private void statisticsToolStripMenuItem1_Click_1(object sender, EventArgs e)
{
string NameFunction = "";
if (_StatCVItem.Checked)
NameFunction = "Coeff. of Variation";
else if (_StatMeanItem.Checked)
NameFunction = "Mean";
else if (_StatSumItem.Checked)
NameFunction = "Sum";
else if (_StatJarqueBeraItem.Checked)
NameFunction = "Jarque-Bera";
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = new cExtendedTable(GUI_ListClasses.GetOutPut());// GetOutPut();
int IdxClass = -1;
for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++)
{
if (ListClassSelected[0][IdxC] == 1) IdxClass = IdxC;
}
#region single plate and plate by plate
cDesignerTab DT = new cDesignerTab();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
}
else
ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, true);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 3))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedList ListValues = new cExtendedList();
List<cDescriptorType> ListDescs = new List<cDescriptorType>();
List<string> ListNames = new List<string>();
int RealIdx = 0;
for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue;
cExtendedTable TableForValues = new cExtendedTable();
TableForValues.Add(NewTable1[RealIdx]);
RealIdx++;
if (_StatJarqueBeraItem.Checked)
{
cNormalityJarqueBera JB = new cNormalityJarqueBera();
JB.SetInputData(TableForValues);
JB.Run();
ListValues.Add(JB.GetOutPut()[0][0]);
}
else
{
cStatistics CS = new cStatistics();
CS.UnselectAll();
if (_StatCVItem.Checked)
CS.IsCV = true;
else if (_StatMeanItem.Checked)
CS.IsMean = true;
else if (_StatSumItem.Checked)
CS.IsSum = true;
CS.SetInputData(TableForValues);
CS.Run();
ListValues.Add(CS.GetOutPut()[0][0]);
}
ListDescs.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListValues));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListDescs);
ET.Name = TmpPlate.GetName() + "\n" + NameFunction + " - " + cGlobalInfo.ListWellClasses[IdxClass].Name + " (" + NewTable1[0].Count + " wells)";
ET[0].Name = ET.Name;
cSort S = new cSort();
S.SetInputData(ET);
S.ColumnIndexForSorting = 0;
S.Run();
//ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(S.GetOutPut());
VG1.Chart.LabelAxisY = NameFunction;
VG1.Chart.LabelAxisX = "Descriptor";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Title = TmpPlate.GetName();
VG1.Run();
DT.SetInputData(VG1.GetOutPut());
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW.Title = NameFunction + " - " + ListPlatesToProcess[0].GetName();
else
CDW.Title = NameFunction + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
#endregion
#region entire screening
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
cExtendedList ListZ = new cExtendedList();
List<cPlate> ListPlatesForZFactor = new List<cPlate>();
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 3))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
if (_StatJarqueBeraItem.Checked)
{
cNormalityJarqueBera JB = new cNormalityJarqueBera();
JB.SetInputData(NewTable1);
JB.Run();
ListZ.Add(JB.GetOutPut()[0][0]);
}
else
{
cStatistics CS = new cStatistics();
CS.UnselectAll();
if (_StatCVItem.Checked)
CS.IsCV = true;
else if (_StatMeanItem.Checked)
CS.IsMean = true;
else if (_StatSumItem.Checked)
CS.IsSum = true;
CS.SetInputData(NewTable1);
CS.Run();
ListZ.Add(CS.GetOutPut()[0][0]);
}
ListPlatesForZFactor.Add(TmpPlate);
}
#endregion
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListPlatesForZFactor);
ET.Name = NameFunction + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(ET);
VG1.Chart.LabelAxisY = NameFunction;
VG1.Chart.LabelAxisX = "Plate";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
VG1.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(VG1.GetOutPut());
CDW.Title = NameFunction + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
}
private void PerformTestType(eTestType TestType)
{
#region extract classes of interest
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = !_DescEvolCellByCellItem.Checked;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
#endregion
cDesignerTab DT = new cDesignerTab();
for (int i = 0; i < cGlobalInfo.CurrentScreening.ListDescriptors.Count; i++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[i].IsActive() == false) continue;
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
cViewerTable VTable = new cViewerTable();
cViewertext VT = new cViewertext();
cExtendedTable FinalTable = new cExtendedTable(cGlobalInfo.ListWellClasses.Count, 0, 0);
for (int j = 0; j < cGlobalInfo.ListWellClasses.Count; j++)
{
FinalTable[j].Tag = cGlobalInfo.ListWellClasses[j];
FinalTable[j].Name = cGlobalInfo.ListWellClasses[j].Name;
}
cListWells ListWellsToProcess = new cListWells(null);
cDescriptorType CurrentDesc = cGlobalInfo.CurrentScreening.ListDescriptors[i];
// build the table
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell CurrentWell in CurrentPlate.ListActiveWells)
{
if ((CurrentWell.GetCurrentClassIdx() < 0) || (ListClassSelected[0][CurrentWell.GetCurrentClassIdx()] == 0)) continue;
{
FinalTable[CurrentWell.GetCurrentClassIdx()].Add(CurrentWell.GetAverageValue(CurrentDesc));
ListWellsToProcess.Add(CurrentWell);
}
}
}
cClean C = new cClean();
C.SetInputData(FinalTable);
C.Run();
cExtendedTable NewTable = C.GetOutPut();
cTwoSampleFTest TSFTest = null;
cANOVA Anova = null;
cTwoSampleUnpooledTTest TwoSampleTTest = null;
cStudent_tTest StudentTTest = null;
if (TestType == eTestType.F_TEST)
{
TSFTest = new cTwoSampleFTest();
TSFTest.SetInputData(NewTable);
TSFTest.Run();
VTable.SetInputData(TSFTest.GetOutPut());
VT.SetInputData(TSFTest.GetInfo());
}
else if (TestType == eTestType.ANOVA)
{
Anova = new cANOVA();
Anova.SetInputData(NewTable);
Anova.Run();
VTable.SetInputData(Anova.GetOutPut());
VT.SetInputData(Anova.GetInfo());
}
else if (TestType == eTestType.TWO_SAMPLES_T_TEST)
{
TwoSampleTTest = new cTwoSampleUnpooledTTest();
TwoSampleTTest.SetInputData(NewTable);
TwoSampleTTest.Run();
VTable.SetInputData(TwoSampleTTest.GetOutPut());
VT.SetInputData(TwoSampleTTest.GetInfo());
}
else if (TestType == eTestType.STUDENT_T_TEST)
{
StudentTTest = new cStudent_tTest();
StudentTTest.SetInputData(NewTable);
StudentTTest.Run();
VTable.SetInputData(StudentTTest.GetOutPut());
VT.SetInputData(StudentTTest.GetInfo());
}
VTable.DigitNumber = -1;
VTable.Run();
DS.SetInputData(VTable.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Run();
