private void backgroundWorkerForCSVtoDB_DoWork(object sender, DoWorkEventArgs e)
{
BackgroundWorker worker = sender as BackgroundWorker;
CSVsr = new CsvFileReader(PathName);
CSVsr.Separator = this.Delimiter.ToCharArray()[0];
CsvRow OriginalNames = new CsvRow();
if (!CSVsr.ReadRow(OriginalNames))
{
CSVsr.Close();
return;
}
int ColPlateName = GetColIdxFor("Plate name", CSVWindow);
int ColCol = GetColIdxFor("Column", CSVWindow);
int ColRow = GetColIdxFor("Row", CSVWindow);
int ColWellPos = GetColIdxFor("Well position", CSVWindow);
int ColPhenotypeClass = GetColIdxFor("Phenotype Class", CSVWindow);
int[] ColsForDescriptors = GetColsIdxFor("Descriptor", CSVWindow);
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Text = "CSV -> DB : processing";
ProgressWindow.Show();
CsvRow CurrentDesc = new CsvRow();
int TotalPlateNumber = 0;
int TotalObjectNumber = 0;
int TotalWellNumber = 0;
string OriginalPlatePlateName;
string CurrentPlateName;
string ConvertedName;
this.CompleteReportString += "Source file: " + PathName + "\n";
this.CompleteReportString += OriginalNames.Count + " features selected.\n";
this.CompleteReportString += "Time stamp: " + DateTime.Now.ToString() + " \n";
if (CSVsr.ReadRow(CurrentDesc) == false) return;
do
{
if (ColPlateName == -1)
{
ConvertedName = OriginalPlatePlateName = CurrentPlateName = "Generated Plate Name";
}
else
{
OriginalPlatePlateName = CurrentDesc[ColPlateName];
CurrentPlateName = CurrentDesc[ColPlateName];
ConvertedName = "";
foreach (var c in System.IO.Path.GetInvalidFileNameChars())
ConvertedName = OriginalPlatePlateName.Replace(c, '-');
}
List<string> ListNameSignature = new List<string>();
for (int idxDesc = 0/*Mode + 1*/; idxDesc < ColsForDescriptors.Length/* + Mode + 1*/; idxDesc++)
{
string TmpSignature = OriginalNames[ColsForDescriptors[idxDesc]];
TmpSignature = TmpSignature.Replace('[', '_');
TmpSignature = TmpSignature.Replace(']', '_');
ListNameSignature.Add(TmpSignature);
}
ListNameSignature.Add("Phenotype_Class");
ListNameSignature.Add("Phenotype_Confidence");
cSQLiteDatabase SQDB = new cSQLiteDatabase(SelectedPath + "\\" + ConvertedName, ListNameSignature, true);
this.CompleteReportString += "\n" + CurrentPlateName + ":\n";
TotalPlateNumber++;
do
{
string OriginalWellPos;
int[] Pos = new int[2];
if (Mode == 1)
{
Pos = ConvertPosition(CurrentDesc[ColWellPos]);
if (Pos == null)
{
if (MessageBox.Show("Error in converting the current well position.\nGo to Edit->Options->Import-Export->Well Position Mode to fix this.\nDo you want continue ?", "Loading error !", MessageBoxButtons.YesNo, MessageBoxIcon.Error) == System.Windows.Forms.DialogResult.No)
{
CSVsr.Close();
return;
}
//else
// goto NEXTLOOP;
}
OriginalWellPos = CurrentDesc[ColWellPos];
}
else
{
if (int.TryParse(CurrentDesc[ColCol], out Pos[0]) == false)
goto NEXTLOOP;
if (int.TryParse(CurrentDesc[ColRow], out Pos[1]) == false)
goto NEXTLOOP;
OriginalWellPos = ConvertPosition(int.Parse(CurrentDesc[ColCol]), int.Parse(CurrentDesc[ColRow]));// "("+CurrentDesc[ColCol]+","+CurrentDesc[ColRow]+")";
}
string CurrentWellPos = OriginalWellPos;
cWellForDatabase WellForDB = new cWellForDatabase(OriginalPlatePlateName, Pos[0], Pos[1]);
cExtendedTable ListData = new cExtendedTable();
// for (int idxDesc = 0; idxDesc < ColsForDescriptors.Length; idxDesc++)
// ListData[idxDesc] = new List<double>();
ProgressWindow.richTextBoxForComment.AppendText(CurrentPlateName + " : " + CurrentWellPos + "\n");
//ProgressWindow.label.Refresh();
ProgressWindow.Refresh();
do
{
// CurrentWellPos = CurrentDesc[ColWellPos];
cExtendedList Signature = new cExtendedList();
for (int idxDesc = 0; idxDesc < ColsForDescriptors.Length; idxDesc++)
{
double Value;
if (double.TryParse(CurrentDesc[ColsForDescriptors[idxDesc]], NumberStyles.Any, CultureInfo.InvariantCulture/*.CreateSpecificCulture("en-US")*/, out Value))
{
if (double.IsNaN(Value))
Signature.Add(0);
else
Signature.Add(Value);
}
else
{
Signature.Add(0);
}
}
// if the class of the phenotype is defined in the file then use it
// if not, put it at 0
double ValueClass;
if ((ColPhenotypeClass != -1) && (double.TryParse(CurrentDesc[ColPhenotypeClass], out ValueClass) == true))
{
double IntValue = (int)(ValueClass) % cGlobalInfo.ListCellularPhenotypes.Count;
Signature.Add(IntValue);
}
else
{
Signature.Add(0);
}
// finally add the classification confidence column (1 by default)
Signature.Add(1);
ListData.Add(Signature);
// WellForDB.AddSignature(Signature);
// manage the end of the file
if (CSVsr.ReadRow(CurrentDesc) == false)
{
WellForDB.AddListSignatures(ListData);
cFeedBackMessage FeedBackMessage = SQDB.AddNewWell(WellForDB);
SQDB.CloseConnection();
// this.CompleteReportString += FeedBackMessage.Message + "\n";
goto NEXTLOOP;
}
if (ColPlateName == -1)
