public void String_FindsResourceOnExactValue()
{
// Default search = partial from the start
var q = new Query().For("Patient").Where("family=Mckinney");
var r = index.Search(q);
Assert.IsTrue(r.Has("Patient/76"));
}
public void ChainWithModifierToString_DoesNotFindResourceOnWronglySpelledValue()
{
var q = new Query().For("Patient").Where("given=nancy").Where("provider:Organization.name=healthy");
var results = index.Search(q);
//results = index.Search("Patient", "given=\"ned\"&provider:Organization.name:partial=\"healthy\"");
Assert.IsTrue(results.Count == 0);
}
public void ChainWithModifierToStringExact_FindsResourceOnExactValue()
{
var q = new Query().For("Patient").Where("given=nancy").Where("provider:Organization.name:exact=Health Level Seven International");
var results = index.Search(q);
//results = index.Search("Patient", "given=\"ned\"&provider:Organization.name:exact=\"Health Level Seven International\"");
Assert.IsTrue(results.Count == 1);
}
public void ChainWithModifierToString_FindsResourceOnFirstPartOfValue()
{
var q = new Query().For("Patient").Where("given=nancy").Where("provider:Organization.name=health");
var results = index.Search(q);
//results = index.Search("Patient", "given=\"nancy\"&provider:Organization.name:partial=\"health\"");
Assert.IsTrue(results.Count == 1);
}
public void String_IgnoresAndReportsInvalidOperator()
{
var q = new Query().For("Patient").Where("family=>Mckinney");
var r = index.Search(q);
Assert.IsTrue(r.HasIssues);
Assert.AreEqual(String.Empty, r.UsedCriteria);
Assert.IsTrue(r.Count > 0); //All Patient resources should be found.
}
public void RetrieveCriteria()
{
var q = new Query()
.For("Patient").Where("name:exact=ewout").OrderBy("birthDate", SortOrder.Descending)
.SummaryOnly().Include("Patient.managingOrganization")
.LimitTo(20);
Assert.AreEqual(1, q.Criteria.Count());
Assert.AreEqual("ewout", Query.ExtractParamValue(q.Criteria.First()));
}
internal static Query Load (String resource, IEnumerable<Tuple<String, String>> parameters)
{
Query result = new Query();
result.ResourceType = resource;
foreach (var p in parameters)
{
result.AddParameter(p.Item1, p.Item2);
};
return result;
}
private List <Criterium> parseCriteria(F.Query query, SearchResults results)
{
var result = new List <Criterium>();
foreach (var c in query.Criteria)
{
try
{
result.Add(Criterium.Parse(c));
}
catch (Exception ex)
{
results.AddIssue(String.Format("Could not parse parameter [{0}] for reason [{1}].", c.ToString(), ex.Message));
}
}
return(result);
}
public void ReapplySingleParam()
{
var q = new Query()
.Custom("mySearch").OrderBy("adsfadf").OrderBy("q", SortOrder.Descending)
.LimitTo(10).LimitTo(20).Custom("miSearch").SummaryOnly().SummaryOnly(false);
Assert.AreEqual("miSearch", q.QueryName);
Assert.IsFalse(q.Summary);
var o = q.Sort;
Assert.AreEqual("q", o.Item1);
Assert.AreEqual(SortOrder.Descending, o.Item2);
Assert.AreEqual(20, q.Count);
Assert.IsFalse(q.Summary);
}
public void ManipulateParameters()
{
var q = new Query();
q.AddParameter("testX", "someVal");
q.AddParameter("testX", "someVal2");
q.AddParameter("testXY", "someVal3");
var vals = q.GetValues("testX");
Assert.AreEqual(2, vals.Count());
Assert.AreEqual("someVal", vals.First());
Assert.AreEqual("someVal2", vals.Skip(1).First());
Assert.AreEqual("someVal3", q.GetSingleValue("testXY"));
q.RemoveParameter("testXY");
Assert.IsNull(q.GetSingleValue("testXY"));
Assert.AreEqual(2, q.GetValues("testX").Count());
}
public static RestUrl Search(this RestUrl url, Query q)
{
// The ResourceType is the only parameter that needs special handling,
// since the others are all "normal" parameters. Just make sure we don't
// include the special _type parameter on the REST url
var result = url.Search(q.ResourceType);
foreach (var par in q.Parameter)
{
var paramKey = Query.ExtractParamKey(par);
if (paramKey != Query.SEARCH_PARAM_TYPE)
{
result.AddParam(Query.ExtractParamKey(par),
Query.ExtractParamValue(par));
}
}
return result;
}
public SearchResults Search(F.Query query)
{
SearchResults results = new SearchResults();
var criteria = parseCriteria(query, results);
