//---------------------------------------------------------------------
public static void WritePrimaryLogFile(int CurrentTime)
{
double[] avgAnnualPPT = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgJJAtemp = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgNEEc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOMtc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgAGB = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgAGNPPtc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgBGNPPtc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgLittertc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgWoodMortality = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgMineralN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgGrossMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgTotalN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortLeafC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortFRootC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortWoodC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgWoodC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortCRootC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCRootC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortLeafN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortFRootN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortWoodN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortCRootN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgWoodN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCRootN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfStrucC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfMetaC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilStrucC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilMetaC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfStrucN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfMetaN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilStrucN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilMetaN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfStrucNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfMetaNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilStrucNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilMetaNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1surfC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1soilC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM2C = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM3C = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1surfN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1soilN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM2N = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM3N = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1surfNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1soilNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM2NetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM3NetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
//double[] avgNDeposition = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgStreamC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgStreamN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgFireCEfflux = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgFireNEfflux = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgNvol = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgNresorbed = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgTotalSoilN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgNuptake = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgfrassC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avglai = new double[PlugIn.ModelCore.Ecoregions.Count];
foreach (IEcoregion ecoregion in PlugIn.ModelCore.Ecoregions)
{
avgAnnualPPT[ecoregion.Index] = 0.0;
avgJJAtemp[ecoregion.Index] = 0.0;
avgNEEc[ecoregion.Index] = 0.0;
avgSOMtc[ecoregion.Index] = 0.0;
avgAGB[ecoregion.Index] = 0.0;
avgAGNPPtc[ecoregion.Index] = 0.0;
avgBGNPPtc[ecoregion.Index] = 0.0;
avgLittertc[ecoregion.Index] = 0.0;
avgWoodMortality[ecoregion.Index] = 0.0;
avgMineralN[ecoregion.Index] = 0.0;
avgGrossMin[ecoregion.Index] = 0.0;
avgTotalN[ecoregion.Index] = 0.0;
avgCohortLeafC[ecoregion.Index] = 0.0;
avgCohortFRootC[ecoregion.Index] = 0.0;
avgCohortWoodC[ecoregion.Index] = 0.0;
avgCohortCRootC[ecoregion.Index] = 0.0;