CurrentPlateName = "Generated Plate Name";
else
CurrentPlateName = CurrentDesc[ColPlateName];
if (Mode == 1)
CurrentWellPos = CurrentDesc[ColWellPos];
else
{
int ResCol;
int ResRow;
if ((!int.TryParse(CurrentDesc[ColCol], out ResCol)) || (!int.TryParse(CurrentDesc[ColRow], out ResRow))) goto NEXTLOOP;
CurrentWellPos = ConvertPosition(ResCol, ResRow);
}
TotalObjectNumber++;
// NEXTSIGNATURE: ;
} while (CurrentWellPos == OriginalWellPos);
TotalWellNumber++;
WellForDB.AddListSignatures(ListData);
SQDB.AddNewWell(WellForDB);
ReportTable.ListRowNames.Add(CurrentPlateName + " : " + CurrentWellPos);
ReportTable[0].Add(ListData.Count);
ReportTable[0].ListTags.Add(CurrentPlateName + " : " + CurrentWellPos + "\n" + ListData.Count + " objects");
this.CompleteReportString += "\t" + CurrentWellPos + " : " + ListData.Count + " objects\n";
NEXTSIGNATURE: ;
} while (OriginalPlatePlateName == CurrentPlateName);
SQDB.CloseConnection();
} while (true);
NEXTLOOP: ;
ProgressWindow.Close();
this.CompleteReportString += "\n-----------------------------\n";
this.CompleteReportString += TotalPlateNumber + " plates\n";
this.CompleteReportString += TotalWellNumber + " wells\n";
this.CompleteReportString += TotalObjectNumber + " objects\n";
this.CompleteReportString += "\nDataBase location:\n" + SelectedPath;
// worker.ReportProgress(10);
}
private void AverageOperationsToDescriptorItem(object sender, EventArgs e)
{
FormForDescOperations MainWindow = new FormForDescOperations(cGlobalInfo.CurrentScreening.ListDescriptors.GetListNames());
MainWindow.Text = "Average Based Operations";
if (MainWindow.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
string NewDescName = MainWindow.textBoxNewDescName.Text;
cDescriptorType DescType1 = cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorByName(MainWindow.comboBoxDescriptor1.Text);
cDescriptorType DescType2 = cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorByName(MainWindow.comboBoxDescriptor2.Text);
if ((DescType1 == null) || (DescType2 == null)) return;
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Show();
int IdxProgress = 1;
int MaxProgress = cGlobalInfo.CurrentScreening.ListPlatesAvailable.Count;
ProgressWindow.progressBar.Maximum = MaxProgress;
cDescriptorType NewDescType = new cDescriptorType(NewDescName, true, 1);
cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(NewDescType);
eBinaryOperationType PostProcessBinaryOp = eBinaryOperationType.UNDEFINED;
if (MainWindow.checkBoxActivePostProcess.Checked)
{
switch (MainWindow.domainUpDownPostProcessOperator.Text)
{
case "*":
PostProcessBinaryOp = eBinaryOperationType.MULTIPLY;
break;
case "+":
PostProcessBinaryOp = eBinaryOperationType.ADD;
break;
case "/":
PostProcessBinaryOp = eBinaryOperationType.DIVIDE;
break;
case "-":
PostProcessBinaryOp = eBinaryOperationType.SUBSTRACT;
break;
default:
return;
}
}
if (MainWindow.tabControlMain.SelectedTab.Name == "tabPageBinary")
{
// SingleCellOperation.ListDualOperations = new List<eBinaryOperationType>();
// eDualOperationType OperationType = eDualOperationType.ADD;
eBinaryOperationType BinaryOp = eBinaryOperationType.ADD;
switch (MainWindow.domainUpDown1.Text)
{
case "*":
BinaryOp = eBinaryOperationType.MULTIPLY;
break;
case "+":
BinaryOp = eBinaryOperationType.ADD;
break;
case "/":
BinaryOp = eBinaryOperationType.DIVIDE;
break;
case "-":
BinaryOp = eBinaryOperationType.SUBSTRACT;
break;
default:
return;
}
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
foreach (cWell Tmpwell in CurrentPlate.ListActiveWells)
{
cListSignature LDesc = new cListSignature();
cSignature NewDesc = null;
double Val = 0;
switch (BinaryOp)
{
case eBinaryOperationType.ADD:
Val = Tmpwell.GetAverageValue(DescType1) + Tmpwell.GetAverageValue(DescType2);
break;
case eBinaryOperationType.MULTIPLY:
Val = Tmpwell.GetAverageValue(DescType1) * Tmpwell.GetAverageValue(DescType2);
break;
case eBinaryOperationType.SUBSTRACT:
Val = Tmpwell.GetAverageValue(DescType1) - Tmpwell.GetAverageValue(DescType2);
break;
case eBinaryOperationType.DIVIDE:
double denominator = Tmpwell.GetAverageValue(DescType2);
if (denominator == 0) Val = 0;
else Val = Tmpwell.GetAverageValue(DescType1) / denominator;
break;
default:
break;
}
if (PostProcessBinaryOp != eBinaryOperationType.UNDEFINED)
{
double ValuePostProcess = (double)MainWindow.numericUpDownPostProcessValue.Value;
switch (PostProcessBinaryOp)
{
case eBinaryOperationType.ADD:
Val += ValuePostProcess;
break;
case eBinaryOperationType.SUBSTRACT:
Val -= ValuePostProcess;
break;
case eBinaryOperationType.MULTIPLY:
Val *= ValuePostProcess;
break;
case eBinaryOperationType.DIVIDE:
if (ValuePostProcess == 0)
Val = 0;
else
Val /= ValuePostProcess;
break;
default:
break;
}
}
NewDesc = new cSignature(Val, NewDescType, cGlobalInfo.CurrentScreening);
