public void AddTile(Tile tile)
{
Contract.Requires(Tiles.FirstOrDefault((t) => t.Id == tile.Id) == null);
tile.PropertyChanged += Tile_Changed;
_tiles.Add(tile);
tile.Group = this;
RaiseTileDataChanged(tile, TileStateChangeAction.Add);
OnCollectionChangedAdd(TileCollectionChanged, tile);
ObserveIncomplete(tile);
}
protected void RaiseTileDataChanged(Tile tile, TileStateChangeAction action)
{
RaiseTileDataChanged(new TileChangedEventArgs(tile, action));
}
public static Tile Create(string tileFullPath, string groupRelativePath, double minTiffSize = 0.0, int channelCount = 2)
{
List<string> parts = tileFullPath.Trim().Split(Path.DirectorySeparatorChar).ToList();
if (parts.Count() > 0 && parts.Last().Length == 5)
{
int tileIndex;
if (Int32.TryParse(parts.Last(), out tileIndex))
{
Tile tile = new Tile() { Id = tileIndex };
tile.FullPath = tileFullPath;
tile.RelativePath = Path.Combine(groupRelativePath, parts.Last());
tile.ExpectedChannelCount = channelCount;
tile.MinTiffFileSize = minTiffSize;
return tile;
}
}
return null;
}
public bool RemoveTile(Tile tile)
{
foreach (TileDay day in Days)
{
if (day.RemoveTile(tile))
return true;
}
return false;
}
private void ObserveIncomplete(Tile tile, bool isRemoval = false)
{
if ((tile.IsComplete || isRemoval) && _incompleteTiles.ContainsKey(tile.Id))
{
Tile unused;
if (_incompleteTiles.TryRemove(tile.Id, out unused))
{
RaiseTileDataChanged(tile, TileStateChangeAction.Complete);
OnCollectionChangedRemove(IncompleteCollectionChanged, tile);
}
}
else if (tile.IsEvaluated && !tile.IsComplete && !_incompleteTiles.ContainsKey(tile.Id))
{
if (_incompleteTiles.TryAdd(tile.Id, tile))
{
RaiseTileDataChanged(tile, TileStateChangeAction.Incomplete);
OnCollectionChangedAdd(IncompleteCollectionChanged, tile);
}
}
}
public ThumbnailEventArgs(int index, Tile tile)
: base()
{
Index = index;
Tile = tile;
}
public bool RemoveTile(Tile tile)
{
if (!Tiles.Contains(tile))
return false;
tile.PropertyChanged -= Tile_Changed;
_tiles.Remove(tile);
ObserveIncomplete(tile, true);
RaiseTileDataChanged(tile, TileStateChangeAction.Remove);
OnCollectionChangedRemove(TileCollectionChanged, tile);
return true;
}
public TileChangedEventArgs(Tile tile, TileStateChangeAction action)
{
_context = new TileChangedMonitorContext(tile, action);
_context._day.Tile = tile;
}
public void QueueTiff(string file, Tile tile, int channelIndex, bool generateThumbnail)
{
QueueTiff(new ChannelImageQueueItem() { FileName = file, Tile = tile, Channel = channelIndex, ShouldGenerateThumbnail = generateThumbnail });
}
public TileChangedDayContext(Tile tile)
{
Tile = tile;
}
public TileChangedMonitorContext(Tile tile, TileStateChangeAction action)
{
_day = new TileChangedDayContext(tile);
_day.Action = action;
}
private bool ProcessTile(Tile tile)
{
if (this.IsEmerging && !tile.IsEvaluated)
{
Trace.TraceInformation("Processing emerging tile {0}.", tile.FullPath);
}
bool wasEvaluated = tile.IsEvaluated;
if (tile.IsComplete)
{
Trace.TraceInformation("Skipping complete tile {0}.", tile.FullPath);
return true;
}
// Check for removal
if (wasEvaluated && !Directory.Exists(tile.FullPath))
{
if (tile.Group != null)
{
tile.Group.RemoveTile(tile);
}
return true;
}
try
{
tile.BeginCoalescePropertyEvents();
foreach (var file in Directory.GetFiles(tile.FullPath))
{
switch (Path.GetExtension(file))
{
case ".acquisition":
{
if (!tile.HaveAcquisition)
tile.EvaluateAcquisition(file);
}
break;
case ".microscope":
{
if (!tile.HaveMicroscope)
tile.EvaluateMicroscope(file);
}
break;
case ".tif":
{
// Query frame count if asked for in the options and either:
// 1) This is an emerging worker and the tile has never been evaluated (the often-idle emerging queue is sometimes used
// for other tasks such as re-evaluating incomplete tiles)
// 2) We aren't using implicit values for existing, or we haven't yet established an implicit value.
bool shouldQueryFrameCount = UserOptions.Default.QueryTiffMetadata && UserOptions.Default.QueryTiffFrameCount
&& ((IsEmerging && !wasEvaluated) || !UserOptions.Default.UseImplicitTIFFMetaData || !HaveImplicitFrameCount());
int channel = tile.EvaluateChannel(file, (UserOptions.Default.QueryTiffMetadata && !IsEmerging), shouldQueryFrameCount);
if (channel > -1)
{
if (UserOptions.Default.UseImplicitTIFFMetaData)
{
// If using an implicit frame count we either
// 1) Don't have one, just queried the current tile, and may now have a value to use moving forward
// or
// 2) Skipped b/c we already have a value and need to update the tile with the implicit version
if (shouldQueryFrameCount)
{
ManageImplicitMetadata(tile.Contents.ImageContents[channel]);
}
else if (!IsEmerging && HaveImplicitFrameCount())
{
if (tile.Contents.ImageContents[channel].FileSize == ImplicitChannelFileSize)
{
ImageContent content = tile.Contents.ImageContents[channel];
content.FrameCount = ImplicitChannelFrameCount;
tile.SetImageContents(channel, content);
}
}
}
if (UserOptions.Default.QueryTiffContents && (IsEmerging || !UserOptions.Default.OnlyQueryEmergingTiffContents))
{
TiffEvaluateWorker queue = IsEmerging ? TiffEvaluateWorker.EmergingManager : TiffEvaluateWorker.ExistingManager;
// Queue tiff file for mean pixel value and possibly thumbnail preview. Be careful of already evaluated tiles
// submitted to the "emerging" queue to take advantage of idleness.
bool createThumbnail = (UserOptions.Default.ThumbnailsForExistingQueue || (IsEmerging && !wasEvaluated)) && (channel == ChannelForThumbnails);
queue.QueueTiff(file, tile, channel, createThumbnail);
}
}
}
break;
}
}
tile.IsEvaluated = true;
tile.EndCoalescePropertyEvents();
}
catch (Exception e)
{
Trace.TraceInformation("Tile processing exception: {0}", e.Message);
}
return tile.IsComplete;
}
private void EvaluateTile(Tile tile)
{
try
{
// If failed to load or otherwise exists but is considered incomplete, put back in the queue to try again later.
if (ProcessTile(tile))
ProcessedCount++;
else
IncompleteQueue.Enqueue(tile);
}
catch (Exception e)
{
Trace.TraceInformation("An exception occurred during tile evaluation. There may be an issue with the tile, but the worker will continue.\r\n\tException: {0}", e.Message);
IncompleteQueue.Enqueue(tile);
}
}
public bool RemoveTile(Tile tile)
{
foreach (var group in Groups)
{
if (group.RemoveTile(tile))
return true;
}
return false;
}