avgWoodC[ecoregion.Index] = 0.0;
avgCRootC[ecoregion.Index] = 0.0;
avgSurfStrucC[ecoregion.Index] = 0.0;
avgSurfMetaC[ecoregion.Index] = 0.0;
avgSoilStrucC[ecoregion.Index] = 0.0;
avgSoilMetaC[ecoregion.Index] = 0.0;
avgCohortLeafN[ecoregion.Index] = 0.0;
avgCohortFRootN[ecoregion.Index] = 0.0;
avgCohortWoodN[ecoregion.Index] = 0.0;
avgCohortCRootN[ecoregion.Index] = 0.0;
avgWoodN[ecoregion.Index] = 0.0;
avgCRootN[ecoregion.Index] = 0.0;
avgSurfStrucN[ecoregion.Index] = 0.0;
avgSurfMetaN[ecoregion.Index] = 0.0;
avgSoilStrucN[ecoregion.Index] = 0.0;
avgSoilMetaN[ecoregion.Index] = 0.0;
avgSurfStrucNetMin[ecoregion.Index] = 0.0;
avgSurfMetaNetMin[ecoregion.Index] = 0.0;
avgSoilStrucNetMin[ecoregion.Index] = 0.0;
avgSoilMetaNetMin[ecoregion.Index] = 0.0;
avgSOM1surfC[ecoregion.Index] = 0.0;
avgSOM1soilC[ecoregion.Index] = 0.0;
avgSOM2C[ecoregion.Index] = 0.0;
avgSOM3C[ecoregion.Index] = 0.0;
avgSOM1surfN[ecoregion.Index] = 0.0;
avgSOM1soilN[ecoregion.Index] = 0.0;
avgSOM2N[ecoregion.Index] = 0.0;
avgSOM3N[ecoregion.Index] = 0.0;
avgSOM1surfNetMin[ecoregion.Index] = 0.0;
avgSOM1soilNetMin[ecoregion.Index] = 0.0;
avgSOM2NetMin[ecoregion.Index] = 0.0;
avgSOM3NetMin[ecoregion.Index] = 0.0;
//avgNDeposition[ecoregion.Index] = 0.0;
avgStreamC[ecoregion.Index] = 0.0;
avgStreamN[ecoregion.Index] = 0.0;
avgFireCEfflux[ecoregion.Index] = 0.0;
avgFireNEfflux[ecoregion.Index] = 0.0;
avgNuptake[ecoregion.Index] = 0.0;
avgNresorbed[ecoregion.Index] = 0.0;
avgTotalSoilN[ecoregion.Index] = 0.0;
avgNvol[ecoregion.Index] = 0.0;
avgfrassC[ecoregion.Index] = 0.0;
}
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
IEcoregion ecoregion = PlugIn.ModelCore.Ecoregion[site];
avgNEEc[ecoregion.Index] += SiteVars.AnnualNEE[site];
avgSOMtc[ecoregion.Index] += GetOrganicCarbon(site);
avgAGB[ecoregion.Index] += Main.ComputeLivingBiomass(SiteVars.Cohorts[site]);
avgAGNPPtc[ecoregion.Index] += SiteVars.AGNPPcarbon[site];
avgBGNPPtc[ecoregion.Index] += SiteVars.BGNPPcarbon[site];
avgLittertc[ecoregion.Index] += SiteVars.LitterfallC[site];
avgWoodMortality[ecoregion.Index] += SiteVars.WoodMortality[site] * 0.47;
avgMineralN[ecoregion.Index] += SiteVars.MineralN[site];
avgTotalN[ecoregion.Index] += GetTotalNitrogen(site);
avgGrossMin[ecoregion.Index] += SiteVars.GrossMineralization[site];
avgCohortLeafC[ecoregion.Index] += SiteVars.CohortLeafC[site];
avgCohortFRootC[ecoregion.Index] += SiteVars.CohortFRootC[site];
avgCohortWoodC[ecoregion.Index] += SiteVars.CohortWoodC[site];
avgCohortCRootC[ecoregion.Index] += SiteVars.CohortCRootC[site];
avgWoodC[ecoregion.Index] += SiteVars.SurfaceDeadWood[site].Carbon;
avgCRootC[ecoregion.Index] += SiteVars.SoilDeadWood[site].Carbon;
avgSurfStrucC[ecoregion.Index] += SiteVars.SurfaceStructural[site].Carbon;
avgSurfMetaC[ecoregion.Index] += SiteVars.SurfaceMetabolic[site].Carbon;
avgSoilStrucC[ecoregion.Index] += SiteVars.SoilStructural[site].Carbon;
avgSoilMetaC[ecoregion.Index] += SiteVars.SoilMetabolic[site].Carbon;
avgSOM1surfC[ecoregion.Index] += SiteVars.SOM1surface[site].Carbon;
avgSOM1soilC[ecoregion.Index] += SiteVars.SOM1soil[site].Carbon;
avgSOM2C[ecoregion.Index] += SiteVars.SOM2[site].Carbon;
avgSOM3C[ecoregion.Index] += SiteVars.SOM3[site].Carbon;
avgCohortLeafN[ecoregion.Index] += SiteVars.CohortLeafN[site];
avgCohortFRootN[ecoregion.Index] += SiteVars.CohortFRootN[site];
avgCohortWoodN[ecoregion.Index] += SiteVars.CohortWoodN[site];
avgCohortCRootN[ecoregion.Index] += SiteVars.CohortCRootN[site];
avgWoodN[ecoregion.Index] += SiteVars.SurfaceDeadWood[site].Nitrogen;
avgCRootN[ecoregion.Index] += SiteVars.SoilDeadWood[site].Nitrogen;
avgSurfStrucN[ecoregion.Index] += SiteVars.SurfaceStructural[site].Nitrogen;
avgSurfMetaN[ecoregion.Index] += SiteVars.SurfaceMetabolic[site].Nitrogen;
avgSoilStrucN[ecoregion.Index] += SiteVars.SoilStructural[site].Nitrogen;
avgSoilMetaN[ecoregion.Index] += SiteVars.SoilMetabolic[site].Nitrogen;
avgSOM1surfN[ecoregion.Index] += SiteVars.SOM1surface[site].Nitrogen;
avgSOM1soilN[ecoregion.Index] += SiteVars.SOM1soil[site].Nitrogen;
avgSOM2N[ecoregion.Index] += SiteVars.SOM2[site].Nitrogen;
avgSOM3N[ecoregion.Index] += SiteVars.SOM3[site].Nitrogen;
avgTotalSoilN[ecoregion.Index] += GetTotalSoilNitrogen(site);
avgSurfStrucNetMin[ecoregion.Index] += SiteVars.SurfaceStructural[site].NetMineralization;