if (!results.HasErrors)
{
results.UsedCriteria = criteria;
var normalizedCriteria = NormalizeNonChainedReferenceCriteria(criteria, query.ResourceType);
List <BsonValue> keys = CollectKeys(query.ResourceType, normalizedCriteria, results);
int numMatches = keys.Count();
results.AddRange(KeysToSearchResults(keys));
results.MatchCount = numMatches;
}
return(results);
}
public void TestProperties()
{
var q = new Query();
q.QueryName = "special";
q.ResourceType = "Patient";
q.Count = 31;
q.Summary = true;
q.Sort = Tuple.Create("sorted", SortOrder.Descending);
q.Includes.Add("Patient.name");
q.Includes.Add("Observation.subject");
Assert.AreEqual("special", q.QueryName);
Assert.AreEqual("Patient", q.ResourceType);
Assert.AreEqual(31, q.Count);
Assert.AreEqual(true, q.Summary);
Assert.AreEqual(Tuple.Create("sorted", SortOrder.Descending), q.Sort);
Assert.AreEqual(2, q.Includes.Count);
Assert.AreEqual("Patient.name", q.Includes.First());
Assert.AreEqual("Observation.subject", q.Includes.Skip(1).First());
q.QueryName = "special2";
q.ResourceType = "Observation";
q.Count = 32;
q.Summary = false;
q.Sort = Tuple.Create("sorted2", SortOrder.Ascending);
q.Includes.Add("Patient.name2");
q.Includes.Remove("Patient.name");
q.Includes.Add("Observation.subject2");
Assert.AreEqual("special2", q.QueryName);
Assert.AreEqual("Observation", q.ResourceType);
Assert.AreEqual(32, q.Count);
Assert.AreEqual(false, q.Summary);
Assert.AreEqual(Tuple.Create("sorted2", SortOrder.Ascending), q.Sort);
Assert.AreEqual(3, q.Includes.Count);
Assert.IsTrue(q.Includes.Contains("Patient.name2"));
Assert.IsFalse(q.Includes.Contains("Patient.name"));
Assert.IsTrue(q.Includes.Contains("Observation.subject"));
Assert.IsTrue(q.Includes.Contains("Observation.subject2"));
}
public void ManageSearchResult()
{
var q = new Query()
.For("Patient").Where("name:exact=ewout").OrderBy("birthDate", SortOrder.Descending)
.SummaryOnly().Include("Patient.managingOrganization")
.LimitTo(20);
var x = FhirSerializer.SerializeResourceToXml(q);
Console.WriteLine(x);
Assert.AreEqual("Patient", q.ResourceType);
var p = q.Parameter.SingleWithName("name");
Assert.AreEqual("name:exact", Query.ExtractParamKey(p));
Assert.AreEqual("ewout", Query.ExtractParamValue(p));
var o = q.Sort;
Assert.AreEqual("birthDate", o.Item1);
Assert.AreEqual(SortOrder.Descending, o.Item2);
Assert.IsTrue(q.Summary);
Assert.IsTrue(q.Includes.Contains("Patient.managingOrganization"));
Assert.AreEqual(20,q.Count);
}
public void String_FindsResourceOnTwoExactValues()
{
var q = new Query().For("Patient").Where("given=nancy").Where("family=nuclear");
var results = index.Search(q);
//results = index.Search("Patient", "given=\"nancy\"&family=\"nuclear\"");
Assert.IsTrue(results.Count == 1);
}
public void Reference_FindsResourceOnValidId()
{
var q = new Query().For("Patient").Where("given=ned").Where("provider=Organization/hl7");
var results = index.Search(q);
Assert.AreEqual(1, results.Count);
}
public void ChainWithModifierToToken_FindsResourceOnTokenCode()
{
// THE WORKS
var q = new Query().For("Condition").Where("subject.identifier=12345");
var results = index.Search(q);
//results = index.Search("Condition", "subject.identifier=12345");
Assert.IsTrue(results.Count >= 2);
Assert.IsTrue(results.Has("Condition/example"));
Assert.IsTrue(results.Has("Condition/example2"));
}
public void StringExact_DoesNotFindResourceOnValueWithDifferentCapitalization()
{
var q = new Query().For("Patient").Where("family:exact=McKinney");
var r = index.Search(q);
Assert.IsFalse(r.Has("Patient/76"));
}
public void StringExact_DoesNotFindResourceOnFirstPartOfValue()
{
var q = new Query().For("Patient").Where("family:exact=Mckinn");
var r = index.Search(q);
Assert.IsFalse(r.Has("Patient/76"));
}
public void TripleChainToId_FindsResource()
{
var q = new Query().For("CarePlan").Where("condition.asserter.provider._id=Organization/1");
var results = index.Search(q);
Assert.AreEqual(1, results.Count);
//TODO: Resulting query is OK, but there is no matching data in the examples. Find an example that does return a result.
