//called during GMV calculation in mainwindow.xaml.cs
//if enough time has passed and there is information in the serial port then read that information and send information back to the mainwindow
//also saves the serial port info to file
public bool checkSerialInput(double totalSecondsElapsed)
{
bool receivedTreat = false;
if (usingSerial)
{
if ((lastSerialRead) < totalSecondsElapsed - .5)
{
try
{
lastTreat = serialPort1.ReadLine();
}
catch (Exception ex)
{
lastTreat = null;
Console.WriteLine(ex.ToString());
}
lastSerialRead = totalSecondsElapsed;
if (lastTreat != null)
{
receivedTreat = true;
fileHandler.SaveEventData(totalSecondsElapsed, lastTreat);
}
}
}
return(receivedTreat);
}
//called from within ProcessDepthFrameData iff the frame is the nth frame of n = frameAcceptance
//calculates movement, checks for events from arduino, and sends email updates
private void calculateMovement(int[] depth, int fwidth, int fheight)
{
#region GMVCalculation
//breaks the area of interest into a set number of quadrands
//calculates the leftmost, rightmost, topmost, bottommost, closest, and furthest pixels associated with the viewable object
//adds the magnitude of these values together for each quadrant to create the GMV
//This section can be easily adapted for more complex behavioral measurements
int numberofQuadrants = quadrantDiv * quadrantDiv;
int quadHeight = (quadMarginYB - quadMarginYT) / quadrantDiv;
int quadWidth = (quadMarginXR - quadMarginXL) / quadrantDiv;
int[] iLeftPos = new int[numberofQuadrants];
int[] iRightPos = new int[numberofQuadrants];
int[] iTopPos = new int[numberofQuadrants];
int[] iBotPos = new int[numberofQuadrants];
int[] iDepthMin = new int[numberofQuadrants];
int[] iDepthMax = new int[numberofQuadrants];
int[] allMovementValue = new int[numberofQuadrants];
for (int quadY = 0; quadY < quadrantDiv; quadY++)
{
for (int quadX = 0; quadX < quadrantDiv; quadX++)
{
int yStart = (quadY * quadHeight + quadMarginYT);
int yMax = (quadY * quadHeight + quadHeight + quadMarginYT);
int quadDex = quadX + quadY * quadrantDiv;
for (int iiy = yStart; iiy < yMax; iiy++)
{
int xStart = (quadX * quadWidth + quadMarginXL);
int xMax = (quadX * quadWidth + quadWidth + quadMarginXL);
for (int iii = xStart; iii < xMax; iii++)
{
int depthIndex = iii + iiy * fwidth;
if (depth[depthIndex] != 0) //only use values that have a depth value (if above or below depth thresholds=> gets set to zero)
{
if (iii < iLeftPos[quadDex]) //if a value is "more left" than the current value then update the value
{
iLeftPos[quadDex] = iii;
}
if (iii > iRightPos[quadDex])
{
iRightPos[quadDex] = iii;
}
if (iTopPos[quadDex] == 0) //can just grab first value since starting at the top right corner
{
iTopPos[quadDex] = iiy;
}
if (iiy > iBotPos[quadDex]) //if a value is "lower" than the current value then update the value
{
iBotPos[quadDex] = iiy;
}
if (depth[depthIndex] < iDepthMin[quadDex]) //if a value is "further forward" than the current value then update the value
{
iDepthMin[quadDex] = depth[depthIndex];
}
if (depth[depthIndex] > iDepthMax[quadDex])//if a value is "further back" than the current value then update the value
{
iDepthMax[quadDex] = depth[depthIndex];
}
}
}
}
}
}
// initializer when no previous depth value exists
if (iLeftPosOld == null)
{
iLeftPosOld = iLeftPos;
iRightPosOld = iRightPos;
iTopPosOld = iTopPos;
iBotPosOld = iBotPos;
iDepthMinOld = iDepthMin;
iDepthMaxOld = iDepthMax;
}
//calculate the difference between the old and new frame values for each quadrant and add them together
