private void exctractSliceToolStripMenuItem_Click(object sender, EventArgs e)
{
int CurrentZ = (int)this.numericUpDownZPos.Value;
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImage NewImage = new cImage(this.Sender.AssociatedImage.Width, this.Sender.AssociatedImage.Height, 1, this.Sender.AssociatedImage.GetNumChannels());
NewImage.Name = this.Sender.AssociatedImage.Name + " [Z=" + CurrentZ + "]";
NewImage.Resolution = new _3D.cPoint3D(this.Sender.AssociatedImage.Resolution);
for (int i = 0; i < this.Sender.AssociatedImage.GetNumChannels(); i++)
{
Array.Copy(this.Sender.AssociatedImage.SingleChannelImage[i].Data, CurrentZ * this.Sender.AssociatedImage.SliceSize,
NewImage.SingleChannelImage[i].Data, 0,
NewImage.ImageSize);
}
NewView.SetInputData(NewImage);
NewView.Run();
}
private void ToolStripMenuItem_GeometricalCrop(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
Point Bottom = new Point(mRect.Left, mRect.Top);
Point ConvertedBottom = ConvertPanelCoordToImageCoord(Bottom);
Point Top = new Point(mRect.Right, mRect.Bottom);
Point ConvertedTop = ConvertPanelCoordToImageCoord(Top);
cImage CroppedImage = this.AssociatedImage.Crop(new cPoint3D(ConvertedBottom.X, ConvertedBottom.Y, 0), new cPoint3D(ConvertedTop.X, ConvertedTop.Y, 0));
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.SetInputData(CroppedImage);
NewView.Run();
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
/// <summary>
/// Display the information window related to the selected well
/// </summary>
private void ToolStripMenuItem_Image(object sender, EventArgs e)
{
int Field = (int)cGlobalInfo.OptionsWindow.numericUpDownDefaultField.Value;
cDisplaySingleImage IV = new cDisplaySingleImage();
cGetImageFromWells IFW = new cGetImageFromWells();
IFW.SetInputData(new cListWells(this));
IFW.ListProperties.FindByName("Field").SetNewValue((int)0);
if(cGlobalInfo.OptionsWindow.numericUpDownImageAccessNumberOfFields.Value>1)
IFW.ListProperties.FindByName("Field").IsGUIforValue = true;
if (IFW.Run().IsSucceed == false)
{
return;
}
IV.SetInputData(IFW.GetOutPut());
IV.Title = this.GetShortInfo() + " - Field: " + ((int)(IFW.ListProperties.FindByName("Field").GetValue()));
IV.IsDisplayScale = true;
IV.IsUseSavedDefaultDisplayProperties = true;
IV.Run();
}
private void ToolStripMenuItem_DisplayImage(object sender, EventArgs e)
{
List<cImageMetaInfo> ListInfo = cGlobalInfo.ImageAccessor.GetImageInfo(this);
cImage Image = new cImage(ListInfo);
this.BD_BoxMax.Z = this.BD_BoxMin.Z = 0;
// this.BD_BoxMin.Y = Image.Height - this.BD_BoxMin.Y;
// this.BD_BoxMax.Y = Image.Height - this.BD_BoxMax.Y;
if (this.BD_BoxMin.Y > this.BD_BoxMax.Y)
{
double Tmp = this.BD_BoxMin.Y;
this.BD_BoxMin.Y = this.BD_BoxMax.Y;
this.BD_BoxMax.Y = Tmp;
}
cImage CroppedImaged = Image.Crop(this.BD_BoxMin, this.BD_BoxMax);
cDisplaySingleImage IV = new cDisplaySingleImage();
IV.IsUseSavedDefaultDisplayProperties = true;
IV.DefaultZoom = 100;
IV.Title = "[Plate] " + this.AssociatedWell.AssociatedPlate.GetName() + " - [Well] " + this.AssociatedWell.GetPos() + " - [Field] " + this.ImageField + " - " + this.CellularPhenotypeType.Name;
IV.SetInputData(CroppedImaged);
IV.Run();
}
public void CurrentPanel_DragDrop(object sender, DragEventArgs e)
{
cImage SourceImage = (cImage)e.Data.GetData(typeof(cImage));
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImage NewIm = new cImage(SourceImage.Width, SourceImage.Height, SourceImage.Depth, SourceImage.GetNumChannels() + this.AssociatedImage.GetNumChannels());