DS.Title = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
cDesignerSplitter DSMain = new cDesignerSplitter();
DSMain.Orientation = Orientation.Horizontal;
DSMain.SetInputData(DS.GetOutPut());
// Compute and display associated Stacked histogram
//CDW1.Title = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates";
cExtendedTable TableForHisto = ListWellsToProcess.GetAverageDescriptorValues(i);
TableForHisto.Name = "";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(TableForHisto);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
CV1.Chart.IsLegend = true;
CV1.Run();
DSMain.SetInputData(CV1.GetOutPut());
DSMain.Title = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
DSMain.Run();
DT.SetInputData(DSMain.GetOutPut());
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Classification Significance - " + TestType.ToString();
DTW.Run();
DTW.Display();
}
private void lDAToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 2)
{
MessageBox.Show("At least two classes have to be selected to perfom a LDA.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDisplayToWindow vD = new cDisplayToWindow();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
cListWells ListWellsToProcess = new cListWells(null);
cExtendedList ListClasses = new cExtendedList();
ListClasses.Name = "Classes";
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1))
{
ListWellsToProcess.Add(item);
ListClasses.Add(item.GetCurrentClassIdx());
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
NewTable.Add(ListClasses);
cProjectorLDA LDA = new cProjectorLDA();
LDA.SetInputData(NewTable);
cFeedBackMessage FM = LDA.Run();
if (!FM.IsSucceed)
{
MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cViewerTable VHM = new cViewerTable();
cExtendedTable CT = LDA.GetOutPut();
foreach (var item in CT)
{
cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item);
foreach (cDescriptorType Desc in item.ListTags)
DLC.Add(Desc);
item.Tag = DLC;
}
VHM.SetInputData(CT);
VHM.Run();
vD.SetInputData(VHM.GetOutPut());
vD.Title = "LDA - " + TmpPlate.GetName() + " : " + ListWellsToProcess.Count + " wells";
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
cExtendedList ListClasses = new cExtendedList();
ListClasses.Name = "Classes";
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
{
ListWellsToProcess.Add(item);
ListClasses.Add(item.GetCurrentClassIdx());
}
}
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
NewTable.Add(ListClasses);
cProjectorLDA LDA = new cProjectorLDA();
LDA.SetInputData(NewTable);
cFeedBackMessage FM = LDA.Run();
if (!FM.IsSucceed)
{
MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cExtendedTable CT = LDA.GetOutPut();
foreach (var item in CT)
{
cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item);
foreach (cDescriptorType Desc in item.ListTags)
DLC.Add(Desc);
item.Tag = DLC;
}
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CT);
VHM.Run();
vD.SetInputData(VHM.GetOutPut());
vD.Title = "LDA - " + ListWellsToProcess.Count + " wells.";
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
cExtendedList ListClasses = new cExtendedList();
ListClasses.Name = "Classes";
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
{
ListWellsToProcess.Add(item);
ListClasses.Add(item.GetCurrentClassIdx());
}
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
NewTable.Add(ListClasses);
NewTable.Name = TmpPlate.GetName();
cProjectorLDA LDA = new cProjectorLDA();
LDA.SetInputData(NewTable);
cFeedBackMessage FM = LDA.Run();
if (!FM.IsSucceed)
{
MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cExtendedTable CT = LDA.GetOutPut();
foreach (var item in CT)
{
cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item);
foreach (cDescriptorType Desc in item.ListTags)
DLC.Add(Desc);
item.Tag = DLC;
}
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CT);
VHM.Run();
CDT.SetInputData(VHM.GetOutPut());
}
CDT.Run();
vD.SetInputData(CDT.GetOutPut());
}
else
return;
vD.Run();
vD.Display();
}
private void testMultiScatterToolStripMenuItem_Click(object sender, EventArgs e)
{
//V1D.Chart.LabelAxisX = "Well Index";
//V1D.Chart.LabelAxisY = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
//V1D.Chart.BackgroundColor = Color.LightYellow;
//V1D.Chart.IsXAxis = true;
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDesignerSplitter CDC = new cDesignerSplitter();
cListWells ListWellsToProcess = new cListWells(null);
//foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName();
//if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
for (int IdxDesc0 = 0; IdxDesc0 < DataFromPlate.Count; IdxDesc0++)
for (int IdxDesc1 = 1; IdxDesc1 < DataFromPlate.Count; IdxDesc1++)
{
cViewer2DScatterPoint V1D = new cViewer2DScatterPoint();
V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
V1D.Chart.IdxDesc0 = IdxDesc0;
V1D.Chart.IdxDesc1 = IdxDesc1;
V1D.SetInputData(DataFromPlate);
V1D.Run();
V1D.Chart.Width = 0;
V1D.Chart.Height = 0;
cDesignerSinglePanel Designer0 = new cDesignerSinglePanel();
Designer0.SetInputData(V1D.GetOutPut());
Designer0.Run();
CDC.SetInputData(Designer0.GetOutPut());
}
}
CDC.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(CDC.GetOutPut());
Disp0.Title = "2D Scatter points graph - wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
public void ExportToHTML(cDescriptorType Desc)
{
if (Desc.IsConnectedToDatabase == false) return;
List<cDescriptorType> LCDT = new List<cDescriptorType>();
LCDT.Add(Desc);
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
cGUI_ListClasses GUIClasses = new cGUI_ListClasses();
GUIClasses.IsCheckBoxes = true;
GUIClasses.IsSelectAll = true;
GUIClasses.ClassType = eClassType.PHENOTYPE;
if (!GUIClasses.Run().IsSucceed) return;
int IDx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
if ((GUIClasses.GetOutPut()[0][IDx++] != 0))
ListCellularPhenotypesToBeSelected.Add(item);
}
cExtendedTable ET = new cExtendedTable(cGlobalInfo.CurrentScreening.Columns, cGlobalInfo.CurrentScreening.Rows, 0);
ET.Name = this.Name + " [" + Desc.GetName() + "]";
ET.ListRowNames = new List<string>();
for (int i = 0; i < ET[0].Count; i++)
{
ET.ListRowNames.Add(((char)(i + 65)).ToString());
}
FormForProgress MyProgressBar = new FormForProgress();
MyProgressBar.progressBar.Maximum = this.ListActiveWells.Count;
MyProgressBar.Show();
//ET.ListTags = new List<object>();
for (int i = 0; i < cGlobalInfo.CurrentScreening.Columns; i++)
{
ET[i].ListTags = new List<object>();