avgSurfMetaNetMin[ecoregion.Index] += SiteVars.SurfaceMetabolic[site].NetMineralization;
avgSoilStrucNetMin[ecoregion.Index] += SiteVars.SoilStructural[site].NetMineralization;
avgSoilMetaNetMin[ecoregion.Index] += SiteVars.SoilMetabolic[site].NetMineralization;
avgSOM1surfNetMin[ecoregion.Index] += SiteVars.SOM1surface[site].NetMineralization;
avgSOM1soilNetMin[ecoregion.Index] += SiteVars.SOM1soil[site].NetMineralization;
avgSOM2NetMin[ecoregion.Index] += SiteVars.SOM2[site].NetMineralization;
avgSOM3NetMin[ecoregion.Index] += SiteVars.SOM3[site].NetMineralization;
//avgNDeposition[ecoregion.Index] = EcoregionData.AnnualNDeposition[ecoregion];
avgStreamC[ecoregion.Index] += SiteVars.Stream[site].Carbon;
avgStreamN[ecoregion.Index] += SiteVars.Stream[site].Nitrogen; //+ SiteVars.NLoss[site];
avgFireCEfflux[ecoregion.Index] += SiteVars.FireCEfflux[site];
avgFireNEfflux[ecoregion.Index] += SiteVars.FireNEfflux[site];
avgNresorbed[ecoregion.Index] += SiteVars.ResorbedN[site];
avgNuptake[ecoregion.Index] += GetSoilNuptake(site);
avgNvol[ecoregion.Index] += SiteVars.Nvol[site];
avgfrassC[ecoregion.Index] += SiteVars.FrassC[site];
}
foreach (IEcoregion ecoregion in PlugIn.ModelCore.Ecoregions)
{
if (!ecoregion.Active)
continue;
//if(EcoregionData.ActiveSiteCount[ecoregion] > 0)
//{
primaryLog.Clear();
PrimaryLog pl = new PrimaryLog();
//primary.AddObject(new PrimaryLog()); // { EcoregionName = ecoregion.Name });
//log.Write("{0}, {1}, {2}, ",
pl.Time = CurrentTime;
pl.EcoregionName = ecoregion.Name;
pl.EcoregionIndex = ecoregion.Index;
pl.NumSites = EcoregionData.ActiveSiteCount[ecoregion];
pl.NEEC = (avgNEEc[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOMTC = (avgSOMtc[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.AGB = (avgAGB[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.00}, {1:0.0}, {2:0.0}, {3:0.0}, ",
pl.AG_NPPC = (avgAGNPPtc[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.BG_NPPC = (avgBGNPPtc[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.Litterfall = (avgLittertc[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.AgeMortality = (avgWoodMortality[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0}, {1:0.0}, {2:0.0}, ",
pl.MineralN = (avgMineralN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.TotalN = (avgTotalN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.GrossMineralization = (avgGrossMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.TotalNdep = (EcoregionData.AnnualNDeposition[ecoregion] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0}, {1:0.0}, {2:0.0}, {3:0.0}, ",
pl.C_Leaf = (avgCohortLeafC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_FRoot = (avgCohortFRootC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_Wood = (avgCohortWoodC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_CRoot = (avgCohortCRootC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadWood = (avgWoodC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadCRoot = (avgCRootC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0}, {1:0.0}, {2:0.0}, {3:0.0}, ",
pl.C_DeadLeaf_Struc = (avgSurfStrucC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadLeaf_Meta = (avgSurfMetaC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadFRoot_Struc = (avgSoilStrucC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadFRoot_Meta = (avgSoilMetaC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0}, {1:0.0}, {2:0.0}, {3:0.0}, ",
pl.C_SOM1surf = (avgSOM1surfC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_SOM1soil = (avgSOM1soilC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_SOM2 = (avgSOM2C[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_SOM3 = (avgSOM3C[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.00}, {1:0.00}, {2:0.00}, {3:0.00}, ",
pl.N_Leaf = (avgCohortLeafN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_FRoot = (avgCohortFRootN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_Wood = (avgCohortWoodN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_CRoot = (avgCohortCRootN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadWood = (avgWoodN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadCRoot = (avgCRootN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.00}, {1:0.00}, {2:0.00}, {3:0.00}, ",