LDesc.Add(NewDesc);
Tmpwell.AddSignatures(LDesc);
}
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.richTextBoxForComment.AppendText(CurrentPlate.GetShortInfo());
ProgressWindow.Refresh();
}
}
#region unary operator
else
{
eUnaryOperationType OperationType = eUnaryOperationType.LOG;
if (MainWindow.radioButtonSQRT.Checked)
OperationType = eUnaryOperationType.SQRT;
else if (MainWindow.radioButtonLog.Checked)
OperationType = eUnaryOperationType.LOG;
else if (MainWindow.radioButtonABS.Checked)
OperationType = eUnaryOperationType.ABS;
else if (MainWindow.radioButtonEXP.Checked)
OperationType = eUnaryOperationType.EXP;
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
foreach (cWell Tmpwell in CurrentPlate.ListActiveWells)
{
cListSignature LDesc = new cListSignature();
cSignature NewDesc = null;
double Val = 0;
switch (OperationType)
{
case eUnaryOperationType.LOG:
Val = Math.Log(Tmpwell.GetAverageValue(DescType1));
if (double.IsInfinity(Val) || double.IsNaN(Val)) Val = double.Epsilon;
break;
case eUnaryOperationType.SQRT:
Val = Tmpwell.GetAverageValue(DescType1);
if (Val < 0) Val = 0;
Val = Math.Sqrt(Val);
break;
case eUnaryOperationType.ABS:
Val = Math.Abs(Tmpwell.GetAverageValue(DescType1));
break;
case eUnaryOperationType.EXP:
Val = Math.Exp(Tmpwell.GetAverageValue(DescType1));
break;
default:
break;
}
if (PostProcessBinaryOp != eBinaryOperationType.UNDEFINED)
{
double ValuePostProcess = (double)MainWindow.numericUpDownPostProcessValue.Value;
switch (PostProcessBinaryOp)
{
case eBinaryOperationType.ADD:
Val += ValuePostProcess;
break;
case eBinaryOperationType.SUBSTRACT:
Val -= ValuePostProcess;
break;
case eBinaryOperationType.MULTIPLY:
Val *= ValuePostProcess;
break;
case eBinaryOperationType.DIVIDE:
if (ValuePostProcess == 0)
Val = 0;
else
Val /= ValuePostProcess;
break;
default:
break;
}
}
NewDesc = new cSignature(Val, NewDescType, cGlobalInfo.CurrentScreening);
LDesc.Add(NewDesc);
Tmpwell.AddSignatures(LDesc);
}
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.richTextBoxForComment.AppendText(CurrentPlate.GetShortInfo());
ProgressWindow.Refresh();
}
}
#endregion
ProgressWindow.Close();
int IdxNull = 0;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell TmpWell in TmpPlate.ListActiveWells)
if (TmpWell.ListSignatures.Count != cGlobalInfo.CurrentScreening.ListDescriptors.Count)
IdxNull++;
}
if (IdxNull > 0)
System.Windows.Forms.MessageBox.Show("List signature count is different from list descriptor count", "Critical Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
// CompleteScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesAvailable.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
StartingUpDateUI();
this.toolStripcomboBoxPlateList.Items.Clear();
for (int IdxPlate = 0; IdxPlate < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; IdxPlate++)
{
string Name = cGlobalInfo.CurrentScreening.ListPlatesActive.GetPlate(IdxPlate).GetName();
this.toolStripcomboBoxPlateList.Items.Add(Name);
PlateListWindow.listBoxPlateNameToProcess.Items.Add(Name);
PlateListWindow.listBoxAvaliableListPlates.Items.Add(Name);
}
cGlobalInfo.CurrentScreening.CurrentDisplayPlateIdx = 0;
cGlobalInfo.CurrentScreening.SetSelectionType(comboBoxClass.SelectedIndex - 1);
UpdateUIAfterLoading();
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
}
private void TSItemSubPopSelectionDataTableImages(object sender, EventArgs e)
{
ToolStripMenuItem ParentTag = (ToolStripMenuItem)(sender);
List<int> MyList = ((List<int>)(ParentTag.Tag));
cExtendedTable ET = new cExtendedTable(this.InputSimpleData.Count, MyList.Count, 0);
for (int i = 0; i < this.InputSimpleData.Count; i++)
{
ET[i].Name = this.InputSimpleData[i].Name;
}
ET.ListRowNames = new List<string>();
for (int i = 0; i < MyList.Count; i++)
{
ET.ListRowNames.Add(i.ToString());
}
if (this.InputSimpleData.ListTags != null) ET.ListTags = new List<object>();
int IdxPt = 0;
FormForProgress FP = new FormForProgress();
FP.Show();
int MaxProgress = MyList.Count;
FP.progressBar.Maximum = MaxProgress;
foreach (var item in MyList)
{
for (int i = 0; i < this.InputSimpleData.Count; i++)
{
ET[i][IdxPt] = this.InputSimpleData[i][MyList[IdxPt]];
}
if ((this.InputSimpleData.ListTags != null) && (this.InputSimpleData.ListTags[IdxPt] != null))
{
if (this.InputSimpleData.ListTags[MyList[IdxPt]].GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject TmpBioObj = ((cSingleBiologicalObject)this.InputSimpleData.ListTags[MyList[IdxPt]]);
List<cImageMetaInfo> ListMeta = cGlobalInfo.ImageAccessor.GetImageInfo(TmpBioObj);
if (ListMeta==null) continue;
cImage Image = new cImage(ListMeta);
TmpBioObj.BD_BoxMax.Z = TmpBioObj.BD_BoxMin.Z = 0;
cImage CroppedImaged = Image.Crop(TmpBioObj.BD_BoxMin, TmpBioObj.BD_BoxMax);