ET[i].Name = (i + 1).ToString();
for (int j = 0; j < cGlobalInfo.CurrentScreening.Rows; j++)
{
MyProgressBar.progressBar.Update();
cWell TmpWell = this.GetWell(i, j, true);
if (TmpWell == null)
{
ET[i].ListTags.Add("n.a.");
continue;
}
MyProgressBar.progressBar.Value++;
cExtendedTable TmpET = null;
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportStackedHisto.Checked)
TmpET = TmpWell.GetValuesList(LCDT, ListCellularPhenotypesToBeSelected, true);
else
TmpET = TmpWell.GetValuesList(LCDT, ListCellularPhenotypesToBeSelected, false);
TmpET.Name = "[" + TmpWell.GetPos() + "] - " + TmpET[0].Count + " Objects";
// get the values associated to this well and descriptor
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportStackedHisto.Checked)
{
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = "Stacked Histogram - " + this.GetName();
int Idx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
FinalTable.Add(new cExtendedList());
FinalTable[Idx].Name = item.Name;
FinalTable[Idx].Tag = item;
for (int k = 0; k < TmpET[1].Count; k++)
{
if (TmpET[1][k] == Idx)
FinalTable[Idx].Add(TmpET[0][k]);
}
Idx++;
}
cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VSH.SetInputData(FinalTable);//TmpET);
VSH.Chart.LabelAxisX = Desc.GetName();
VSH.Chart.IsLine = false;
VSH.Chart.CurrentTitle.Text = TmpET.Name;
if ((cGlobalInfo.OptionsWindow.radioButtonHistoDisplayManualMinMax.Checked) || (cGlobalInfo.OptionsWindow.radioButtonHistoDisplayAutomatedMinMax.Checked))
{
VSH.Chart.DefaultAxisXMin = new cExtendedList();
VSH.Chart.DefaultAxisXMin.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMin.Value);
VSH.Chart.DefaultAxisXMax = new cExtendedList();
VSH.Chart.DefaultAxisXMax.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMax.Value);
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportBackColorClass.Checked)
VSH.Chart.BackgroundColor = TmpWell.GetClassColor();
}
VSH.Chart.BinNumber = Desc.GetBinNumber();
VSH.Chart.IsShadow = false;
VSH.Chart.IsBorder = false;
VSH.Run();
ET[i].ListTags.Add((Chart)VSH.Chart);
}
else
{
cViewerHistogram VH = new cViewerHistogram();
VH.SetInputData(TmpET);
VH.Chart.LabelAxisX = Desc.GetName();
VH.Chart.CurrentTitle.Text = TmpET.Name;
if ((cGlobalInfo.OptionsWindow.radioButtonHistoDisplayManualMinMax.Checked) || (cGlobalInfo.OptionsWindow.radioButtonHistoDisplayAutomatedMinMax.Checked))
{
VH.Chart.DefaultAxisXMin = new cExtendedList();
VH.Chart.DefaultAxisXMin.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMin.Value);
VH.Chart.DefaultAxisXMax = new cExtendedList();
VH.Chart.DefaultAxisXMax.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMax.Value);
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportBackColorClass.Checked)
VH.Chart.BackgroundColor = TmpWell.GetClassColor();
}
VH.Run();
ET[i].ListTags.Add((Chart)VH.Chart);
}
}
}
MyProgressBar.Close();
cTableToHTML TToHTML = new cTableToHTML();
TToHTML.IsDisplayUIForFilePath = true;
TToHTML.SetInputData(ET);
TToHTML.Run();
}
private void covarianceMatrixToolStripMenuItem_Click(object sender, EventArgs e)
{
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDisplayToWindow vD = new cDisplayToWindow();
cDesignerTab DT = new cDesignerTab();
cCovarianceMatrix CM = new cCovarianceMatrix();
// CM.FTestTails = eFTestTails.BOTH;
if (this.ProcessModeplateByPlateToolStripMenuItem.Checked)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
vD.Title = "Covariance - " + TmpPlate.GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
}
else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// cTwoSampleFTest CM = new cTwoSampleFTest();
CM.SetInputData(NewTable);
CM.Run();
// cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
vD.Title = "Covariance - Entire screening (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
else
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// cTwoSampleFTest CM = new cTwoSampleFTest();
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
vD.Title = "Covariance - " + cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
DT.Run();
vD.SetInputData(DT.GetOutPut());
// vD.Title = "F-Test";
vD.Run();
vD.Display();
}
private void aToolStripMenuItem_Click_1(object sender, EventArgs e)
{
//if (CompleteScreening.ListDescriptors.GetListNameActives().Count <= 1)
//{
// MessageBox.Show("MINE Analysis requires at least two activated descriptors\n", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
// return;
//}
//bool IsFullScreen = false;
//List<double>[] ListValueDesc = ExtractDesciptorAverageValuesList(IsFullScreen);
//DisplayMINE(ListValueDesc);
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab DT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
ListWellsToProcess.Add(item);
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cMineAnalysis MA = new cMineAnalysis();
MA.SetInputData(NewTable);
MA.Is_BriefReport = true;
MA.CurrentScreening = cGlobalInfo.CurrentScreening;
MA.Run();
cDesignerTab SubDT = new cDesignerTab();
foreach (var item in MA.GetOutPut())
{
cViewerTable SubTable = new cViewerTable();
SubTable.Title = "MINE - " + item.Name;
SubTable.SetInputData(item);
SubTable.Run();
SubDT.SetInputData(SubTable.GetOutPut());
}
SubDT.Title = TmpPlate.GetName();
SubDT.Run();
DT.SetInputData(SubDT.GetOutPut());
}
DT.Run();
cDisplayToWindow TmpvD = new cDisplayToWindow();
TmpvD.SetInputData(DT.GetOutPut());
TmpvD.Title = "MINE analysis - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
TmpvD.Run();
TmpvD.Display();
}
else if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
ListWellsToProcess.Add(item);
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cMineAnalysis MA = new cMineAnalysis();
MA.SetInputData(NewTable);
MA.Is_BriefReport = true;
MA.CurrentScreening = cGlobalInfo.CurrentScreening;
MA.Run();
cDesignerTab SubDT = new cDesignerTab();
foreach (var item in MA.GetOutPut())
{
cViewerTable SubTable = new cViewerTable();
SubTable.Title = "MINE - " + item.Name;
SubTable.SetInputData(item);
SubTable.Run();
SubDT.SetInputData(SubTable.GetOutPut());
}
SubDT.Title = TmpPlate.GetName();
SubDT.Run();
cDisplayToWindow TmpvD = new cDisplayToWindow();
TmpvD.SetInputData(SubDT.GetOutPut());
TmpvD.Title = "MINE analysis - " + TmpPlate.GetName() + " : " + ListWellsToProcess.Count + " wells";
TmpvD.Run();
TmpvD.Display();
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cMineAnalysis MA = new cMineAnalysis();
