreach (string filename in _srcfileList)
            {
                //exclude sample, test or similar files by default or as specified in exclusion list
                if (!_arg_allowSampleFiles && _fileExclusionList.Any(v => filename.ToLower().Contains(v)))
                {
                    WriteOnce.SafeLog("Part of excluded list: " + filename, LogLevel.Trace);
                    WriteOnce.SafeLog(ErrMsg.FormatString(ErrMsg.ID.ANALYZE_FILESIZE_SKIPPED, filename), LogLevel.Trace);
                    _appProfile.MetaData.FilesSkipped++;
                    continue;
                }

                ArchiveFileType archiveFileType = MiniMagic.DetectFileType(filename);
                if (archiveFileType == ArchiveFileType.UNKNOWN)
                {
                    ProcessAsFile(filename);
                }
                else
                {
                    UnZipAndProcess(filename, archiveFileType);
                }
            }

            WriteOnce.General("\r" + ErrMsg.FormatString(ErrMsg.ID.ANALYZE_FILES_PROCESSED_PCNT, 100));
            WriteOnce.Operation(ErrMsg.GetString(ErrMsg.ID.CMD_PREPARING_REPORT));

            //Prepare report results
            _appProfile.MetaData.LastUpdated = LastUpdated.ToString();
            _appProfile.DateScanned          = DateScanned.ToString();
            _appProfile.PrepareReport();
            TimeSpan timeSpan = start - DateTime.Now;

            WriteOnce.SafeLog(String.Format("Processing time: seconds:{0}", timeSpan.TotalSeconds * -1), LogLevel.Trace);
            FlushAll();

            //wrapup result status
            if (_appProfile.MetaData.TotalFiles == _appProfile.MetaData.FilesSkipped)
            {
                WriteOnce.Error(ErrMsg.GetString(ErrMsg.ID.ANALYZE_NOSUPPORTED_FILETYPES));
            }
            else if (_appProfile.MatchList.Count == 0)
            {
                WriteOnce.Error(ErrMsg.GetString(ErrMsg.ID.ANALYZE_NOPATTERNS));
            }
            else
            {
                WriteOnce.Operation(ErrMsg.FormatString(ErrMsg.ID.CMD_COMPLETED, "Analyze"));
            }

            return(_appProfile.MatchList.Count() == 0 ? (int)ExitCode.NoMatches :
                   (int)ExitCode.MatchesFound);
        }