int IdxChannel = 0;
for (int i = 0; i < SourceImage.GetNumChannels(); i++)
Array.Copy(SourceImage.SingleChannelImage[i].Data, NewIm.SingleChannelImage[IdxChannel++].Data, NewIm.SliceSize);
for (int i = 0; i < this.AssociatedImage.GetNumChannels(); i++)
Array.Copy(this.AssociatedImage.SingleChannelImage[i].Data, NewIm.SingleChannelImage[IdxChannel++].Data, NewIm.SliceSize);
NewView.SetInputData(NewIm);
NewView.Run();
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText("DragNDrop: from " + SourceImage.Name + " to " + this.AssociatedImage.Name + "\n");
}
private void ToolStripMenuItem_SplitByChannels(object sender, EventArgs e)
{
for (int i = 0; i < this.AssociatedImage.GetNumChannels(); i++)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImage NewImage = new cImage(this.AssociatedImage.Width, this.AssociatedImage.Height, this.AssociatedImage.Depth, 1);
NewImage.Name = this.AssociatedImage.Name + " [" + this.AssociatedImage.SingleChannelImage[i].Name + "]";
NewImage.Resolution = new cPoint3D(this.AssociatedImage.Resolution);
Array.Copy(this.AssociatedImage.SingleChannelImage[i].Data, NewImage.SingleChannelImage[0].Data, NewImage.ImageSize);
NewView.SetInputData(NewImage);
NewView.Run();
}
}
private void ToolStripMenuItem_SegmentationMeanShift(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageSegmentationMeanShift MS = new cImageSegmentationMeanShift();
MS.SetInputData(this.AssociatedImage);
//ME.IsInvert = true;
MS.Run();
NewView.SetInputData(MS.GetOutPut());
NewView.Run();
}
private void ToolStripMenuItem_Morpho_Erode(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageMorphoErode ME = new cImageMorphoErode();
ME.SetInputData(this.AssociatedImage);
ME.Iterations = 3;
ME.Run();
NewView.SetInputData(ME.GetOutPut());
NewView.Run();
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_Edges_Canny(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageFilterCanny FC = new cImageFilterCanny();
FC.SetInputData(this.AssociatedImage);
FC.GreyThreshold = 10;
FC.GreyThresholdLinkin = 60;
FC.Run();
NewView.SetInputData(FC.GetOutPut());
NewView.Run();
}
private void ToolStripMenuItem_BitmapToImage(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
Bitmap BMP = this.GetBitmap();
if (BMP == null) return;
cImage NewImage = new cImage(BMP.Width, BMP.Height, 1, 3);
NewImage.Name = "RGB_Bitmap(" + this.AssociatedImage.Name + ")";
NewImage.Resolution = new cPoint3D(this.AssociatedImage.Resolution);
for (int j = 0; j < BMP.Height; j++)
{
for (int i = 0; i < BMP.Width; i++)
{
Color C = BMP.GetPixel(i, j);
NewImage.SingleChannelImage[0].Data[i + j * NewImage.Width] = C.R;
NewImage.SingleChannelImage[1].Data[i + j * NewImage.Width] = C.G;
NewImage.SingleChannelImage[2].Data[i + j * NewImage.Width] = C.B;
}
}
NewView.SetInputData(NewImage);
NewView.Run();
}
private void ToolStripMenuItem_AddNoise(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageAddNoise AN = new cImageAddNoise();
AN.SetInputData(this.AssociatedImage);
AN.DistributionType = Classes.Base_Classes.Data.eRandDistributionType.GAUSSIAN;
AN.Mean = 0;
AN.Stdev = 10;
//FLM.DistanceType = Emgu.CV.CvEnum.DIST_TYPE.CV_DIST_L2;
AN.Run();
NewView.SetInputData(AN.GetOutPut());
NewView.Run();
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_DisplayAsImage(object sender, EventArgs e)
{
cConvertToImage CI = new cConvertToImage();
CI.SetInputData(this.Input);
CI.Run();
cDisplaySingleImage DSI = new cDisplaySingleImage();
DSI.SetInputData(CI.GetOutPut());