MA.SetInputData(NewTable);
MA.Is_BriefReport = true;
MA.CurrentScreening = cGlobalInfo.CurrentScreening;
MA.Run();
cDesignerTab SubDT = new cDesignerTab();
foreach (var item in MA.GetOutPut())
{
cViewerTable SubTable = new cViewerTable();
SubTable.Title = "MINE - " + item.Name;
SubTable.SetInputData(item);
SubTable.Run();
SubDT.SetInputData(SubTable.GetOutPut());
}
SubDT.Run();
cDisplayToWindow TmpvD = new cDisplayToWindow();
TmpvD.SetInputData(SubDT.GetOutPut());
TmpvD.Title = "MINE analysis : " + ListWellsToProcess.Count + " wells";
TmpvD.Run();
TmpvD.Display();
}
}
private void dToolStripMenuItem_Click(object sender, EventArgs e)
{
cFeedBackMessage MessageReturned;
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
List<cWellClassType> ListWellClassesSelected = new List<cWellClassType>();
foreach (var item in ListClassSelected.ListTags)
{
ListWellClassesSelected.Add((cWellClassType)(item));
}
cViewerGraph1D V1D = new cViewerGraph1D();
V1D.Chart.IsSelectable = true;
V1D.Chart.LabelAxisX = "Well Index";
V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
V1D.Chart.IsXGrid = true;
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
cExtendedTable DataFromPlate = new cExtendedTable(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName();
V1D.Chart.IsShadow = true;
V1D.Chart.IsBorder = true;
//V1D.Chart.IsSelectable = true;
V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
V1D.SetInputData(DataFromPlate);
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells.Filter(ListWellClassesSelected).GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(DS.GetOutPut());
Disp0.Title = "Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
V1D.Chart.MarkerSize = 5;
V1D.Chart.IsBorder = false;
V1D.Chart.IsShadow = false;
cListWells ListWell = new cListWells(null);
int IdxWellForPlateSeparator = 0;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell TmpWell in TmpPlate.ListActiveWells)
{
int ClassTmp = TmpWell.GetCurrentClassIdx();
if ((ClassTmp == -1) || (GUI_ListClasses.GetOutPut()[0][TmpWell.GetCurrentClassIdx()] == 0)) continue;
ListWell.Add(TmpWell);
IdxWellForPlateSeparator++;
}
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxDisplayPlatesVerticalLines.Checked)
{
Classes.Base_Classes.General.cLineVerticalForGraph VL = new Classes.Base_Classes.General.cLineVerticalForGraph(IdxWellForPlateSeparator + 0.5);
VL.IsAllowMoving = false;
V1D.Chart.ListVerticalLines.Add(VL);
}
}
cExtendedTable DataFromPlate = new cExtendedTable(ListWell,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetName() + " - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
int MaxNumberOfPts = (int)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownMinNumPointForFastDisp.Value;
if (ListWell.Count > MaxNumberOfPts)
{
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText("\n" + V1D.Title + ": Number of Wells is Higher than " + MaxNumberOfPts + " => Switching to FastPoints Mode.\n");
V1D.Chart.ISFastPoint = true;
}
V1D.SetInputData(DataFromPlate);
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = ListWell.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(DS.GetOutPut());
Disp0.Title = "Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cExtendedTable DataFromPlate = new cExtendedTable(TmpPlate.ListActiveWells,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = TmpPlate.GetName();
V1D = new cViewerGraph1D();
V1D.Chart.IsSelectable = true;
V1D.Chart.LabelAxisX = "Well Index";
V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
V1D.Chart.IsXGrid = true;
V1D.Chart.CurrentTitle.Tag = TmpPlate;
V1D.SetInputData(DataFromPlate);
V1D.Title = TmpPlate.GetName();
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = TmpPlate.ListActiveWells.Filter(ListWellClassesSelected).GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.Title = TmpPlate.GetName();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
CDT.SetInputData(DS.GetOutPut());
}
CDT.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(CDT.GetOutPut());
Disp0.Title = "Scatter points graphs";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
}
private void testBoxPlotToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
cListWells ListWellsToProcess = new cListWells(null);
// cExtendedList ListClasses = new cExtendedList();
// ListClasses.Name = "Classes";
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
{
ListWellsToProcess.Add(item);
// ListClasses.Add(item.GetClassIdx());
}
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// NewTable.Add(ListClasses);
cViewerBoxPlot CV = new cViewerBoxPlot();
CV.SetInputData(NewTable);
CV.Run();
//cDesignerSinglePanel CDP = new cDesignerSinglePanel();
//CDP.SetInputData(CV.GetOutPut());
//CDP.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(CV.GetOutPut());
CDW.Title = CV.Title;
CDW.Run();
CDW.Display();
}
private void normalProbabilityPlotToolStripMenuItem2_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = new cExtendedTable(GUI_ListClasses.GetOutPut());// GetOutPut();
int IdxClass = -1;
for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++)
{
if (ListClassSelected[0][IdxC] == 1) IdxClass = IdxC;
}
#region single plate and plate by plate
cDescriptorType CurrentDesc = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor();
cDesignerTab DT = new cDesignerTab();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked))
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
}
else
ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
}
}
cComputeAndDisplayNormalPlot CADP = new cComputeAndDisplayNormalPlot();
CADP.SetInputData(ListWellsToProcess1);
CADP.Run();
cExtendedControl ControlForTab = CADP.GetOutPut();
ControlForTab.Title = TmpPlate.GetName();
DT.SetInputData(ControlForTab);
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess[0].GetName();
else
CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
#endregion
//#region entire screening
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
cListWells ListWellsToProcess1 = new cListWells(null);
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
}
}
}
cComputeAndDisplayNormalPlot CADP = new cComputeAndDisplayNormalPlot();
CADP.SetInputData(ListWellsToProcess1);
CADP.Run();
cExtendedControl ControlForTab = CADP.GetOutPut();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(ControlForTab);//VG1.GetOutPut());
CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