if((cGlobalInfo.TmpImageDisplayProperties==null)||(cGlobalInfo.TmpImageDisplayProperties.ListMin.Count != CroppedImaged.GetNumChannels()))
{
ET.ListTags.Add(CroppedImaged.GetBitmap(1f, null, null));
}
else
{
cImageDisplayProperties IP = cGlobalInfo.TmpImageDisplayProperties;
ET.ListTags.Add(CroppedImaged.GetBitmap(1f, IP, null));
}
FP.richTextBoxForComment.AppendText("Object "+ IdxPt +" / "+MyList.Count +"\n");
}
}
FP.progressBar.Value = IdxPt;
FP.Refresh();
IdxPt++;
}
FP.Close();
ET.Name = "Data Table - " + MyList.Count + " Objects";
cDisplayExtendedTable DET = new cDisplayExtendedTable();
DET.SetInputData(ET);
DET.Run();
//DataPoint DP = new DataPoint();
//if (this.InputSimpleData[0].ListTags != null)
//{
// if (j >= this.InputSimpleData[0].ListTags.Count) continue;
// DP.Tag = this.InputSimpleData[0].ListTags[j];
// // if (DP.Tag.GetType() == typeof(cWell))
// // {
// // DP.Color = ((cWell)(DP.Tag)).GetClassColor();
// // DP.ToolTip = ((cWell)(DP.Tag)).GetShortInfo() + Value[0];
// // }
// if (DP.Tag.GetType() == typeof(cSingleBiologicalObject))
// {
// // DP.Color = ((cSingleBiologicalObject)(DP.Tag)).GetColor();
// // DP.ToolTip = ((cSingleBiologicalObject)(DP.Tag)).GetAssociatedPhenotype().Name + "\nValue: (" + DP.XValue.ToString("N2") + ":" + DP.YValues[0].ToString("N2") + ")";
// }
//}
}
private void SubPopulationStatDescItem(object sender, EventArgs e)
{
PanelForClassSelection ClassSelectionPanel = new PanelForClassSelection(true, eClassType.PHENOTYPE);
//ClassSelectionPanel.Height = WindowToDisplay.Height;
ClassSelectionPanel.UnSelectAll();
ClassSelectionPanel.Select(0);
ClassSelectionPanel.Select(1);
ClassSelectionPanel.Location = new System.Drawing.Point(10, 10);
ClassSelectionPanel.Width = 150;
ClassSelectionPanel.Height = ClassSelectionPanel.ListCheckBoxes.Count * 25;
ClassSelectionPanel.BorderStyle = BorderStyle.Fixed3D;
FormForStatDesc NewWindow = new FormForStatDesc(this.GlobalInfo);
NewWindow.panelForSubPopulation.Controls.Add(ClassSelectionPanel);
NewWindow.textBoxDescName.Text = cGlobalInfo.CurrentScreening.ListDescriptors[IntToTransfer].GetName() + "_Average";
if (NewWindow.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
if ((NewWindow.comboBoxStatistics.Text != "Average") && (NewWindow.comboBoxStatistics.Text != "Stdev") &&
(NewWindow.comboBoxStatistics.Text != "Sum") && (NewWindow.comboBoxStatistics.Text != "Median") && (NewWindow.comboBoxStatistics.Text != "MAD") && (NewWindow.comboBoxStatistics.Text != "CV%"))
return;
List<cCellularPhenotype> LCP = new List<cCellularPhenotype>();
for (int IdxPheno = 0; IdxPheno < ClassSelectionPanel.GetListSelectedClass().Count; IdxPheno++)
{
if (ClassSelectionPanel.GetListSelectedClass()[IdxPheno])
LCP.Add(cGlobalInfo.ListCellularPhenotypes[IdxPheno]);
}
if (LCP.Count == 0) return;
double RatioPopulation = 1;
string description = "This descriptor has been generated by computing the " + NewWindow.textBoxDescName.Text + " of " + RatioPopulation * 100 + "% the following phenotypic sub-populations:\n";
foreach (var item in LCP)
{
description += item.Name + "\n";
}
cDescriptorType NewAverageType = new cDescriptorType(NewWindow.textBoxDescName.Text, true, 1, description);
cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(NewAverageType);
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Show();
int IdxProgress = 0;
int MaxProgress = 0;
foreach (cPlate CurrentPlateToProcess in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
MaxProgress += (int)CurrentPlateToProcess.ListActiveWells.Count;
ProgressWindow.progressBar.Maximum = MaxProgress;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
foreach (cWell Tmpwell in TmpPlate.ListActiveWells)
{
TmpPlate.DBConnection = new cDBConnection(TmpPlate, Tmpwell.SQLTableName);
List<cDescriptorType> LDT = new List<cDescriptorType>();
LDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IntToTransfer]);
cExtendedTable CT = TmpPlate.DBConnection.GetWellValues(Tmpwell, LDT, LCP, RatioPopulation);
cListSignature LDesc = new cListSignature();
double Value = 0;
if (CT.Count == 1)
{
if (CT[0].Count == 0)
{
Value = 0;
richTextBoxConsole.AppendText(TmpPlate.GetName() + " : " + Tmpwell.GetShortInfo().Remove(Tmpwell.GetShortInfo().Length - 2) + ": no objects fullfill your request. Statistics set to null.\n");
}
else
{
if (NewWindow.comboBoxStatistics.Text == "Average")
Value = CT[0].Average();
else if (NewWindow.comboBoxStatistics.Text == "Stdev")
Value = CT[0].Std();
else if (NewWindow.comboBoxStatistics.Text == "Sum")
Value = CT[0].Sum();
else if (NewWindow.comboBoxStatistics.Text == "Median")
Value = CT[0].Median();
else if (NewWindow.comboBoxStatistics.Text == "MAD")
Value = CT[0].MAD(true);
else if (NewWindow.comboBoxStatistics.Text == "CV%")