pl.N_DeadLeaf_Struc = (avgSurfStrucN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadLeaf_Meta = (avgSurfMetaN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadFRoot_Struc = (avgSoilStrucN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadFRoot_Meta = (avgSoilMetaN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.00}, {1:0.00}, {2:0.00}, {3:0.00}, ",
pl.N_SOM1surf = (avgSOM1surfN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_SOM1soil = (avgSOM1soilN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_SOM2 = (avgSOM2N[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_SOM3 = (avgSOM3N[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0}, {1:0.0}, {2:0.0}, {3:0.0}, ",
pl.SurfStrucNetMin = (avgSurfStrucNetMin[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.SurfMetaNetMin = (avgSurfMetaNetMin[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.SoilStrucNetMin = (avgSoilStrucNetMin[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.SoilMetaNetMin = (avgSoilMetaNetMin[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0}, {1:0.0}, {2:0.0}, {3:0.0}, ",
pl.SOM1surfNetMin = (avgSOM1surfNetMin[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOM1soilNetMin = (avgSOM1soilNetMin[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOM2NetMin = (avgSOM2NetMin[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOM3NetMin = (avgSOM3NetMin[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0000}, {1:0.0000}, {2:0.000}, {3:0.0}, ",
//pl.NitrogenDeposition = (EcoregionData.AnnualNDeposition[ecoregion] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.StreamC = (avgStreamC[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.StreamN = (avgStreamN[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.FireCEfflux = (avgFireCEfflux[ecoregion.Index] / (double) EcoregionData.ActiveSiteCount[ecoregion]);
pl.FireNEfflux = (avgFireNEfflux[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0000}, {1:0.0000}, {2:0.000}, {3:0.0}, ",
pl.Nuptake = (avgNuptake[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.Nresorbed = (avgNresorbed[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.TotalSoilN = (avgTotalSoilN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.Nvol = (avgNvol[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.Write("{0:0.0000}, ",
pl.FrassC = (avgfrassC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
//);
//log.WriteLine("");
primaryLog.AddObject(pl);
primaryLog.WriteToFile();
//}
}
//Reset back to zero:
//These are being reset here because fire effects are handled in the first year of the
//growth loop but the reporting doesn't happen until after all growth is finished.
SiteVars.FireCEfflux.ActiveSiteValues = 0.0;
SiteVars.FireNEfflux.ActiveSiteValues = 0.0;
}
//---------------------------------------------------------------------
public static void WritePrimaryLogFile(int CurrentTime)
{
double[] avgAnnualPPT = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgJJAtemp = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgNEEc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOMtc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgAGB = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgAGNPPtc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgBGNPPtc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgLittertc = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgWoodMortality = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgMineralN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgGrossMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgTotalN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortLeafC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortFRootC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortWoodC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgWoodC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortCRootC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCRootC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortLeafN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortFRootN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortWoodN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCohortCRootN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgWoodN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgCRootN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfStrucC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfMetaC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilStrucC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilMetaC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfStrucN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfMetaN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilStrucN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilMetaN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfStrucNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSurfMetaNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilStrucNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSoilMetaNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1surfC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1soilC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM2C = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM3C = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1surfN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1soilN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM2N = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM3N = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1surfNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM1soilNetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM2NetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgSOM3NetMin = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgStreamC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgStreamN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgFireCEfflux = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgFireNEfflux = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgNvol = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgNresorbed = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgTotalSoilN = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgNuptake = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgfrassC = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avglai = new double[PlugIn.ModelCore.Ecoregions.Count];
foreach (IEcoregion ecoregion in PlugIn.ModelCore.Ecoregions)
{
avgAnnualPPT[ecoregion.Index] = 0.0;
avgJJAtemp[ecoregion.Index] = 0.0;
avgNEEc[ecoregion.Index] = 0.0;
avgSOMtc[ecoregion.Index] = 0.0;
avgAGB[ecoregion.Index] = 0.0;
avgAGNPPtc[ecoregion.Index] = 0.0;
avgBGNPPtc[ecoregion.Index] = 0.0;
avgLittertc[ecoregion.Index] = 0.0;
avgWoodMortality[ecoregion.Index] = 0.0;
avgMineralN[ecoregion.Index] = 0.0;
avgGrossMin[ecoregion.Index] = 0.0;
avgTotalN[ecoregion.Index] = 0.0;
avgCohortLeafC[ecoregion.Index] = 0.0;
avgCohortFRootC[ecoregion.Index] = 0.0;
avgCohortWoodC[ecoregion.Index] = 0.0;
avgCohortCRootC[ecoregion.Index] = 0.0;
avgWoodC[ecoregion.Index] = 0.0;
avgCRootC[ecoregion.Index] = 0.0;
avgSurfStrucC[ecoregion.Index] = 0.0;
avgSurfMetaC[ecoregion.Index] = 0.0;
avgSoilStrucC[ecoregion.Index] = 0.0;
avgSoilMetaC[ecoregion.Index] = 0.0;
avgCohortLeafN[ecoregion.Index] = 0.0;
avgCohortFRootN[ecoregion.Index] = 0.0;
avgCohortWoodN[ecoregion.Index] = 0.0;
avgCohortCRootN[ecoregion.Index] = 0.0;
avgWoodN[ecoregion.Index] = 0.0;
avgCRootN[ecoregion.Index] = 0.0;
avgSurfStrucN[ecoregion.Index] = 0.0;
avgSurfMetaN[ecoregion.Index] = 0.0;
avgSoilStrucN[ecoregion.Index] = 0.0;
avgSoilMetaN[ecoregion.Index] = 0.0;
avgSurfStrucNetMin[ecoregion.Index] = 0.0;
avgSurfMetaNetMin[ecoregion.Index] = 0.0;
avgSoilStrucNetMin[ecoregion.Index] = 0.0;
avgSoilMetaNetMin[ecoregion.Index] = 0.0;
avgSOM1surfC[ecoregion.Index] = 0.0;
avgSOM1soilC[ecoregion.Index] = 0.0;
avgSOM2C[ecoregion.Index] = 0.0;
avgSOM3C[ecoregion.Index] = 0.0;
avgSOM1surfN[ecoregion.Index] = 0.0;
avgSOM1soilN[ecoregion.Index] = 0.0;
avgSOM2N[ecoregion.Index] = 0.0;
avgSOM3N[ecoregion.Index] = 0.0;
avgSOM1surfNetMin[ecoregion.Index] = 0.0;
avgSOM1soilNetMin[ecoregion.Index] = 0.0;
avgSOM2NetMin[ecoregion.Index] = 0.0;
avgSOM3NetMin[ecoregion.Index] = 0.0;
//avgNDeposition[ecoregion.Index] = 0.0;
avgStreamC[ecoregion.Index] = 0.0;
avgStreamN[ecoregion.Index] = 0.0;
avgFireCEfflux[ecoregion.Index] = 0.0;
avgFireNEfflux[ecoregion.Index] = 0.0;
avgNuptake[ecoregion.Index] = 0.0;
avgNresorbed[ecoregion.Index] = 0.0;
avgTotalSoilN[ecoregion.Index] = 0.0;
avgNvol[ecoregion.Index] = 0.0;
avgfrassC[ecoregion.Index] = 0.0;
}
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
IEcoregion ecoregion = PlugIn.ModelCore.Ecoregion[site];
avgNEEc[ecoregion.Index] += SiteVars.AnnualNEE[site];
avgSOMtc[ecoregion.Index] += GetOrganicCarbon(site);