// ComputeAndDisplayMormalProbabilityPlot(false);
}
private void PopValueDescItem(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.ClassType = eClassType.PHENOTYPE;
GUI_ListClasses.IsCheckBoxes = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
List<cCellularPhenotype> LCP0 = new List<cCellularPhenotype>();
for (int IdxPheno = 0; IdxPheno < GUI_ListClasses.GetOutPut()[0].Count; IdxPheno++)
{
if (GUI_ListClasses.GetOutPut()[0][IdxPheno] == 1)
LCP0.Add(cGlobalInfo.ListCellularPhenotypes[IdxPheno]);
}
//if (LCP.Count == 0) return;
string description = "Number of elements of:\n";
foreach (var item in LCP0)
description += item.Name + "\n";
cDescriptorType NewAverageType = new cDescriptorType("Object_count", true, 1, description);
cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(NewAverageType);
FormForProgress ProgressWindow = new FormForProgress();
ProgressWindow.Show();
int IdxProgress = 0;
int MaxProgress = 0;
foreach (cPlate CurrentPlateToProcess in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
MaxProgress += (int)CurrentPlateToProcess.ListWells.Count;
ProgressWindow.progressBar.Maximum = MaxProgress;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
foreach (cWell Tmpwell in TmpPlate.ListWells)
{
TmpPlate.DBConnection = new cDBConnection(TmpPlate, Tmpwell.SQLTableName);
List<cDescriptorType> LDT = new List<cDescriptorType>();
LDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors[0]);
cExtendedTable CT = TmpPlate.DBConnection.GetWellValues(Tmpwell, LDT, LCP0, 1);
double NumObject0 = CT[0].Count;
//cExtendedTable CT1 = TmpPlate.DBConnection.GetWellValues(Tmpwell, LDT, LCP1, 1);
//double NumObject1 = CT1[0].Count;
cListSignature LDesc = new cListSignature();
cSignature NewDesc = new cSignature((double)NumObject0, NewAverageType, cGlobalInfo.CurrentScreening);
LDesc.Add(NewDesc);
Tmpwell.AddSignatures(LDesc);
TmpPlate.DBConnection.CloseConnection();
ProgressWindow.richTextBoxForComment.AppendText(TmpPlate.GetName() + " : " + Tmpwell.GetShortInfo().Remove(Tmpwell.GetShortInfo().Length - 2) + "\n");
ProgressWindow.progressBar.Value = IdxProgress++;
ProgressWindow.Refresh();
}
}
ProgressWindow.Close();
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
cGlobalInfo.CurrentScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
}
/// <summary>
/// This function displays the evolution of the average value of a certain descriptor through the plates, for a specified class
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void descriptorEvolutionToolStripMenuItem_Click(object sender, EventArgs e)
{
// if (CompleteScreening == null) return;
#region extract classes of interest
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = !_DescEvolCellByCellItem.Checked;
GUI_ListClasses.IsSelectAll = false;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
#endregion
cDescriptorType DT = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor();
cGUI_ListPlates GUI_ListPlates = new cGUI_ListPlates();
GUI_ListPlates.IsCheckBoxes = true;
GUI_ListPlates.ListInitialPlates = cGlobalInfo.CurrentScreening.ListPlatesActive;
// GUI_ListClasses.ListInitialPlates = null;
cFeedBackMessage FBM = GUI_ListPlates.Run();
richTextBoxConsole.AppendText(FBM.Message);
if (!FBM.IsSucceed) return;
cListPlates LP = GUI_ListPlates.GetOutPut();
if (_DescEvolCellByCellItem.Checked)
{
cExtendedTable FinalTable = new cExtendedTable();
foreach (cPlate CurrentPlate in LP)
{
cExtendedTable TmpFinalTable = new cExtendedTable();
int NumberOfWells = 0;
foreach (cWell item in CurrentPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() == -1) continue;
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
{
cExtendedTable TmpET = item.GetValuesList(DT);
if (TmpFinalTable.Count == 0)
{
TmpFinalTable = new cExtendedTable(TmpET);
}
else
{
cMerge M = new cMerge();
M.IsHorizontal = false;
M.SetInputData(TmpFinalTable, TmpET);
M.Run();
TmpFinalTable = M.GetOutPut();
}
NumberOfWells++;
}
}
if (NumberOfWells == 0) continue;
if (FinalTable.Count == 0)
{
FinalTable = new cExtendedTable(TmpFinalTable);
FinalTable[0].Name = CurrentPlate.GetName() + " (" + NumberOfWells + " wells)";
}
else
{
cMerge M = new cMerge();
M.IsHorizontal = true;
TmpFinalTable[0].Name = CurrentPlate.GetName() + " (" + NumberOfWells + " wells)";
M.SetInputData(FinalTable, TmpFinalTable);
M.Run();
FinalTable = M.GetOutPut();
}
}
cViewerHistogram VH = new cViewerHistogram();
FinalTable.Name = DT.GetName();
VH.Chart.LabelAxisX = DT.GetName();
VH.Chart.IsArea = true;
VH.Chart.IsPoint = false;
//VH.Chart.IsBar = false;
//VH.Chart.IsShadow = true;
VH.Chart.IsXGrid = VH.Chart.IsYGrid = false;
VH.Chart.Opacity = 200;
VH.Chart.IsLegend = true;
VH.SetInputData(FinalTable);
VH.Chart.CurrentTitle.Text = cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
VH.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(VH.GetOutPut());
DTW.Title = "Cell-by-Cell Descriptor Evolution";
DTW.Run();
DTW.Display();
//cExtendedTable ET = CompleteScreening.GetCurrentDisplayPlate().DBConnection.GetWellValues(
// this.AssociatedPlate.DBConnection.GetWellValues(this,
// LCDT,
// ListCellularPhenotypesToBeSelected);
}
else
{
cDisplayDescriptorEvolutions DEV = new cDisplayDescriptorEvolutions();
DEV.ListPlates = LP;
DEV.SetInputData(ListClassSelected);
DEV.Run(cGlobalInfo.CurrentScreening);
}
}
private void ToolStripMenuItem_DisplaySingleCellHistogram(object sender, EventArgs e)
{
cListWells ListWells = new cListWells();
List<cDescriptorType> LCDT = new List<cDescriptorType>();
LCDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor());
List<cWellClassType> ListForCurrentClass = new List<cWellClassType>();
ListForCurrentClass.Add(this);
cGUI_ListClasses GUIClasses = new cGUI_ListClasses();
GUIClasses.IsCheckBoxes = true;
GUIClasses.IsSelectAll = true;
GUIClasses.ClassType = eClassType.PHENOTYPE;
if (!GUIClasses.Run().IsSucceed) return;
cDesignerTab DT = new cDesignerTab();
if (cGlobalInfo.WindowHCSAnalyzer.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
ListWells.AddRange(CurrentPlate.ListWells.Filter(ListForCurrentClass));
}
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = "Stacked Histogram: " + ListWells.Count + " wells";
int Idx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
FinalTable.Add(new cExtendedList());
FinalTable[Idx].Name = item.Name;
FinalTable[Idx].Tag = item;
Idx++;
}