Value = CT[0].CV();
}
}
ProgressWindow.richTextBoxForComment.AppendText(Tmpwell.GetShortInfo() + ": " + CT[0].Count.ToString() + " / " + Tmpwell.GetNumBiologicalObjects() + "\n");
cSignature NewDesc = new cSignature(Value, NewAverageType, cGlobalInfo.CurrentScreening);
LDesc.Add(NewDesc);
Tmpwell.AddSignatures(LDesc);
TmpPlate.DBConnection.CloseConnection();
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.richTextBoxForComment.AppendText(TmpPlate.GetName() + " : " + Tmpwell.GetShortInfo().Remove(Tmpwell.GetShortInfo().Length - 2) + "\n");
ProgressWindow.Refresh();
}
}
ProgressWindow.Close();
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
cGlobalInfo.CurrentScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
}
private void SingleCellOperationsToDescriptorItem(object sender, EventArgs e)
{
List<string> ListNamesDesc = new List<string>();
foreach (var item in cGlobalInfo.CurrentScreening.ListDescriptors)
{
if (item.GetDataType() != "Single")
{
ListNamesDesc.Add(item.GetName());
}
}
FormForDescOperations MainWindow = new FormForDescOperations(ListNamesDesc);
if (MainWindow.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
string NewDescName = MainWindow.textBoxNewDescName.Text;
cDescriptorType DescType1 = cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorByName(MainWindow.comboBoxDescriptor1.Text);
cDescriptorType DescType2 = cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorByName(MainWindow.comboBoxDescriptor2.Text);
if ((DescType1 == null) || (DescType2 == null)) return;
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Show();
int IdxProgress = 1;
int MaxProgress = cGlobalInfo.CurrentScreening.ListPlatesAvailable.Count;
ProgressWindow.progressBar.Maximum = MaxProgress;
cDescriptorType NewDescType = new cDescriptorType(NewDescName, true, 256, true);
cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(NewDescType);
//HCSAnalyzer.Classes.General_Types.cDBConnection.cSingleCellOperations SCO = new HCSAnalyzer.Classes.General_Types.cDBConnection.cSingleCellOperations()
cSingleCellOperations SingleCellOperation = new cSingleCellOperations();
if (MainWindow.tabControlMain.SelectedTab.Name == "tabPageBinary")
{
SingleCellOperation.ListDualOperations = new List<eBinaryOperationType>();
// eDualOperationType OperationType = eDualOperationType.ADD;
switch (MainWindow.domainUpDown1.Text)
{
case "*":
SingleCellOperation.ListDualOperations.Add(eBinaryOperationType.MULTIPLY);
break;
case "+":
SingleCellOperation.ListDualOperations.Add(eBinaryOperationType.ADD);
break;
case "/":
SingleCellOperation.ListDualOperations.Add(eBinaryOperationType.DIVIDE);
break;
case "-":
SingleCellOperation.ListDualOperations.Add(eBinaryOperationType.SUBSTRACT);
break;
default:
return;
}
if (MainWindow.checkBoxActivePostProcess.Checked)
{
SingleCellOperation.PostProcessingOperation = new List<eBinaryOperationType>();
switch (MainWindow.domainUpDownPostProcessOperator.Text)
{
case "*":
SingleCellOperation.PostProcessingOperation.Add(eBinaryOperationType.MULTIPLY);
break;
case "+":
SingleCellOperation.PostProcessingOperation.Add(eBinaryOperationType.ADD);
break;
case "/":
SingleCellOperation.PostProcessingOperation.Add(eBinaryOperationType.DIVIDE);
break;
case "-":
SingleCellOperation.PostProcessingOperation.Add(eBinaryOperationType.SUBSTRACT);
break;
default:
return;
}
SingleCellOperation.PostProcessingValue = (double)MainWindow.numericUpDownPostProcessValue.Value;
}
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
CurrentPlate.DBConnection.OpenConnection();
CurrentPlate.DBConnection.CreateNewColumn(NewDescType,
DescType1,
DescType2,
SingleCellOperation,
GlobalInfo, ref CurrentPlate.ListActiveWells);
CurrentPlate.DBConnection.CloseConnection();
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.richTextBoxForComment.AppendText(CurrentPlate.GetShortInfo());
ProgressWindow.Refresh();
}
}
else
{
eUnaryOperationType OperationType = eUnaryOperationType.LOG;
if (MainWindow.radioButtonSQRT.Checked)
OperationType = eUnaryOperationType.SQRT;
else if (MainWindow.radioButtonLog.Checked)
OperationType = eUnaryOperationType.LOG;
else if (MainWindow.radioButtonABS.Checked)
OperationType = eUnaryOperationType.ABS;
else if (MainWindow.radioButtonEXP.Checked)
OperationType = eUnaryOperationType.EXP;
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
CurrentPlate.DBConnection.OpenConnection();
CurrentPlate.DBConnection.CreateNewColumn(NewDescType,
DescType1,
OperationType,
GlobalInfo, ref CurrentPlate.ListActiveWells);
CurrentPlate.DBConnection.CloseConnection();
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.richTextBoxForComment.AppendText(CurrentPlate.GetShortInfo());
ProgressWindow.Refresh();
}
}
ProgressWindow.Close();
