public cBuildDensityMap()
{
Title = "Build Density Map";
cPropertyType CPT = new cPropertyType("Kernel size", eDataType.INTEGER);
CPT.Min = 1;
cProperty Prop1 = new cProperty(CPT, null);
Prop1.Info = "Size of the kernel";
Prop1.SetNewValue((int)10);
base.ListProperties.Add(Prop1);
cPropertyType CPT2 = new cPropertyType("Image width", eDataType.INTEGER);
CPT2.Min = 1;
cProperty Prop2 = new cProperty(CPT2, null);
Prop2.Info = "Width of the density map image";
Prop2.SetNewValue((int)256);
base.ListProperties.Add(Prop2);
cPropertyType CPT3 = new cPropertyType("Image height", eDataType.INTEGER);
CPT3.Min = 1;
cProperty Prop3 = new cProperty(CPT3, null);
Prop3.Info = "Height of the density map image";
Prop3.SetNewValue((int)256);
base.ListProperties.Add(Prop3);
cPropertyType CPT4 = new cPropertyType("Image depth", eDataType.INTEGER);
CPT4.Min = 1;
cProperty Prop4 = new cProperty(CPT4, null);
Prop4.Info = "Depth of the density map image";
Prop4.SetNewValue((int)256);
base.ListProperties.Add(Prop4);
}
public cImageGeometricFlip()
{
this.Title = "Flip ";
cProperty Prop1 = new cProperty(new cPropertyType("Horizontal", eDataType.BOOL), null);
Prop1.Info = "Horizontal Flip?";
Prop1.SetNewValue((bool)true);
base.ListProperties.Add(Prop1);
}
public cImageSegmentationThreshold()
{
this.Title = "Threshold";
cProperty Prop1 = new cProperty(new cPropertyType("Threshold", eDataType.DOUBLE), null);
Prop1.Info = "Intensity threshold";
Prop1.SetNewValue((double)100);
base.ListProperties.Add(Prop1);
}
public cImageFilterMedian()
{
this.Title = "Median Filtering";
cProperty Prop1 = new cProperty(new cPropertyType("Kernel Size", eDataType.INTEGER), null);
Prop1.Info = "Median Kernel size";
Prop1.SetNewValue((int)3);
base.ListProperties.Add(Prop1);
}
public cGetImageFromWells()
{
this.Title = "Get Wells List Image";
cPropertyType PT = new cPropertyType("Field", eDataType.INTEGER);
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Field";
Prop1.SetNewValue((int)0);
base.ListProperties.Add(Prop1);
}
public cGetListWellValues()
{
this.Title = "Get Well Values List";
cPropertyType PT = new cPropertyType("Include Images?", eDataType.BOOL);
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Include Images Within the Data (if avalaible).";
Prop1.SetNewValue((bool)false);
base.ListProperties.Add(Prop1);
}
public cTableToHTML()
{
base.Title = "Table to HTML";
base.Info = "Write a table in a HTML file (if Tags are images, they are saved as well).";
cPropertyType PT = new cPropertyType("Open HTML File ?", eDataType.BOOL);
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Open Web browser to display the generated HTML file";
Prop1.SetNewValue((bool)true);
base.ListProperties.Add(Prop1);
}
// public double StdDev = 3.0;
public cImageFilterGaussianConvolution()
{
this.Title = "Gaussian Convolution";
cPropertyType PT = new cPropertyType("Kernel Size", eDataType.INTEGER);
PT.IntType = eIntegerType.ODD;
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Gaussian kernel size";
Prop1.SetNewValue((int)3);
base.ListProperties.Add(Prop1);
}
public cImageGeometricBinning()
{
this.Title = "Binning";
cProperty Prop2 = new cProperty(new cPropertyType("Binning", eDataType.INTEGER),null);
Prop2.PropertyType.Min = 2;
Prop2.PropertyType.IntType = eIntegerType.EVEN;
Prop2.Info = "Define the new image binning.";
Prop2.SetNewValue((int)2);
base.ListProperties.Add(Prop2);
}
public cViewerStackedHistogram()
{
this.Title = "Stacked Histogram Viewer";