foreach (cWell TmpWell in ListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
int IDx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
if (GUIClasses.GetOutPut()[0][IDx] == 0) { IDx++; continue; }
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(item);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[IDx].AddRange(TmpET[0]);
IDx++;
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VSH.SetInputData(FinalTable);
VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VSH.Chart.IsShadow = false;
VSH.Chart.IsBorder = false;
VSH.Chart.IsXGrid = true;
VSH.Chart.IsYGrid = true;
VSH.Chart.LabelAxisX = LCDT[0].GetName();
VSH.Run();
VSH.Chart.Width = 0;
VSH.Chart.Height = 0;
VSH.GetOutPut().Title = cGlobalInfo.CurrentScreening.GetName();
DT.SetInputData(VSH.GetOutPut());
}
else
{
cListPlates ListPlates = new cListPlates();
if (cGlobalInfo.WindowHCSAnalyzer.ProcessModeplateByPlateToolStripMenuItem.Checked)
ListPlates = cGlobalInfo.CurrentScreening.ListPlatesActive;
else
ListPlates.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate CurrentPlate in ListPlates)
{
ListWells = CurrentPlate.ListWells.Filter(ListForCurrentClass);
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = "Stacked Histogram: " + ListWells.Count + " wells - " + CurrentPlate.GetName();
int Idx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
FinalTable.Add(new cExtendedList());
FinalTable[Idx].Name = item.Name;
FinalTable[Idx].Tag = item;
if (GUIClasses.GetOutPut()[0][Idx] == 0)
{
Idx++;
continue;
}
Idx++;
}
foreach (cWell TmpWell in ListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
int IDx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
if (GUIClasses.GetOutPut()[0][IDx] == 0) { IDx++; continue; }
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(item);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[IDx].AddRange(TmpET[0]);
IDx++;
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VSH.SetInputData(FinalTable);
VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VSH.Chart.IsShadow = false;
VSH.Chart.IsBorder = false;
VSH.Chart.IsXGrid = true;
VSH.Chart.IsYGrid = true;
VSH.Chart.LabelAxisX = LCDT[0].GetName();
VSH.Run();
VSH.Chart.Width = 0;
VSH.Chart.Height = 0;
VSH.GetOutPut().Title = CurrentPlate.GetName();
DT.SetInputData(VSH.GetOutPut());
}
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Single Cell Histograms";
DTW.Run();
DTW.Display();
}
private void histogramsToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUIClasses = new cGUI_ListClasses();
GUIClasses.IsCheckBoxes = false;
GUIClasses.ClassType = eClassType.PHENOTYPE;
if (!GUIClasses.Run().IsSucceed) return;
cGUI_ListClasses GUIClassesWells = new cGUI_ListClasses();
GUIClassesWells.IsCheckBoxes = true;
GUIClassesWells.ClassType = eClassType.WELL;
if (!GUIClassesWells.Run().IsSucceed) return;
List<cWellClassType> ListClass = new List<cWellClassType>();
for (int i = 0; i < GUIClassesWells.GetOutPut()[0].Count; i++)
{
if (GUIClassesWells.GetOutPut()[0][i] == 1)
ListClass.Add(cGlobalInfo.ListWellClasses[i]);
}
cGUI_ListPlates GUIListPlates = new cGUI_ListPlates();
GUIListPlates.IsCheckBoxes = true;
if (!GUIListPlates.Run().IsSucceed) return;
List<cDescriptorType> LCDT = new List<cDescriptorType>();
LCDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor());
cDesignerTab DT = new cDesignerTab();
DT.IsMultiline = false;
foreach (var TmpPlate in GUIListPlates.GetOutPut())
{
cListWells CurrentPlateListWells = TmpPlate.ListWells.Filter(ListClass);
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = TmpPlate.GetName() + " - " + CurrentPlateListWells.Count + " wells";
for (int i = 0; i < GUIClasses.GetOutPut()[0].Count; i++)
{
if (GUIClasses.GetOutPut()[0][i] == 1)
{
FinalTable.Add(new cExtendedList());
FinalTable[0].Name = cGlobalInfo.ListCellularPhenotypes[i].Name;
FinalTable[0].Tag = cGlobalInfo.ListCellularPhenotypes[i];
}
}
foreach (cWell TmpWell in CurrentPlateListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
for (int i = 0; i < GUIClasses.GetOutPut()[0].Count; i++)
{
if (GUIClasses.GetOutPut()[0][i] == 1)
{
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(cGlobalInfo.ListCellularPhenotypes[i]);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[0].AddRange(TmpET[0]);
break;
}
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerHistogram VH = new cViewerHistogram();
//cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VH.SetInputData(FinalTable);
//VH.Chart.BinNumber = -1;
//VSH.Chart.Is
//VH.ListProperties.FindByName("Bin Number").SetNewValue((int)100);
//VH.ListProperties.FindByName("Bin Number").IsGUIforValue = true;
// VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VH.Chart.IsShadow = false;
VH.Chart.IsBorder = true;
VH.Chart.IsXGrid = true;
VH.Chart.IsHistoNormalized = true;
VH.Chart.IsBar = true;
VH.Chart.IsYGrid = true;
VH.Chart.LabelAxisX = LCDT[0].GetName();
VH.Title = TmpPlate.GetName();
VH.Run();
VH.Chart.Width = 0;
VH.Chart.Height = 0;
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VH.GetOutPut());
cHistogramBuilder HB = new cHistogramBuilder();
HB.SetInputData(FinalTable);
HB.BinNumber = -1;
HB.IsNormalized = true;
HB.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(HB.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Title = TmpPlate.GetName();
DS.Run();
//DS.SetInputData(HB.Get
DT.SetInputData(DS.GetOutPut());
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Single cell based Histograms";
DTW.Run();
DTW.Display();
}
private void correlationMatrixToolStripMenuItem1_Click(object sender, EventArgs e)
{
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDesignerTab DT = new cDesignerTab();
if (this.ProcessModeplateByPlateToolStripMenuItem.Checked)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
//ListWellsToProcess.AddRange(TmpPlate.ListActiveWells);
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
cExtendedTable CorrelationMatrix = CM.GetOutPut();
weka.core.Instances Insts = CorrelationMatrix.CreateWekaInstances();
weka.clusterers.HierarchicalClusterer ClustererToReturn = new weka.clusterers.HierarchicalClusterer();
// string OptionDistance = " -N " + (int)Parameters.ListDoubleValues.Get("numericUpDownNumClasses").Value;
//string DistanceType = (string)Parameters.ListTextValues.Get("comboBoxDistance").Value;
//OptionDistance += " -A \"weka.core.";
//switch (DistanceType)
//{
// case "Euclidean":
// OptionDistance += "EuclideanDistance";