int IdxNull = 0;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell TmpWell in TmpPlate.ListActiveWells)
if (TmpWell.ListSignatures.Count != cGlobalInfo.CurrentScreening.ListDescriptors.Count)
IdxNull++;
}
if (IdxNull > 0)
System.Windows.Forms.MessageBox.Show("List signature count is different from list descriptor count", "Critical Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
// CompleteScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesAvailable.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
StartingUpDateUI();
this.toolStripcomboBoxPlateList.Items.Clear();
for (int IdxPlate = 0; IdxPlate < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; IdxPlate++)
{
string Name = cGlobalInfo.CurrentScreening.ListPlatesActive.GetPlate(IdxPlate).GetName();
this.toolStripcomboBoxPlateList.Items.Add(Name);
PlateListWindow.listBoxPlateNameToProcess.Items.Add(Name);
PlateListWindow.listBoxAvaliableListPlates.Items.Add(Name);
}
cGlobalInfo.CurrentScreening.CurrentDisplayPlateIdx = 0;
cGlobalInfo.CurrentScreening.SetSelectionType(comboBoxClass.SelectedIndex - 1);
UpdateUIAfterLoading();
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
}
private void SingleCellOperationPhenotypeConfidenceToDesc(object sender, EventArgs e)
{
//string description = "This descriptor has been generated by converting single cell phenotypic class into feature\n";
FormForNameRequest FFNR = new FormForNameRequest();
FFNR.Text = "Descriptor Name";
FFNR.textBoxForName.Text = "Classification Confidence";
if (FFNR.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
if (FFNR.textBoxForName.Text == "") return;
cDescriptorType NewDescType = new cDescriptorType(FFNR.textBoxForName.Text, true, cGlobalInfo.ListCellularPhenotypes.Count, true);
cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(NewDescType);
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Show();
int IdxProgress = 0;
int MaxProgress = 0;
foreach (cPlate CurrentPlateToProcess in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
MaxProgress += (int)CurrentPlateToProcess.ListActiveWells.Count;
ProgressWindow.progressBar.Maximum = MaxProgress;
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
CurrentPlate.DBConnection.OpenConnection();
CurrentPlate.DBConnection.CreateNewColumnFromExisting(NewDescType, "Phenotype_Confidence", GlobalInfo, ref CurrentPlate.ListActiveWells);
CurrentPlate.DBConnection.CloseConnection();
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.richTextBoxForComment.AppendText(CurrentPlate.GetShortInfo());
ProgressWindow.Refresh();
}
ProgressWindow.Close();
int IdxNull = 0;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell TmpWell in TmpPlate.ListActiveWells)
if (TmpWell.ListSignatures.Count != cGlobalInfo.CurrentScreening.ListDescriptors.Count)
IdxNull++;
}
if (IdxNull > 0)
System.Windows.Forms.MessageBox.Show("List signature count is different from list descriptor count", "Critical Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
// CompleteScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesAvailable.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
StartingUpDateUI();
this.toolStripcomboBoxPlateList.Items.Clear();
for (int IdxPlate = 0; IdxPlate < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; IdxPlate++)
{
string Name = cGlobalInfo.CurrentScreening.ListPlatesActive.GetPlate(IdxPlate).GetName();
this.toolStripcomboBoxPlateList.Items.Add(Name);
PlateListWindow.listBoxPlateNameToProcess.Items.Add(Name);
PlateListWindow.listBoxAvaliableListPlates.Items.Add(Name);
}
cGlobalInfo.CurrentScreening.CurrentDisplayPlateIdx = 0;
cGlobalInfo.CurrentScreening.SetSelectionType(comboBoxClass.SelectedIndex - 1);
UpdateUIAfterLoading();
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
}
private void RatioPopDescItem(object sender, EventArgs e)
{
cGUI_2ClassesSelection GUI_ListClasses = new cGUI_2ClassesSelection();
GUI_ListClasses.ClassType = eClassType.PHENOTYPE;
GUI_ListClasses.PanelRight_IsCheckBoxes = true;
GUI_ListClasses.PanelLeft_IsCheckBoxes = true;
if (GUI_ListClasses.Run(this.GlobalInfo).IsSucceed == false) return;
List<cCellularPhenotype> LCP0 = new List<cCellularPhenotype>();
List<cCellularPhenotype> LCP1 = new List<cCellularPhenotype>();
for (int IdxPheno = 0; IdxPheno < GUI_ListClasses.GetOutPut()[0].Count; IdxPheno++)
{
if (GUI_ListClasses.GetOutPut()[0][IdxPheno] == 1)
LCP0.Add(cGlobalInfo.ListCellularPhenotypes[IdxPheno]);
if (GUI_ListClasses.GetOutPut()[1][IdxPheno] == 1)
LCP1.Add(cGlobalInfo.ListCellularPhenotypes[IdxPheno]);
}
//if (LCP.Count == 0) return;
string description = "Ratio of:\n";
foreach (var item in LCP0)
description += item.Name + "\n";
description += "over\n";
foreach (var item in LCP1)
description += item.Name + "\n";