avgAGB[ecoregion.Index] += Main.ComputeLivingBiomass(SiteVars.Cohorts[site]);
avgAGNPPtc[ecoregion.Index] += SiteVars.AGNPPcarbon[site];
avgBGNPPtc[ecoregion.Index] += SiteVars.BGNPPcarbon[site];
avgLittertc[ecoregion.Index] += SiteVars.LitterfallC[site];
avgWoodMortality[ecoregion.Index] += SiteVars.WoodMortality[site] * 0.47;
avgMineralN[ecoregion.Index] += SiteVars.MineralN[site];
avgTotalN[ecoregion.Index] += GetTotalNitrogen(site);
avgGrossMin[ecoregion.Index] += SiteVars.GrossMineralization[site];
avgCohortLeafC[ecoregion.Index] += SiteVars.CohortLeafC[site];
avgCohortFRootC[ecoregion.Index] += SiteVars.CohortFRootC[site];
avgCohortWoodC[ecoregion.Index] += SiteVars.CohortWoodC[site];
avgCohortCRootC[ecoregion.Index] += SiteVars.CohortCRootC[site];
avgWoodC[ecoregion.Index] += SiteVars.SurfaceDeadWood[site].Carbon;
avgCRootC[ecoregion.Index] += SiteVars.SoilDeadWood[site].Carbon;
avgSurfStrucC[ecoregion.Index] += SiteVars.SurfaceStructural[site].Carbon;
avgSurfMetaC[ecoregion.Index] += SiteVars.SurfaceMetabolic[site].Carbon;
avgSoilStrucC[ecoregion.Index] += SiteVars.SoilStructural[site].Carbon;
avgSoilMetaC[ecoregion.Index] += SiteVars.SoilMetabolic[site].Carbon;
avgSOM1surfC[ecoregion.Index] += SiteVars.SOM1surface[site].Carbon;
avgSOM1soilC[ecoregion.Index] += SiteVars.SOM1soil[site].Carbon;
avgSOM2C[ecoregion.Index] += SiteVars.SOM2[site].Carbon;
avgSOM3C[ecoregion.Index] += SiteVars.SOM3[site].Carbon;
avgCohortLeafN[ecoregion.Index] += SiteVars.CohortLeafN[site];
avgCohortFRootN[ecoregion.Index] += SiteVars.CohortFRootN[site];
avgCohortWoodN[ecoregion.Index] += SiteVars.CohortWoodN[site];
avgCohortCRootN[ecoregion.Index] += SiteVars.CohortCRootN[site];
avgWoodN[ecoregion.Index] += SiteVars.SurfaceDeadWood[site].Nitrogen;
avgCRootN[ecoregion.Index] += SiteVars.SoilDeadWood[site].Nitrogen;
avgSurfStrucN[ecoregion.Index] += SiteVars.SurfaceStructural[site].Nitrogen;
avgSurfMetaN[ecoregion.Index] += SiteVars.SurfaceMetabolic[site].Nitrogen;
avgSoilStrucN[ecoregion.Index] += SiteVars.SoilStructural[site].Nitrogen;
avgSoilMetaN[ecoregion.Index] += SiteVars.SoilMetabolic[site].Nitrogen;
avgSOM1surfN[ecoregion.Index] += SiteVars.SOM1surface[site].Nitrogen;
avgSOM1soilN[ecoregion.Index] += SiteVars.SOM1soil[site].Nitrogen;
avgSOM2N[ecoregion.Index] += SiteVars.SOM2[site].Nitrogen;
avgSOM3N[ecoregion.Index] += SiteVars.SOM3[site].Nitrogen;
avgTotalSoilN[ecoregion.Index] += GetTotalSoilNitrogen(site);
avgSurfStrucNetMin[ecoregion.Index] += SiteVars.SurfaceStructural[site].NetMineralization;
avgSurfMetaNetMin[ecoregion.Index] += SiteVars.SurfaceMetabolic[site].NetMineralization;
avgSoilStrucNetMin[ecoregion.Index] += SiteVars.SoilStructural[site].NetMineralization;
avgSoilMetaNetMin[ecoregion.Index] += SiteVars.SoilMetabolic[site].NetMineralization;
avgSOM1surfNetMin[ecoregion.Index] += SiteVars.SOM1surface[site].NetMineralization;
avgSOM1soilNetMin[ecoregion.Index] += SiteVars.SOM1soil[site].NetMineralization;
avgSOM2NetMin[ecoregion.Index] += SiteVars.SOM2[site].NetMineralization;
avgSOM3NetMin[ecoregion.Index] += SiteVars.SOM3[site].NetMineralization;
//avgNDeposition[ecoregion.Index] = EcoregionData.AnnualNDeposition[ecoregion];
avgStreamC[ecoregion.Index] += SiteVars.Stream[site].Carbon;
avgStreamN[ecoregion.Index] += SiteVars.Stream[site].Nitrogen;
avgFireCEfflux[ecoregion.Index] += SiteVars.FireCEfflux[site];
avgFireNEfflux[ecoregion.Index] += SiteVars.FireNEfflux[site];
avgNresorbed[ecoregion.Index] += SiteVars.ResorbedN[site];
avgNuptake[ecoregion.Index] += GetSoilNuptake(site);
avgNvol[ecoregion.Index] += SiteVars.Nvol[site];
avgfrassC[ecoregion.Index] += SiteVars.FrassC[site];
}
foreach (IEcoregion ecoregion in PlugIn.ModelCore.Ecoregions)
{
if (!ecoregion.Active)
{
continue;
}
primaryLog.Clear();
PrimaryLog pl = new PrimaryLog();
pl.Time = CurrentTime;
pl.EcoregionName = ecoregion.Name;
pl.EcoregionIndex = ecoregion.Index;
pl.NumSites = EcoregionData.ActiveSiteCount[ecoregion];