DSI.Run();
}
public cFeedBackMessage Run()
{
base.Start();
object _firstValue = base.ListProperties.FindByName("Width");
int Width = 0;
if (_firstValue == null)
{
base.GenerateError("-Width- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
Width = (int)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Width- Size cast didn't work");
return base.FeedBackMessage;
}
_firstValue = base.ListProperties.FindByName("Height");
int Height = 0;
if (_firstValue == null)
{
base.GenerateError("-Height- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
Height = (int)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Height- Size cast didn't work");
return base.FeedBackMessage;
}
_firstValue = base.ListProperties.FindByName("Depth");
int Depth = 0;
if (_firstValue == null)
{
base.GenerateError("-Depth- not found !");
return base.FeedBackMessage;
}
try
{
cProperty TmpProp = (cProperty)_firstValue;
Depth = (int)TmpProp.GetValue();
}
catch (Exception)
{
base.GenerateError("-Depth- Size cast didn't work");
return base.FeedBackMessage;
}
cImage NewImage = new cImage(Width, Height, Depth, 1);
NewImage.Name = "Image [" + Width + ", " + Height + ", " + Depth + "]";
cDisplaySingleImage DSI = new cDisplaySingleImage();
DSI.SetInputData(NewImage);
DSI.Run();
base.End();
return FeedBackMessage;
}
private void ToolStripMenuItem_DisplayImages(object sender, EventArgs e)
{
//if (cWell.cGlobalInfo.ImageAccessor.ImagingPlatformType == HCSAnalyzer.Classes.General_Types.eImagingPlatformType.OPERETTA) return;
cGlobalInfo.ImageAccessor.Field = 1;// (int)this.numericUpDownField.Value;
//string FileName = cWell.cGlobalInfo.ImageAccessor.GetImageFileName(this);
foreach (cWell item in this.ListActiveWells)
{
List<cImageMetaInfo> ListMetaInfo = cGlobalInfo.ImageAccessor.GetImageInfo(item);
cImage Image = new cImage(ListMetaInfo);
Image.Name = "Image [" + item.GetShortInfo() + "] - Field [" + cGlobalInfo.ImageAccessor.Field + "]";
cImage FinaleImage = Image.Crop(new cPoint3D(400, 400, 0), new cPoint3D(800 + 400, 800 + 400, 0));
//cImageGeometricResize IR = new cImageGeometricResize();
//IR.SetInputData(Image);
//IR.InterpolationType = Emgu.CV.CvEnum.INTER.CV_INTER_LINEAR;
//IR.ListProperties.UpdateValueByName("Scale", (double)0.25);
//IR.Run();
//cImage FinaleImage = IR.GetOutPut();
//FinaleImage.Name = "Image [" + item.GetShortInfo()+"] - Field ["+ cWell.cGlobalInfo.ImageAccessor.Field + "]";
cDisplaySingleImage IV = new cDisplaySingleImage();
IV.SetInputData(FinaleImage);
IV.Run();
}
//cImage IM = new cImage(this.Info);
//if (IM == null) return;
//cImageViewer IV = new cImageViewer();
//IV.SetImage(IM);
//IV.Show();
//cViewerImage3D VI3D = new cViewerImage3D();
//foreach (cWell item in this.ListActiveWells)
//{
// vtkJPEGReader JPEGReader = vtkJPEGReader.New();
// JPEGReader.SetFileName(item.Info);
// JPEGReader.Update();
// vtkImageData ID0 = JPEGReader.GetOutput();
// VI3D.SetInputData(ID0);
//}
//// cVolume3D Volume3D0 = new cVolume3D(ID0, new HCSAnalyzer.Classes._3D.cPoint3D(0, 0, 0));
//VI3D.Run();
//cDisplayToWindow DTW = new cDisplayToWindow();
//DTW.SetInputData(VI3D.GetOutPut());
//DTW.Run();
//DTW.Display();
}
private void ToolStripMenuItem_GeometricalFlip(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageGeometricFlip GF = new cImageGeometricFlip();
GF.SetInputData(this.AssociatedImage);
GF.ListProperties.FindByName("Horizontal").SetNewValue((bool)true);
GF.ListProperties.FindByName("Horizontal").IsGUIforValue = true;