// break;
// case "Manhattan":
// OptionDistance += "ManhattanDistance";
// break;
// case "Chebyshev":
// OptionDistance += "ChebyshevDistance";
// break;
// default:
// break;
//}
//if (!(bool)Parameters.ListCheckValues.Get("checkBoxNormalize").Value)
// OptionDistance += " -D";
//OptionDistance += " -R ";
//OptionDistance += "first-last\"";
//string WekaOption = "-L " + (string)Parameters.ListTextValues.Get("comboBoxLinkType").Value + OptionDistance;
((weka.clusterers.HierarchicalClusterer)ClustererToReturn).setOptions(weka.core.Utils.splitOptions("-N 1 -L SINGLE -P -A \"weka.core.EuclideanDistance -R first-last\" "));
ClustererToReturn.buildClusterer(Insts);
//this.NumberOfClusters = ClustererToReturn.numberOfClusters();
cInfoForHierarchical IFH = new cInfoForHierarchical();
IFH.ListInstances = Insts;
cDendoGram DENDO = new cDendoGram(((weka.clusterers.HierarchicalClusterer)ClustererToReturn), IFH, GlobalInfo);
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - " + TmpPlate.GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
VHM.GetOutPut().Title = TmpPlate.GetName();
DT.SetInputData(VHM.GetOutPut());
}
}
else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - Entire screening (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
else
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - " + cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
DT.Run();
// DT.SetInputData(VT.GetOutPut());
//cDesignerColumn DC = new cDesignerColumn();
//DC.SetInputData(VHM.GetOutPut());
//DC.SetInputData(VT.GetOutPut());
//DC.Run();
//cDisplayDesigner DD = new cDisplayDesigner();
// DD.SetInputData(VHM.GetOutPut());
// DD.Run();
cDisplayToWindow vD = new cDisplayToWindow();
vD.SetInputData(DT.GetOutPut());
vD.Title = "Pearson Correlation";
vD.Run();
vD.Display();
//ComputeAndDisplayCorrelationMatrix(false, true, null);
}
private void aNOVAToolStripMenuItem1_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
string SubTitle = "ANOVA (One-Way)";
#region single plate and plate by plate
cDesignerTab DT = new cDesignerTab();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
}
else
ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cExtendedTable NewTable1 = new cExtendedTable();
List<cListWells> ListListWells = new List<cListWells>();
int NumWells = 0;
for (int IdxClassWell = 0; IdxClassWell < ListClassSelected[0].Count; IdxClassWell++)
{
if (ListClassSelected[0][IdxClassWell] >= 1)
{
List<cWellClassType> LCT = new List<cWellClassType>();
LCT.Add(cGlobalInfo.ListWellClasses[IdxClassWell]);
cListWells TmpList = TmpPlate.ListWells.Filter(LCT);
if (TmpList.Count >= 3)
{
ListListWells.Add(TmpList);
NumWells += TmpList.Count;
}
}
}
if (ListListWells.Count <= 1)
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedTable CompleteReport = null;
cExtendedList ListZ = new cExtendedList();
List<cDescriptorType> ListDescForZFactor = new List<cDescriptorType>();
List<string> ListNames = new List<string>();
int RealIdx = 0;
for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue;
cExtendedTable TableForZ = new cExtendedTable();
foreach (var item in ListListWells)
{
List<cDescriptorType> LType = new List<cDescriptorType>();
LType.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
cExtendedTable TTable = item.GetAverageDescriptorValues(LType, false, false);
TableForZ.Add(TTable[0]);
}
RealIdx++;
cANOVA ZF = new cANOVA();
ZF.SetInputData(TableForZ);
ZF.Run();
ListZ.Add(ZF.GetOutPut()[0][0]);
ZF.GetOutPut()[0].Name = cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].GetName();
if (CompleteReport == null)
CompleteReport = new cExtendedTable(ZF.GetOutPut());
else
{
cMerge M = new cMerge();
M.IsHorizontal = true;
M.SetInputData(CompleteReport, ZF.GetOutPut());
M.Run();
CompleteReport = M.GetOutPut();
}
ListDescForZFactor.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListDescForZFactor);
ET.Name = TmpPlate.GetName() + "\n" + SubTitle + " - " + NumWells + " wells";// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cSort S = new cSort();
S.SetInputData(ET);
S.IsAscending = false;
S.ColumnIndexForSorting = 0;
S.Run();
//ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(S.GetOutPut());
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Descriptor";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
//VG1.Chart.Max
VG1.Title = TmpPlate.GetName();
// Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.05);
// VLZ05.IsAllowMoving = true;
// VG1.Chart.ListHorizontalLines.Add(VLZ05);
VG1.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VG1.GetOutPut());
cTranspose T = new cTranspose();
T.SetInputData(CompleteReport);
T.Run();
CompleteReport = T.GetOutPut();
CompleteReport[0].Name = "P-Value";
CompleteReport[1].Name = "Is significant ?";
cSort S1 = new cSort();
S1.SetInputData(CompleteReport);
S1.ColumnIndexForSorting = 0;
S1.IsAscending = true;
S1.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(S1.GetOutPut());
VT.DigitNumber = -1;
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Title = TmpPlate.GetName();
DS.Run();
DT.SetInputData(DS.GetOutPut());
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW.Title = SubTitle + " - " + ListPlatesToProcess[0].GetName();
else
CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
#endregion
#region entire screening
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
cExtendedList ListZ = new cExtendedList();
List<cPlate> ListPlatesForZFactor = new List<cPlate>();
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
cListWells ListWellsToProcess2 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
if (ListClassSelected[1][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess2.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
//cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, false);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 2) || (NewTable2.Count == 0) || (NewTable2[0].Count < 2))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedTable TableForZ = new cExtendedTable();
TableForZ.Add(NewTable1[0]);
TableForZ.Add(NewTable2[0]);
cStudent_tTest ZF = new cStudent_tTest();
ZF.SetInputData(TableForZ);
ZF.Run();
double Zfactor = ZF.GetOutPut()[0][1];
ListZ.Add(Zfactor);
// update plate quality
//TmpPlate.ListProperties.UpdateValueByName("Quality", Math.Exp(Zfactor - 1));
//cProperty Prop = TmpPlate.ListProperties.FindByName("Quality");
//Prop.Info = ZF.GetInfo();