cDescriptorType NewAverageType = new cDescriptorType("Ratio_Pop", true, 1, description);
cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(NewAverageType);
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Show();
int IdxProgress = 0;
int MaxProgress = 0;
foreach (cPlate CurrentPlateToProcess in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
MaxProgress += (int)CurrentPlateToProcess.ListWells.Count;
ProgressWindow.progressBar.Maximum = MaxProgress;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
foreach (cWell Tmpwell in TmpPlate.ListWells)
{
TmpPlate.DBConnection = new cDBConnection(TmpPlate, Tmpwell.SQLTableName);
List<cDescriptorType> LDT = new List<cDescriptorType>();
LDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors[0]);
cExtendedTable CT = TmpPlate.DBConnection.GetWellValues(Tmpwell, LDT, LCP0, 1);
double NumObject0 = CT[0].Count;
cExtendedTable CT1 = TmpPlate.DBConnection.GetWellValues(Tmpwell, LDT, LCP1, 1);
double NumObject1 = CT1[0].Count;
cListSignature LDesc = new cListSignature();
double Value = 0;
if (NumObject1 == 0)
Value = 0;
else
Value = NumObject0 / NumObject1;
cSignature NewDesc = new cSignature(Value, NewAverageType, cGlobalInfo.CurrentScreening);
LDesc.Add(NewDesc);
Tmpwell.AddSignatures(LDesc);
TmpPlate.DBConnection.CloseConnection();
ProgressWindow.richTextBoxForComment.AppendText(TmpPlate.GetName() + " : " + Tmpwell.GetShortInfo().Remove(Tmpwell.GetShortInfo().Length - 2) + "\n");
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.Refresh();
}
}
ProgressWindow.Close();
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
cGlobalInfo.CurrentScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
}
public void PerformClassification()
{
FormForSingleCellClassifOptions FFSC = new FormForSingleCellClassifOptions();
//cGUI_ListClasses GLC = new cGUI_ListClasses();
//GLC.ClassType = eClassType.PHENOTYPE;
//GLC.IsCheckBoxes = true;
//GLC.IsSelectAll = true;
//GLC.Run(GlobalInfo);
PanelForClassSelection PhenotypeSelectionPanel = new PanelForClassSelection( true, eClassType.PHENOTYPE);
PhenotypeSelectionPanel.Height = FFSC.panelPhenoToBeClassified.Height;
FFSC.panelPhenoToBeClassified.Controls.Add(PhenotypeSelectionPanel);
PanelForClassSelection WellClassSelectionPanel = new PanelForClassSelection( true, eClassType.WELL);
WellClassSelectionPanel.Height = FFSC.panelWellToBeClassified.Height;
FFSC.panelWellToBeClassified.Controls.Add(WellClassSelectionPanel);
PanelForPlatesSelection PlatesSelectionPanel = new PanelForPlatesSelection( true, null, true);
PlatesSelectionPanel.Height = FFSC.panelWellToBeClassified.Height;
FFSC.tabPagePlates.Controls.Add(PlatesSelectionPanel);
if (FFSC.ShowDialog() != DialogResult.OK) return;
// ----------------------- Classification ------------------------------
int DescrCount = cGlobalInfo.CurrentScreening.ListDescriptors.Count;
this.UpDateNumberOfCluster();
if (NumberOfClusters == 0)
{
System.Windows.Forms.MessageBox.Show("Number of cluster is null", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Hand);
return;
}
//if (FFSC.checkBoxGenerationRatio.Checked)
//{
// // first we update the descriptor
// for (int i = 0; i < this.NumberOfClusters; i++)
// GlobalInfo.CurrentScreening.ListDescriptors.AddNew(new cDescriptorType("Ratio_" + GlobalInfo.ListCellularPhenotypes[i].Name, true, 1, GlobalInfo));
//}
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Show();
int IdxProgress = 0;
int MaxProgress = 0;
#region Confusion Matrix init
cListExtendedTable LT = new cListExtendedTable();
cExtendedTable ConfusionMatrix = new cExtendedTable(cGlobalInfo.ListCellularPhenotypes.Count, cGlobalInfo.ListCellularPhenotypes.Count, 0);
ConfusionMatrix.Name = "Confusion Matrix (global)";
ConfusionMatrix.ListRowNames = new List<string>();
for (int i = 0; i < cGlobalInfo.ListCellularPhenotypes.Count; i++)
{
ConfusionMatrix.ListRowNames.Add(cGlobalInfo.ListCellularPhenotypes[i].Name + "*");
ConfusionMatrix[i].Name = cGlobalInfo.ListCellularPhenotypes[i].Name;
}
LT.Add(ConfusionMatrix);
for (int i = 0; i < cGlobalInfo.ListWellClasses.Count; i++)
{
cExtendedTable ConfusionMatrixTmp = new cExtendedTable(cGlobalInfo.ListCellularPhenotypes.Count, cGlobalInfo.ListCellularPhenotypes.Count, 0);
ConfusionMatrixTmp.Name = "Confusion Matrix - " + cGlobalInfo.ListWellClasses[i].Name;
ConfusionMatrixTmp.ListRowNames = new List<string>();
for (int j = 0; j < cGlobalInfo.ListCellularPhenotypes.Count; j++)
{
ConfusionMatrixTmp.ListRowNames.Add(cGlobalInfo.ListCellularPhenotypes[j].Name + "*");
ConfusionMatrixTmp[j].Name =cGlobalInfo.ListCellularPhenotypes[j].Name;
}
LT.Add(ConfusionMatrixTmp);
}
#endregion
cListPlates LP = PlatesSelectionPanel.GetListSelectedPlates();
foreach (cPlate CurrentPlateToProcess in LP /*GlobalInfo.CurrentScreening.ListPlatesAvailable*/)