cFeedBackMessage FeedBackMessage = GF.Run();
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(FeedBackMessage.GetFullFeedBack());
if (FeedBackMessage.IsSucceed == false) return;
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.SetInputData(GF.GetOutPut());
NewView.Run();
//NewView.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_GeometricalResize(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageGeometricResize GR = new cImageGeometricResize();
GR.SetInputData(this.AssociatedImage);
GR.SliceIndex = (int)ZNavigator.numericUpDownZPos.Value;
GR.InterpolationType = Emgu.CV.CvEnum.Inter.Linear;
GR.ListProperties.FindByName("Scale").SetNewValue((double)0.5);
GR.ListProperties.FindByName("Scale").IsGUIforValue = true;
GR.ListProperties.FindByName("Maximum Width").SetNewValue((int)0);
GR.ListProperties.FindByName("Maximum Width").IsGUIforValue = true;
cFeedBackMessage FeedBackMessage = GR.Run();
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(FeedBackMessage.GetFullFeedBack());
if (FeedBackMessage.IsSucceed == false) return;
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.SetInputData(GR.GetOutPut());
NewView.Run();
//NewView.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_Edges_Laplace(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageFilterLaplace FL = new cImageFilterLaplace();
FL.SetInputData(this.AssociatedImage);
FL.Aperture = 3;
FL.Run();
NewView.SetInputData(FL.GetOutPut());
NewView.Run();
}
private void ToolStripMenuItem_SegmentationKMeans(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageSegmentationKMeans KM = new cImageSegmentationKMeans();
KM.SetInputData(this.AssociatedImage);
//ME.IsInvert = true;
// KM.ListChannelsToBeProcessed = this.AssociatedImage.GetListChannels();
KM.ListProperties.FindByName("Number of clusters").SetNewValue((int)3);
KM.ListProperties.FindByName("Number of clusters").IsGUIforValue = true;
KM.Run();
NewView.SetInputData(KM.GetOutPut());
NewView.Run();
}
private void ToolStripMenuItem_Edges_Sobel(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageFilterSobel FS = new cImageFilterSobel();
FS.SetInputData(this.AssociatedImage);
FS.Aperture = 3;
FS.X_Order = 1;
FS.Y_Order = 1;
FS.Run();
NewView.SetInputData(FS.GetOutPut());
NewView.Run();
}
private void ToolStripMenuItem_SegmentationThreshold(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageSegmentationThreshold ME = new cImageSegmentationThreshold();
ME.SetInputData(this.AssociatedImage);
ME.ListProperties.FindByName("Threshold").SetNewValue((double)100);
ME.ListProperties.FindByName("Threshold").IsGUIforValue = true;
ME.IsInvert = true;
ME.Run();
NewView.SetInputData(ME.GetOutPut());
NewView.Run();
}
private void ToolStripMenuItem_Filtering_GaussianConvolution(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
ImageAnalysisFiltering.cImageFilterGaussianConvolution GaussianBlur = new ImageAnalysisFiltering.cImageFilterGaussianConvolution();
GaussianBlur.SetInputData(this.AssociatedImage);
GaussianBlur.ListProperties.FindByName("Kernel Size").SetNewValue((int)3);
GaussianBlur.ListProperties.FindByName("Kernel Size").IsGUIforValue = true;
cFeedBackMessage FeedBackMessage = GaussianBlur.Run();
if (FeedBackMessage.IsSucceed == false) return;
NewView.SetInputData(GaussianBlur.GetOutPut());
NewView.Run();
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
}
private void ToolStripMenuItem_TransformsDistanceMap(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageDistanceMap DM = new cImageDistanceMap();