ListPlatesForZFactor.Add(TmpPlate);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListPlatesForZFactor);
ET.Name = SubTitle + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + /*" (" + NewTable1[0].Count + " wells)*/ " vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name;// +" (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(ET);
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Plate";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
VG1.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(VG1.GetOutPut());
CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
#endregion
}
}
private void stackedHistogramsToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDisplayToWindow CDW1 = new cDisplayToWindow();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeEntireScreeningToolStripMenuItem.Checked))
{
cListWells ListWellsToProcess = new cListWells(null);
List<cPlate> PlateList = new List<cPlate>();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
PlateList.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
else
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) PlateList.Add(TmpPlate);
}
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram (" + PlateList[0].GetName() + ")";
else
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates";
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = CDW1.Title;
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
CDW1.SetInputData(CV1.GetOutPut());
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - " + TmpPlate.GetName();
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Title = TmpPlate.GetName();
CV1.Run();
CDT.SetInputData(CV1.GetOutPut());
}
CDT.Run();
CDW1.SetInputData(CDT.GetOutPut());
CDW1.Title = "Stacked Histogram - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
}
CDW1.Run();
CDW1.Display();
}
private void dToolStripMenuItem1_Click(object sender, EventArgs e)
{
cFeedBackMessage MessageReturned;
cViewer2DScatterPoint V1D = new cViewer2DScatterPoint();
V1D.Chart.IsSelectable = true;
//V1D.Chart.LabelAxisX = "Well Index";
//V1D.Chart.LabelAxisY = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
//V1D.Chart.BackgroundColor = Color.LightYellow;
//V1D.Chart.IsXAxis = true;
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
//cDisplayToWindow CDW1 = new cDisplayToWindow();
// cListWell ListWellsToProcess = new cListWell();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
//cExtendedTable DataFromPlate = new cExtendedTable(CompleteScreening.GetCurrentDisplayPlate().ListActiveWells,
// CompleteScreening.ListDescriptors.CurrentSelectedDescriptor);
cListWells ListWellsToProcess = new cListWells(null);
//foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName();
V1D.Chart.IsShadow = true;
V1D.Chart.IsBorder = true;
V1D.Chart.IsSelectable = true;
V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
V1D.SetInputData(DataFromPlate);
MessageReturned = V1D.Run();
if (MessageReturned.IsSucceed == false)
{
MessageBox.Show(MessageReturned.Message, "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDesignerSinglePanel Designer0 = new cDesignerSinglePanel();
Designer0.SetInputData(V1D.GetOutPut());
Designer0.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(Designer0.GetOutPut());
Disp0.Title = "2D Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
V1D.Chart.MarkerSize = 5;
V1D.Chart.IsBorder = false;
//List<cWell> ListWell = new List<cWell>();
//foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
// foreach (cWell TmpWell in TmpPlate.ListActiveWells)
// ListWell.Add(TmpWell);
//cExtendedTable DataFromPlate = new cExtendedTable(ListWell,
// CompleteScreening.ListDescriptors.CurrentSelectedDescriptor);
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetName() + " - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
V1D.SetInputData(DataFromPlate);
V1D.Run();
cDesignerSinglePanel Designer0 = new cDesignerSinglePanel();
Designer0.SetInputData(V1D.GetOutPut());
Designer0.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(Designer0.GetOutPut());
Disp0.Title = "2D Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
//dislin.metafl("xwin");
//dislin.disini();
//dislin.name("X-axis", "X");
//dislin.name("Y-axis", "Y");
//dislin.title();
//dislin.axslen(1000, 1000);
////dislin.graf(0.0, 1.0, 0.0, 0.1, 0.0, 1.0, 0.0, 0.1);
////dislin.crvmat(func, n, n, 1, 1);
//dislin.disfin();
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
//cExtendedTable DataFromPlate = new cExtendedTable(TmpPlate.ListActiveWells,
// CompleteScreening.ListDescriptors.CurrentSelectedDescriptor);
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = TmpPlate.GetName();
V1D = new cViewer2DScatterPoint();
V1D.Chart.IsSelectable = true;
V1D.Chart.LabelAxisX = "Well Index";
V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
V1D.Chart.BackgroundColor = Color.LightYellow;
V1D.Chart.IsXGrid = true;
V1D.Chart.CurrentTitle.Tag = TmpPlate;
V1D.SetInputData(DataFromPlate);
V1D.Title = TmpPlate.GetName();
V1D.Run();
CDT.SetInputData(V1D.GetOutPut());
}
CDT.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(CDT.GetOutPut());
Disp0.Title = "2D Scatter points graphs";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
//if (CompleteScreening == null) return;
//SimpleFormForXY FormToDisplayXY = new SimpleFormForXY(false);
//FormToDisplayXY.CompleteScreening = CompleteScreening;
//for (int i = 0; i < (int)CompleteScreening.ListDescriptors.Count; i++)
//{
// FormToDisplayXY.comboBoxDescriptorX.Items.Add(CompleteScreening.ListDescriptors[i].GetName());
// FormToDisplayXY.comboBoxDescriptorY.Items.Add(CompleteScreening.ListDescriptors[i].GetName());
//}
//FormToDisplayXY.comboBoxDescriptorX.SelectedIndex = 0;
//FormToDisplayXY.comboBoxDescriptorY.SelectedIndex = 0;
//FormToDisplayXY.DisplayXY();
//FormToDisplayXY.ShowDialog();
//return;
}
private void ToolStripMenuItem_CopyWellsToList(object sender, EventArgs e)
{
cGUI_ListClasses GUIListClasses = new cGUI_ListClasses();
GUIListClasses.IsCheckBoxes = true;
if (GUIListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUIListClasses.GetOutPut();
foreach (cWell TmpWell in this.ListActiveWells)
{
if ((TmpWell.GetCurrentClassIdx() < 0) || (TmpWell.GetCurrentClassIdx() >= cGlobalInfo.ListWellClasses.Count)) continue;
if ((int)ListClassSelected[0][TmpWell.GetCurrentClassIdx()] == 1)
{
TmpWell.AddToListWellsGUI();
}
}
}