}
public void TripleChainToString_FindsResourceOnExactValue()
{
var q = new Query().For("CarePlan").Where("condition.asserter.provider.name=Gastroenterology");
var results = index.Search(q);
Assert.AreEqual(1, results.Count);
//TODO: Resulting query is OK, but there is no matching data in the examples. Find an example that does return a result.
}
public void Token_FindsResourceOnNamespaceAndCode()
{
var q = new Query().For("Practitioner").Where("gender=urn:oid:2.16.840.1.113883.4.642.1.24|F");
var results = index.Search(q);
Assert.IsTrue(results.Has("Practitioner/f005"));
}
public void Token_FindsResourceOnText()
{
var q = new Query().For("Patient").Where("gender:text=male");
var results = index.Search(q); // partial search op code, text or display. (includes "female"!)
Assert.IsTrue(results.Has("Patient/80")); // Vera (woman)
}
public void Token_ExcludesResourceWhenNamespaceMatchesButCodeDoesNot()
{
var q = new Query().For("Practitioner").Where("gender=urn:oid:2.16.840.1.113883.4.642.1.24|M");
var results = index.Search(q);
Assert.IsFalse(results.Has("Practitioner/f005"));
}
public void Token_FindsResourceOnCodeOnly()
{
// No modifier
var q = new Query().For("Patient").Where("gender=F");
var results = index.Search(q);
Assert.IsTrue(results.Has("Patient/80")); // Vera (woman)
}
public void TokenText_FindsResourceOnEnglishText()
{
// Text modifier
var q = new Query().For("Patient").Where("language:text=dutch");
var results = index.Search(q);
Assert.IsTrue(results.Has("Patient/f001"));
Assert.IsTrue(results.Has("Patient/f201"));
}
public void StringExact_FindsResourceOnExactValue()
{
var q = new Query().For("Patient").Where("family:exact=Mckinney");
var r = index.Search(q);
Assert.IsTrue(r.Has("Patient/76"));
}
public void String_DoesNotFindResourceOnMiddlePartOfValue()
{
var q = new Query().For("Patient").Where("family=kinne");
var r = index.Search(q);
Assert.IsFalse(r.Has("Patient/76"));
}
public void String_DoesNotFindResourceOnWronglySpelledValue()
{
var q = new Query().For("Patient").Where("family=Mckinley");
var r = index.Search(q);
Assert.IsFalse(r.Has("Patient/76"));
}
public void String_FindsResourceOnFirstPartOfValue()
{
var q = new Query().For("Patient").Where("family=Mckinn");
var r = index.Search(q);
Assert.IsTrue(r.Has("Patient/76"));
}
public static void SerializeQuery(Hl7.Fhir.Model.Query value, IFhirWriter writer, bool summary)
{
writer.WriteStartRootObject("Query");
writer.WriteStartComplexContent();
// Serialize element _id
if (value.LocalIdElement != null)
{
writer.WritePrimitiveContents("_id", value.LocalIdElement, XmlSerializationHint.Attribute);
}
// Serialize element extension
if (value.Extension != null && !summary && value.Extension.Count > 0)
{
writer.WriteStartArrayElement("extension");
foreach (var item in value.Extension)
{
writer.WriteStartArrayMember("extension");
ExtensionSerializer.SerializeExtension(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element language
if (value.LanguageElement != null && !summary)
{
writer.WriteStartElement("language");
CodeSerializer.SerializeCode(value.LanguageElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element text
if (value.Text != null && !summary)
{
writer.WriteStartElement("text");
NarrativeSerializer.SerializeNarrative(value.Text, writer, summary);
writer.WriteEndElement();
}
// Serialize element contained
if (value.Contained != null && !summary && value.Contained.Count > 0)
{
writer.WriteStartArrayElement("contained");
foreach (var item in value.Contained)
{
writer.WriteStartArrayMember("contained");