DM.SetInputData(this.AssociatedImage);
DM.DistanceType = Emgu.CV.CvEnum.DistType.L2;
DM.Run();
NewView.SetInputData(DM.GetOutPut());
NewView.Run();
}
private void ToolStripMenuItem_Filtering_Median(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageFilterMedian FM = new cImageFilterMedian();
FM.SetInputData(this.AssociatedImage);
FM.ListProperties.FindByName("Kernel Size").SetNewValue((int)5);
FM.ListProperties.FindByName("Kernel Size").IsGUIforValue = true;
cFeedBackMessage FeedBackMessage = FM.Run();
//GlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(FeedBackMessage.GetFullFeedBack());
if (FeedBackMessage.IsSucceed == false) return;
NewView.SetInputData(FM.GetOutPut());
NewView.Run();
cImageDisplayProperties TmpProp = new cImageDisplayProperties();
TmpProp.UpdateFromLUTManager(this.LUTManager);
NewView.MyImageViewer.IP.LUTManager.UpdateFromDisplayProperties(TmpProp);
//GlobalInfo.DisplayViewer(NewView);
}
private void ToolStripMenuItem_FindContours(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageFindContours FC = new cImageFindContours();
FC.SetInputData(this.AssociatedImage);
FC.Run();
NewView.SetInputData(FC.GetOutPut());
NewView.Run();
}
private void ToolStripMenuItem_FindLocalMax(object sender, EventArgs e)
{
cDisplaySingleImage NewView = new cDisplaySingleImage();
cImageFindLocalMax FLM = new cImageFindLocalMax();
FLM.SetInputData(this.AssociatedImage);
//FLM.DistanceType = Emgu.CV.CvEnum.DIST_TYPE.CV_DIST_L2;
FLM.Run();
NewView.SetInputData(FLM.GetOutPut());
NewView.Run();
}
private void toolStripMenuItemLoadImage_Click(object sender, EventArgs e)
{
OpenFileDialog CurrOpenFileDialog = new OpenFileDialog();
CurrOpenFileDialog.Filter = "TIF Files (*.tif)|*.tif|JPEG Files (*.jpeg)|*.jpeg|PNG Files (*.png)|*.png|JPG Files (*.jpg)|*.jpg|GIF Files (*.gif)|*.gif|BMP Files (*.bmp)|*.bmp|Cellomics Files (*.c01)|*.c01|Zeiss LSM Files (*.lsm)|*.lsm|MetaMorph Stack STK Files (*.stk)|*.stk";
//CurrOpenFileDialog.Filter = "Tif files (*.tif)|*.tif";
DialogResult Res = CurrOpenFileDialog.ShowDialog();
if (Res != DialogResult.OK) return;
cImage NewIm = new cImage(CurrOpenFileDialog/*CurrOpenFileDialog.FileName*/);
cDisplaySingleImage NewView = new cDisplaySingleImage();
NewView.SetInputData(NewIm);
NewView.Run();
//if((NewIm.Width>500)||(NewIm.Height>500))
// NewView.ConstraintImageSize = new Point(500, 500);
//GlobalInfo.DisplayViewer(NewView);
return;
}
private void buttonProcess_Click(object sender, EventArgs e)
{
ImageWidth = (int)numericUpDownMapWidth.Value;
ImageHeight = (int)numericUpDownMapHeight.Value;
if (this.radioButton2D.Checked) ImageDepth = 1;
else
ImageDepth = (int)numericUpDownMapDepth.Value;
//GlobalInfo.ListCellularPhenotypes[(int)MachineLearning.Classes[j]]
cImageDrawKernel GK = new cImageDrawKernel();
GK.sigma_x = (int)numericUpDownKernelSize.Value;
GK.sigma_y = (int)numericUpDownKernelSize.Value;
GK.sigma_z = (int)numericUpDownKernelSize.Value;
GK.Run();
cImage K = GK.GetOutPut();
if (Parent.comboBoxAxeY.SelectedIndex == -1) return;
if (Parent.comboBoxVolume.SelectedIndex == -1) return;
cExtendedList ListVolumes = new cExtendedList();
ListX.Clear();
ListY.Clear();
ListZ.Clear();
cExtendedTable TableForDataToBeAnalyzed = Parent.GetActiveSignatures(false);
for (int j = 0; j < TableForDataToBeAnalyzed[0].Count; j++)
{
ListX.Add(TableForDataToBeAnalyzed[Parent.comboBoxAxeX.SelectedIndex][j]);
ListY.Add(TableForDataToBeAnalyzed[Parent.comboBoxAxeY.SelectedIndex][j]);
}