pl.NEEC = (avgNEEc[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOMTC = (avgSOMtc[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.AGB = (avgAGB[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.AG_NPPC = (avgAGNPPtc[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.BG_NPPC = (avgBGNPPtc[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.Litterfall = (avgLittertc[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.AgeMortality = (avgWoodMortality[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.MineralN = (avgMineralN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.TotalN = (avgTotalN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.GrossMineralization = (avgGrossMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.TotalNdep = (EcoregionData.AnnualNDeposition[ecoregion] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_Leaf = (avgCohortLeafC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_FRoot = (avgCohortFRootC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_Wood = (avgCohortWoodC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_CRoot = (avgCohortCRootC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadWood = (avgWoodC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadCRoot = (avgCRootC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadLeaf_Struc = (avgSurfStrucC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadLeaf_Meta = (avgSurfMetaC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadFRoot_Struc = (avgSoilStrucC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_DeadFRoot_Meta = (avgSoilMetaC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_SOM1surf = (avgSOM1surfC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_SOM1soil = (avgSOM1soilC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_SOM2 = (avgSOM2C[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.C_SOM3 = (avgSOM3C[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_Leaf = (avgCohortLeafN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_FRoot = (avgCohortFRootN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_Wood = (avgCohortWoodN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_CRoot = (avgCohortCRootN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadWood = (avgWoodN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadCRoot = (avgCRootN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadLeaf_Struc = (avgSurfStrucN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadLeaf_Meta = (avgSurfMetaN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadFRoot_Struc = (avgSoilStrucN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_DeadFRoot_Meta = (avgSoilMetaN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_SOM1surf = (avgSOM1surfN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_SOM1soil = (avgSOM1soilN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_SOM2 = (avgSOM2N[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.N_SOM3 = (avgSOM3N[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SurfStrucNetMin = (avgSurfStrucNetMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SurfMetaNetMin = (avgSurfMetaNetMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SoilStrucNetMin = (avgSoilStrucNetMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SoilMetaNetMin = (avgSoilMetaNetMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOM1surfNetMin = (avgSOM1surfNetMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOM1soilNetMin = (avgSOM1soilNetMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOM2NetMin = (avgSOM2NetMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.SOM3NetMin = (avgSOM3NetMin[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.StreamC = (avgStreamC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.StreamN = (avgStreamN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.FireCEfflux = (avgFireCEfflux[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.FireNEfflux = (avgFireNEfflux[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.Nuptake = (avgNuptake[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.Nresorbed = (avgNresorbed[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.TotalSoilN = (avgTotalSoilN[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.Nvol = (avgNvol[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
pl.FrassC = (avgfrassC[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
primaryLog.AddObject(pl);
primaryLog.WriteToFile();
}
//Reset back to zero:
//These are being reset here because fire effects are handled in the first year of the
//growth loop but the reporting doesn't happen until after all growth is finished.
SiteVars.FireCEfflux.ActiveSiteValues = 0.0;
SiteVars.FireNEfflux.ActiveSiteValues = 0.0;
}