FhirSerializer.SerializeResource(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element identifier
if (value.IdentifierElement != null && !summary)
{
writer.WriteStartElement("identifier");
FhirUriSerializer.SerializeFhirUri(value.IdentifierElement, writer, summary);
writer.WriteEndElement();
}
// Serialize element parameter
if (value.Parameter != null && !summary && value.Parameter.Count > 0)
{
writer.WriteStartArrayElement("parameter");
foreach (var item in value.Parameter)
{
writer.WriteStartArrayMember("parameter");
ExtensionSerializer.SerializeExtension(item, writer, summary);
writer.WriteEndArrayMember();
}
writer.WriteEndArrayElement();
}
// Serialize element response
if (value.Response != null && !summary)
{
writer.WriteStartElement("response");
QuerySerializer.SerializeQueryResponseComponent(value.Response, writer, summary);
writer.WriteEndElement();
}
writer.WriteEndComplexContent();
writer.WriteEndRootObject();
}
public void String_FindsResourceOnValueWithDifferentCapitialization()
{
var q = new Query().For("Patient").Where("family=McKinney");
var r = index.Search(q);
Assert.IsTrue(r.Has("Patient/76"));
}
public void TokenText_DoesNotFindResourceOnAcronym()
{
// Text modifier
var q = new Query().For("Patient").Where("language:text=nl");
var results = index.Search(q);
Assert.IsFalse(results.Has("Patient/f001"));
Assert.IsFalse(results.Has("Patient/f201"));
}
/// <summary>
/// Parse Query
/// </summary>
public static Hl7.Fhir.Model.Query ParseQuery(IFhirReader reader, ErrorList errors, Hl7.Fhir.Model.Query existingInstance = null)
{
Hl7.Fhir.Model.Query result = existingInstance != null ? existingInstance : new Hl7.Fhir.Model.Query();
string currentElementName = reader.CurrentElementName;
reader.EnterElement();
while (reader.HasMoreElements())
{
var atName = reader.CurrentElementName;
// Parse element extension
if (atName == "extension")
{
result.Extension = new List <Hl7.Fhir.Model.Extension>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "extension"))
{
result.Extension.Add(ExtensionParser.ParseExtension(reader, errors));
}
reader.LeaveArray();
}
// Parse element language
else if (atName == "language")
{
result.LanguageElement = CodeParser.ParseCode(reader, errors);
}
// Parse element text
else if (atName == "text")
{
result.Text = NarrativeParser.ParseNarrative(reader, errors);
}
// Parse element contained
else if (atName == "contained")
{
result.Contained = new List <Hl7.Fhir.Model.Resource>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "contained"))
{
result.Contained.Add(ParserUtils.ParseContainedResource(reader, errors));
}
reader.LeaveArray();
}
// Parse element _id
else if (atName == "_id")
{
result.LocalIdElement = Id.Parse(reader.ReadPrimitiveContents(typeof(Id)));
}
// Parse element identifier
else if (atName == "identifier")
{
result.IdentifierElement = FhirUriParser.ParseFhirUri(reader, errors);
}
// Parse element parameter
else if (atName == "parameter")
{
result.Parameter = new List <Hl7.Fhir.Model.Extension>();
reader.EnterArray();
while (ParserUtils.IsAtArrayElement(reader, "parameter"))
{
result.Parameter.Add(ExtensionParser.ParseExtension(reader, errors));
}
reader.LeaveArray();
}
// Parse element response
else if (atName == "response")
{
result.Response = QueryParser.ParseQueryResponseComponent(reader, errors);
}
else
{
errors.Add(String.Format("Encountered unknown element {0} while parsing {1}", reader.CurrentElementName, currentElementName), reader);
reader.SkipSubElementsFor(currentElementName);
result = null;
}
}
reader.LeaveElement();
return(result);
}