cPropertyType PT = new cPropertyType("Bin Number", eDataType.INTEGER);
PT.Min = -1;
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Number of bins (-1 <=> automated)";
Prop1.SetNewValue((int)100);
base.ListProperties.Add(Prop1);
}
public cClustering()
{
base.Title = "Clustering";
base.Info = base.Info = @"Multivariate Clustering";
cPropertyType PT1 = new cPropertyType("Number of Clusters", eDataType.INTEGER);
PT1.Min = -1;
cProperty Prop1 = new cProperty(PT1, null);
Prop1.Info = "Define the request number of clusters (-1 <=> automated)";
Prop1.SetNewValue((int)3);
base.ListProperties.Add(Prop1);
}
// public double Scale = 0.5;
public cImageGeometricResize()
{
this.Title = "Resize ";
cProperty Prop1 = new cProperty(new cPropertyType("Scale", eDataType.DOUBLE), null);
Prop1.Info = "Resizing scale";
Prop1.SetNewValue((double)0.5);
base.ListProperties.Add(Prop1);
cProperty Prop2 = new cProperty(new cPropertyType("Maximum Width", eDataType.INTEGER),null);
Prop2.PropertyType.Min = 0;
Prop2.Info = "Define the maximum width of the image. If set to 0, then unlimited";
Prop2.SetNewValue((int)0);
base.ListProperties.Add(Prop2);
}
public cvtkPiecewiseFunctionBuilder()
{
base.Title = "vtkPiecewiseFunction builder";
cPropertyType PT = new cPropertyType("Max. Opacity", eDataType.DOUBLE);
PT.Max = 1;
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Maximum Opacity";
Prop1.SetNewValue((double)0.1);
base.ListProperties.Add(Prop1);
cPropertyType PT1 = new cPropertyType("Min. Opacity", eDataType.DOUBLE);
PT1.Max = 1;
cProperty Prop2 = new cProperty(PT1, null);
Prop2.Info = "Minimum Opacity";
Prop2.SetNewValue((double)0.1);
base.ListProperties.Add(Prop2);
}
public cDisplayNewImage()
{
this.Title = "Generate Image";
cProperty PropWidth = new cProperty(new cPropertyType("Width", eDataType.INTEGER), null);
PropWidth.Info = "Image Width";
PropWidth.SetNewValue((int)256);
base.ListProperties.Add(PropWidth);
cProperty PropHeight = new cProperty(new cPropertyType("Height", eDataType.INTEGER), null);
PropHeight.Info = "Image Height";
PropHeight.SetNewValue((int)256);
base.ListProperties.Add(PropHeight);
cProperty PropDepth = new cProperty(new cPropertyType("Depth", eDataType.INTEGER), null);
PropDepth.Info = "Image Depth";
PropDepth.SetNewValue((int)1);
base.ListProperties.Add(PropDepth);
}
public cDisplayListWell3DDRC()
{
this.Title = "List Wells 3D Plot";
cPropertyType PTDesc1 = new cPropertyType("Desc. 1", eDataType.STRING);
PTDesc1.ListPotentialString = cGlobalInfo.CurrentScreening.ListDescriptors.GetListNames();
cProperty PropDesc1 = new cProperty(PTDesc1, null);
cPropertyType PTDesc2 = new cPropertyType("Desc. 2", eDataType.STRING);
PTDesc2.ListPotentialString = cGlobalInfo.CurrentScreening.ListDescriptors.GetListNames();
cProperty PropDesc2 = new cProperty(PTDesc2, null);
cPropertyType PTDesc3 = new cPropertyType("Desc. 3", eDataType.STRING);
PTDesc3.ListPotentialString = cGlobalInfo.CurrentScreening.ListDescriptors.GetListNames();
cProperty PropDesc3 = new cProperty(PTDesc3, null);
PropDesc1.Info = "Specify the X axis associated descriptor.";
base.ListProperties.Add(PropDesc1);
PropDesc2.Info = "Specify the Y axis associated descriptor.";
base.ListProperties.Add(PropDesc2);
PropDesc3.Info = "Specify the Z axis associated descriptor.";
base.ListProperties.Add(PropDesc3);
cPropertyType PT = new cPropertyType("Normalized ?", eDataType.BOOL);
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Perform Min-Max normalization of the data.";