int iMovementValue = 0;
for (int quadY = 0; quadY < quadrantDiv; quadY++)
{
for (int quadX = 0; quadX < quadrantDiv; quadX++)
{
int quadDex = quadX + quadY * quadrantDiv;
int leftDiff = 0;
int rightDiff = 0;
int topDiff = 0;
int botDiff = 0;
int depthMinDiff = 0;
int depthMaxDiff = 0;
//dont want to subtract zero values from old or new since zero value means invalid calculation (above noise threshold)
if (iLeftPos[quadDex] != 0 && iLeftPosOld[quadDex] != 0)
{
leftDiff = Math.Abs(iLeftPos[quadDex] - iLeftPosOld[quadDex]);
}
if (iRightPos[quadDex] != 0 && iRightPosOld[quadDex] != 0)
{
rightDiff = Math.Abs(iRightPos[quadDex] - iRightPosOld[quadDex]);
}
if (iTopPos[quadDex] != 0 && iTopPosOld[quadDex] != 0)
{
topDiff = Math.Abs(iTopPos[quadDex] - iTopPosOld[quadDex]);
}
if (iBotPos[quadDex] != 0 && iBotPosOld[quadDex] != 0)
{
botDiff = Math.Abs(iBotPos[quadDex] - iBotPosOld[quadDex]);
}
if (iDepthMin[quadDex] != 0 && iDepthMinOld[quadDex] != 0)
{
depthMinDiff = Math.Abs(iDepthMin[quadDex] - iDepthMinOld[quadDex]);
}
if (iDepthMax[quadDex] != 0 && iDepthMaxOld[quadDex] != 0)
{
depthMaxDiff = Math.Abs(iDepthMax[quadDex] - iDepthMaxOld[quadDex]);
}
if (leftDiff < noiseCutOff && rightDiff < noiseCutOff && topDiff < noiseCutOff && botDiff < noiseCutOff && depthMinDiff < noiseCutOff && depthMaxDiff < noiseCutOff)
{
allMovementValue[quadDex] = leftDiff + rightDiff + topDiff + depthMinDiff;
}
iMovementValue += allMovementValue[quadDex]; //calculate final movement value
}
}
//display GMV on UI
this.DepthDiff.Dispatcher.BeginInvoke(new Action(() =>
{
DepthDiff.Text = string.Format("GMV: {0}", iMovementValue);
}));
//assign old values for next frame comparison
iLeftPosOld = iLeftPos;
iRightPosOld = iRightPos;
iTopPosOld = iTopPos;
iBotPosOld = iBotPos;
iDepthMinOld = iDepthMin;
iDepthMaxOld = iDepthMax;
#endregion
//update UI display with elapsed time information
TimeSpan elapsed = DateTime.Now.Subtract(timeStart);
this.TimeElapsed.Dispatcher.BeginInvoke(new Action(() =>
{
int s = (int)elapsed.TotalSeconds;
int ds = (int)(elapsed.TotalSeconds * 10 % 10);
TimeElapsed.Text = "elapsed: " + s.ToString() + "." + ds.ToString() + "s";
}));
//send flag to email handler to send email (will only send if enough time has passed since last email)
double currentTimeElapsed = Math.Floor(elapsed.TotalSeconds);
emailHandler.CheckEmailSend(currentTimeElapsed, counter);
//save the movement data to file
fileHandler.SaveMovementData(elapsed.TotalMilliseconds, allMovementValue);
//check to see if there was a control hub trigger send to the portHandler, if so then increment the event counter and flip the saving video flag
if (!savingVideo && saveVideoOnEvent) //only can occur if not already saving video
{
bool KinectFeederTrigger = portHandler.checkSerialInput(DateTime.Now.Subtract(timeStart).TotalSeconds);
if (KinectFeederTrigger) //
{
counter++;
fileHandler.SaveEventData(elapsed.TotalMilliseconds, "TIEvent");
this.TimeElapsed.Dispatcher.BeginInvoke(new Action(() =>
{ Counter.Text = string.Format("{0} Events", counter); }));
savingVideo = true;
}
}
// This is also the place to modify the system to set up a behavior contingency on the feeder.
//For example -> if GMV> threshold then could trigger the feeder, or could "turn on" the control hub such that other events can allow for the feeder to trigger
// this could allow for experiments where movement and a neural event must both be above a threshold to train complex behaviors or movement/activity dissociation
}