//MaxX = ListX.Max();
//MinX = ListX.Min();
//MaxY = ListY.Max();
//MinY = ListY.Min();
MaxX = Parent.chartForPoints.ChartAreas[0].AxisX.Maximum;
MinX = Parent.chartForPoints.ChartAreas[0].AxisX.Minimum;
MaxY = Parent.chartForPoints.ChartAreas[0].AxisY.Maximum;
MinY = Parent.chartForPoints.ChartAreas[0].AxisY.Minimum;
//MaxY = Parent.MaxY;
//MinY = Parent.MinY;
if (this.radioButton3D.Checked)
{
for (int j = 0; j < TableForDataToBeAnalyzed[0].Count; j++)
{
ListZ.Add(TableForDataToBeAnalyzed[Parent.comboBoxVolume.SelectedIndex][j]);
}
MaxZ = ListZ.Max();
MinZ = ListZ.Min();
}
DensityMaps = new cImage(ImageWidth, ImageHeight, ImageDepth, cGlobalInfo.ListCellularPhenotypes.Count);
int[] ClassPopulations = new int[cGlobalInfo.ListCellularPhenotypes.Count];
if (this.radioButton3D.Checked)
{
int Idx = 0;
for (int j = 0; j < Parent.InputTable[0].Count; j++)
{
if (Parent.PanelPhenotypeSelection.GetListSelectedClass()[(int)Parent.MachineLearning.Classes[j]])
{
double TmpValueX = (ImageWidth * (ListX[Idx] - MinX)) / (MaxX - MinX) - K.Width / 2;
double TmpValueY = ImageHeight - (ImageHeight * (ListY[Idx] - MinY)) / (MaxY - MinY) - K.Height / 2;
double TmpValueZ = ImageDepth - (ImageDepth * (ListZ[Idx] - MinZ)) / (MaxZ - MinZ) - K.Depth / 2;
DensityMaps.AddInto(K, (int)TmpValueX, (int)TmpValueY, (int)TmpValueZ, (int)Parent.MachineLearning.Classes[j]);
ClassPopulations[(int)Parent.MachineLearning.Classes[j]]++;
Idx++;
}
}
}
else
{
int Idx = 0;
for (int j = 0; j < Parent.InputTable[0].Count; j++)
{
if (Parent.PanelPhenotypeSelection.GetListSelectedClass()[(int)Parent.MachineLearning.Classes[j]])
{
double TmpValueX = (ImageWidth * (ListX[Idx] - MinX)) / (MaxX - MinX) - K.Width / 2;
double TmpValueY = ImageHeight - (ImageHeight * (ListY[Idx] - MinY)) / (MaxY - MinY) - K.Height / 2;
DensityMaps.AddInto(K, (int)TmpValueX, (int)TmpValueY, 0, (int)Parent.MachineLearning.Classes[j]);
ClassPopulations[(int)Parent.MachineLearning.Classes[j]]++;
Idx++;
}
}
}
cListExtendedTable TablesForDensity = new cListExtendedTable(DensityMaps);
for (int idxChannel = 0; idxChannel < DensityMaps.GetNumChannels(); idxChannel++)
{
DensityMaps.SingleChannelImage[idxChannel].Name = cGlobalInfo.ListCellularPhenotypes[idxChannel].Name;
float Sum = 1;
if (checkBoxNormalized.Checked)
{
Sum = (float)TablesForDensity[idxChannel].Sum();
if (Sum <= 0.0) continue;
for (int i = 0; i < DensityMaps.SingleChannelImage[idxChannel].Data.Length; i++)
{
//if (ClassPopulations[idxChannel] > 0)
DensityMaps.SingleChannelImage[idxChannel].Data[i] = (100 * DensityMaps.SingleChannelImage[idxChannel].Data[i]) / Sum;
}
}
else
{
for (int i = 0; i < DensityMaps.SingleChannelImage[idxChannel].Data.Length; i++)
{
// if (ClassPopulations[idxChannel] > 0)
DensityMaps.SingleChannelImage[idxChannel].Data[i] = DensityMaps.SingleChannelImage[idxChannel].Data[i];
}
}
}
cDisplaySingleImage IV = new cDisplaySingleImage();
DensityMaps.Name = "Density Maps. K["+ this.numericUpDownKernelSize.Value +"]";
if (this.checkBoxModifyColors.Checked)
IV.ListLinearMaxColor = new List<Color>();
int RealIdxChannel = 0;
for (int idxChannel = 0; idxChannel < ClassPopulations.Length; idxChannel++)
{
if (ClassPopulations[idxChannel] == 0)
DensityMaps.SingleChannelImage.RemoveAt(RealIdxChannel--);
else
{
if (this.checkBoxModifyColors.Checked)
IV.ListLinearMaxColor.Add(cGlobalInfo.ListCellularPhenotypes[idxChannel].ColourForDisplay);
}
RealIdxChannel++;
}
IV.SetInputData(DensityMaps);
IV.Run();
this.buttonApply.Enabled = true;
}