MaxProgress += (int)CurrentPlateToProcess.ListActiveWells.Count;
ProgressWindow.progressBar.Maximum = MaxProgress;
FastVector attVals = new FastVector();
for (int i = 0; i < this.NumberOfClusters; i++)
attVals.addElement(i.ToString());
cPlate CurrentDispPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
foreach (cPlate CurrentPlateToProcess in LP/* GlobalInfo.CurrentScreening.ListPlatesAvailable*/)
{
foreach (cWell TmpWell in CurrentPlateToProcess.ListActiveWells)
{
ProgressWindow.progressBar.Value = IdxProgress++;
if (TmpWell.GetCurrentClassIdx() == -1) continue;
if (WellClassSelectionPanel.ListCheckBoxes[TmpWell.GetCurrentClassIdx()].Checked == false) continue;
DataTable FinalDataTable = new DataTable();
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
TmpWell.AssociatedPlate.DBConnection.AddWellToDataTable(TmpWell, FinalDataTable, this.GlobalInfo);
cListSingleBiologicalObjects LSBO = TmpWell.AssociatedPlate.DBConnection.GetBiologicalPhenotypes(TmpWell);
//TmpWell.AssociatedPlate.DBConnection.AddWellToDataTable(TmpWell, FinalDataTable, checkBoxIncludeWellClassAsDesc.Checked, GlobalInfo);
Instances ListInstancesTOClassify = this.CreateInstancesWithoutClass(FinalDataTable);
ListInstancesTOClassify.insertAttributeAt(new weka.core.Attribute("Class", attVals), ListInstancesTOClassify.numAttributes());
ListInstancesTOClassify.setClassIndex(ListInstancesTOClassify.numAttributes() - 1);
cExtendedList ListNewClasses = new cExtendedList();
int NumInstances = ListInstancesTOClassify.numInstances();
for (int i = 0; i < NumInstances; i++)
{
// ClassId contains the new class
Instance CurrentInst = ListInstancesTOClassify.instance(i);
double classId = this.CurrentClassifier.classifyInstance(CurrentInst);
double[] ClassConfidence = this.CurrentClassifier.distributionForInstance(CurrentInst);
LSBO[i].ClassificationConfidence = ClassConfidence[(int)classId];
ListNewClasses.Add(classId);
if (CurrentPlateToProcess == CurrentDispPlate)
{
LT[0][LSBO[i].GetAssociatedPhenotype().Idx][(int)classId]++;
if (TmpWell.GetCurrentClassIdx() >= 0)
LT[TmpWell.GetCurrentClassIdx() + 1][LSBO[i].GetAssociatedPhenotype().Idx][(int)classId]++;
}
}
ProgressWindow.richTextBoxForComment.AppendText(TmpWell.GetShortInfo().Remove(TmpWell.GetShortInfo().Length - 2) + " : " + NumInstances + " objects\n");
ProgressWindow.Refresh();
// ------------- update class within the database -----------------------------
TmpWell.AssociatedPlate.DBConnection.ChangePhenotypeClass(TmpWell, ListNewClasses);
//if (FFSC.checkBoxGenerationRatio.Checked)
//{
// List<double[]> Histo = ListNewClasses.CreateHistogram(0, ListInstancesTOClassify.numClasses(), ListInstancesTOClassify.numClasses());
// cListSignature LDesc = new cListSignature();
// for (int IdxHisto = 0; IdxHisto < Histo[1].Length - 1; IdxHisto++)
// {
// Histo[1][IdxHisto] = (100.0 * Histo[1][IdxHisto]) / (double)ListInstancesTOClassify.numInstances();
// cSignature NewDesc = new cSignature(Histo[1][IdxHisto], GlobalInfo.CurrentScreening.ListDescriptors[IdxHisto + DescrCount], GlobalInfo.CurrentScreening);
// LDesc.Add(NewDesc);
// }
// TmpWell.AddSignatures(LDesc);
//}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
}
#region Display Report
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
cViewertext VTEXT = new cViewertext();
VTEXT.SetInputData(ProgressWindow.richTextBoxForComment.Text);
VTEXT.Run();
cDesignerTab DT = new cDesignerTab();
DT.IsMultiline = false;
foreach (var item in LT)
{
cViewerTable VT = new cViewerTable();
VT.SetInputData(item);
VT.DigitNumber = 0;
VT.Run();
DT.SetInputData(VT.GetOutPut());
}
DT.Run();
cExtendedControl TextEC = DT.GetOutPut();
TextEC.Width = 0;
TextEC.Height = 0;
TextEC.Anchor = (System.Windows.Forms.AnchorStyles)(System.Windows.Forms.AnchorStyles.Top | System.Windows.Forms.AnchorStyles.Bottom
| System.Windows.Forms.AnchorStyles.Left
| System.Windows.Forms.AnchorStyles.Right);
DS.SetInputData(VTEXT.GetOutPut());
DS.SetInputData(TextEC);
DS.Run();
ProgressWindow.Close();
cDisplayToWindow CDT = new cDisplayToWindow();
CDT.SetInputData(DS.GetOutPut());
CDT.IsModal = true;
CDT.Title = "Phenotypic Classificaton Report";
CDT.Run();
CDT.Display();
#endregion
//if (IsKeepOriginalDesc == System.Windows.Forms.DialogResult.No)
//{
// // int DescNumToRemove = GlobalInfo.CurrentScreen.ListDescriptors.Count -
// for (int IdxDesc = 0; IdxDesc < DescrCount; IdxDesc++)
// GlobalInfo.CurrentScreening.ListDescriptors.RemoveDesc(GlobalInfo.CurrentScreening.ListDescriptors[0], GlobalInfo.CurrentScreening);
//}
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
cGlobalInfo.CurrentScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
//WindowFormForCellbyCellClassif.Close();
//WindowClusteringInfo.Close();
}