Prop1.SetNewValue((bool)false);
base.ListProperties.Add(Prop1);
cPropertyType PT2 = new cPropertyType("Draw Axis ?", eDataType.BOOL);
cProperty Prop2 = new cProperty(PT2, null);
Prop2.Info = "Draw data associated axis";
Prop2.SetNewValue((bool)true);
base.ListProperties.Add(Prop2);
cPropertyType PT3 = new cPropertyType("Link Points ?", eDataType.BOOL);
cProperty Prop3 = new cProperty(PT3, null);
Prop3.Info = "Draw lines sequentialy between the points";
Prop3.SetNewValue((bool)true);
base.ListProperties.Add(Prop3);
}
public c3DObjectScatterPoints()
{
Title = "3D Scatter Points Graph";
cPropertyType PT = new cPropertyType("Normalized ?", eDataType.BOOL);
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Perform Min-Max normalization of the data.";
Prop1.SetNewValue((bool)false);
base.ListProperties.Add(Prop1);
cPropertyType PT2 = new cPropertyType("Draw Axis ?", eDataType.BOOL);
cProperty Prop2 = new cProperty(PT2, null);
Prop2.Info = "Draw data associated axis";
Prop2.SetNewValue((bool)true);
base.ListProperties.Add(Prop2);
cPropertyType PT3 = new cPropertyType("Link Points ?", eDataType.BOOL);
cProperty Prop3 = new cProperty(PT3, null);
Prop3.Info = "Draw lines sequentialy between the points";
Prop3.SetNewValue((bool)true);
base.ListProperties.Add(Prop3);
}
public c3DObjectMeshFromImage()
{
Title = "3D mesh from image";
cPropertyType PT = new cPropertyType("Thresold", eDataType.DOUBLE);
cProperty Prop1 = new cProperty(PT, null);
Prop1.Info = "Threshold value for binarization";
Prop1.SetNewValue((double)0.5);
base.ListProperties.Add(Prop1);
cPropertyType PT2 = new cPropertyType("Split objects ?", eDataType.BOOL);
cProperty Prop2 = new cProperty(PT2, null);
Prop2.Info = "Split objects during the segmentation process";
Prop2.SetNewValue((bool)true);
base.ListProperties.Add(Prop2);
//cPropertyType PT3 = new cPropertyType("Link Points ?", eDataType.BOOL);
//cProperty Prop3 = new cProperty(PT3, null);
//Prop3.Info = "Draw lines sequentialy between the points";
//Prop3.SetNewValue((bool)true);
//base.ListProperties.Add(Prop3);
}
private void buttonOk_Click(object sender, EventArgs e)
{
if ((this.panelMainFilterDesc.Controls.Count == 0) && (this.panelMainFilterProp.Controls.Count == 0)) return;
int HitClass = HitClassPanel.GetListIndexSelectedClass()[0];
int NonHitClass = NonHitClassPanel.GetListIndexSelectedClass()[0];
// parse the plates
foreach (var TmpPlate in PlatesSelectionPanel.GetListSelectedPlates())
{
// check if the class has to be processed
cListWells TmpListWell = TmpPlate.ListWells.Filter(WellClassSelectionPanel.GetListSelectedClassTypes());
foreach (var TmpWell in TmpListWell)
{
bool IsHit = false;
#region filter the descriptors
// get the value associated to the selected descriptor
int IDxPanel = 0;
foreach (var TmpFilter in this.panelMainFilterDesc.Controls)
{
double Value = TmpWell.GetAverageValue(cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorByName(this.ListFormForPanelFilterDescHits[IDxPanel].comboBoxForDescName.Text));
double ValueTobeComparedTo = 0;
if (this.ListFormForPanelFilterDescHits[IDxPanel].radioButtonManual.Checked)
ValueTobeComparedTo = (double)this.ListFormForPanelFilterDescHits[IDxPanel].numericUpDownManualValue.Value;
else
ValueTobeComparedTo = (double)this.ListFormForPanelFilterDescHits[IDxPanel].numericUpDownZScoreValue.Value;
if (this.ListFormForPanelFilterDescHits[IDxPanel].comboBoxComparison.Text == ">")
{
if (Value > ValueTobeComparedTo) IsHit = true;
else
{
IsHit = false;
TmpWell.SetClass(NonHitClass);
break;
}
}
else if (this.ListFormForPanelFilterDescHits[IDxPanel].comboBoxComparison.Text == "<")
{
if (Value > ValueTobeComparedTo) IsHit = true;
else
{
IsHit = false;
TmpWell.SetClass(NonHitClass);
break;
}
}
else if (this.ListFormForPanelFilterDescHits[IDxPanel].comboBoxComparison.Text == ">=")
{
if (Value >= ValueTobeComparedTo) IsHit = true;
else
{
IsHit = false;
TmpWell.SetClass(NonHitClass);
break;
}
}
else if (this.ListFormForPanelFilterDescHits[IDxPanel].comboBoxComparison.Text == "<=")
{
if (Value <= ValueTobeComparedTo) IsHit = true;
else
{
IsHit = false;
TmpWell.SetClass(NonHitClass);
break;
}
}
else if (this.ListFormForPanelFilterDescHits[IDxPanel].comboBoxComparison.Text == "=")
{
if (Value == ValueTobeComparedTo) IsHit = true;
else
{
IsHit = false;
TmpWell.SetClass(NonHitClass);
break;
}
}
else if (this.ListFormForPanelFilterDescHits[IDxPanel].comboBoxComparison.Text == "!=")
{
if (Value != ValueTobeComparedTo) IsHit = true;
else
{
IsHit = false;
break;
}
}
IDxPanel++;
}
#endregion
// if (!IsHit) continue;
#region Filter the properties
// get the value associated to the selected descriptor
IDxPanel = 0;// this.ListFormForPanelFilterPropertyHits.Count - 1;
foreach (var TmpFilter in this.panelMainFilterProp.Controls)
{
cProperty ObjValue = TmpWell.ListProperties.FindPropertyByName(this.ListFormForPanelFilterPropertyHits[IDxPanel].comboBoxForPropertyName.Text);
if (ObjValue == null) continue;
eComparison Comparison = eComparison.E;
switch (this.ListFormForPanelFilterPropertyHits[IDxPanel].comboBoxPropertyComparison.Text)
{
case ">":
Comparison = eComparison.HT; break;
case "<":
Comparison = eComparison.LT; break;
case ">=":
Comparison = eComparison.HET; break;
case "<=":
Comparison = eComparison.LET; break;
case "=":
Comparison = eComparison.E; break;
case "!=":
Comparison = eComparison.NE; break;
case "C":
Comparison = eComparison.I; break;
case "!C":
Comparison = eComparison.NI; break;
default:
continue;
break;
}
//object
cProperty TmpProp = null;
if (ObjValue.PropertyType.Type == eDataType.DOUBLE)
{
TmpProp = new cProperty(new cPropertyType("", eDataType.DOUBLE), (double)this.ListFormForPanelFilterPropertyHits[IDxPanel].numericUpDownValuePropToBeCompared.Value);
}
else if (ObjValue.PropertyType.Type == eDataType.INTEGER)
{
TmpProp = new cProperty(new cPropertyType("", eDataType.INTEGER), (int)this.ListFormForPanelFilterPropertyHits[IDxPanel].numericUpDownValuePropToBeCompared.Value);
}
else if (ObjValue.PropertyType.Type == eDataType.BOOL)
{
if ((int)this.ListFormForPanelFilterPropertyHits[IDxPanel].numericUpDownValuePropToBeCompared.Value == 1)
TmpProp = new cProperty(new cPropertyType("", eDataType.BOOL), true);
else
TmpProp = new cProperty(new cPropertyType("", eDataType.BOOL), false);
}
else if (ObjValue.PropertyType.Type == eDataType.STRING)
{
TmpProp = new cProperty(new cPropertyType("", eDataType.STRING), (string)this.ListFormForPanelFilterPropertyHits[IDxPanel].TextBoxValuePropToBeCompared.Text);
}
else
{
continue;
}
bool ResComparison = cListProperty.Compare(ObjValue, TmpProp, Comparison);
if (ResComparison)
{
IsHit = true;
}
else
{
IsHit = false;
TmpWell.SetClass(NonHitClass);
break;
}
IDxPanel++;
}
if (this.checkBoxTransferToHitList.Checked)
{
if (IsHit) TmpWell.AddToListWellsGUI();
}
else
{
if (IsHit) TmpWell.SetClass(HitClass);
else
{
if(this.checkBoxIsRejectedClass.Checked)
TmpWell.SetClass(NonHitClass);
}
}
#endregion
}
}
}