void LoadProperty()
{
cGUI_ListWellProperty GUI_ListWellProperty = new cGUI_ListWellProperty();
GUI_ListWellProperty.IsCheckBoxes = false;
if (GUI_ListWellProperty.Run().IsSucceed == false) return;
List<cPropertyType> ListSelectedProp = GUI_ListWellProperty.GetOutPut();
cCSVToTable CSVT = new cCSVToTable();
CSVT.IsDisplayUIForFilePath = true;
CSVT.IsContainRowNames = true;
CSVT.IsContainColumnHeaders = true;
CSVT.AddAsObject = true;
CSVT.Run();
cExtendedTable PlateDesign = CSVT.GetOutPut();
if (PlateDesign == null) return;
cListPlates LP = new cListPlates();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
LP.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
LP = cGlobalInfo.CurrentScreening.ListPlatesActive;
}
else
{
cGUI_ListPlates GUIListPlate = new cGUI_ListPlates();
if (GUIListPlate.Run().IsSucceed == false) return;
LP = GUIListPlate.GetOutPut();
}
for (int Col = 0; Col < cGlobalInfo.CurrentScreening.Columns; Col++)
for (int Row = 0; Row < cGlobalInfo.CurrentScreening.Rows; Row++)
{
if ((Col < PlateDesign.Count) && (Row < PlateDesign[Col].ListTags.Count))
{
object TmpObj = PlateDesign[Col].ListTags[Row];
//string TmpVal = "";
//if (TmpObj != null)
// TmpVal = (string)TmpObj;
foreach (cPlate CurrentPlate in LP)
{
cWell TmpWell = CurrentPlate.GetWell(Col, Row, false);
if ((TmpWell != null))
{
if (TmpObj == null)
{
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
else
{
if (/*(TmpObj.GetType() == typeof(string)) &&*/ (ListSelectedProp[0].Type == eDataType.STRING))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (string)TmpObj);
else if (/*(TmpObj.GetType() == typeof(double)) &&*/ (ListSelectedProp[0].Type == eDataType.DOUBLE))
{
double Res;
if (double.TryParse((string)TmpObj, out Res))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, Res);
else
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
else if (/*(TmpObj.GetType() == typeof(int)) &&*/ (ListSelectedProp[0].Type == eDataType.INTEGER))
{
int IntRes;
if (int.TryParse((string)TmpObj, out IntRes))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, IntRes);
else
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
}
// TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (int)Convert.ToDouble(TmpObj.ToString()));
//else if (TmpObj.GetType() == typeof(int) && (ListSelectedProp[0].Type == eDataType.INTEGER))
// TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (int)TmpObj);
}
}
}
}
richTextBoxConsole.AppendText(LP.Count + " plates updated !\n");
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
}
private void loadFromFileToolStripMenuItem_Click(object sender, EventArgs e)
{
cCSVToTable CSVT = new cCSVToTable();
CSVT.IsDisplayUIForFilePath = true;
CSVT.IsContainRowNames = true;
CSVT.IsContainColumnHeaders = true;
CSVT.Run();
cExtendedTable PlateDesign = CSVT.GetOutPut();
if (PlateDesign == null) return;
for (int Col = 0; Col < cGlobalInfo.CurrentScreening.Columns; Col++)
for (int Row = 0; Row < cGlobalInfo.CurrentScreening.Rows; Row++)
{
if ((Col < PlateDesign.Count) && (Row < PlateDesign[Col].Count))
{
double NewConcentration = (double)PlateDesign[Col][Row];
//if (cWell.cGlobalInfo.WindowHCSAnalyzer.checkBoxApplyTo_AllPlates.Checked)
{
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cWell TmpWell = CurrentPlate.GetWell(Col, Row, false);
if (TmpWell != null)
TmpWell.ListProperties.UpdateValueByName("Concentration", NewConcentration);
}
}
//else
// {
// cPlate CurrentPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
// CurrentPlate.GetWell(Col, Row, false).ListProperties.UpdateValueByName("Concentration", NewConcentration);
// }
}
}
}
private void loadExtendedTableToolStripMenuItem_Click(object sender, EventArgs e)
{
cCSVToTable CSVT = new cCSVToTable();
CSVT.IsDisplayUIForFilePath = true;
CSVT.IsContainRowNames = true;
CSVT.IsContainColumnHeaders = true;
CSVT.Run();
cDisplayExtendedTable DT = new Classes.MetaComponents.cDisplayExtendedTable();
DT.SetInputData(CSVT.GetOutPut());
DT.Run();
}
public List<cImageMetaInfo> GetImageInfo(object Sender)
{
// string FileName = "";
#region Operetta
// The image file name is composed as follows:
// r02c07f01p01rc1-ch1sk1fk1fl1.tiff
// r=row, c=coloumn, f=field, p=plane, rc= record (channel)
// (second part of the file name currently not in use)
if (this.ImagingPlatformType == eImagingPlatformType.HARMONY)
{
if (InitialPath == "") return null;
if (Sender.GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject SingleBiologicalObject = (cSingleBiologicalObject)Sender;
IEnumerable<string> ListDir = Directory.EnumerateDirectories(InitialPath, "*" + SingleBiologicalObject.AssociatedWell.AssociatedPlate.GetName() + "__*");
if (ListDir.Count() != 1) return null;
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
string NewDir = ListDir.ElementAt(0);
for (int Channel = 1; Channel <= NumberOfChannels; Channel++)
{
// get the well information
int c = SingleBiologicalObject.AssociatedWell.GetPosX();
int r = SingleBiologicalObject.AssociatedWell.GetPosY();
int f = SingleBiologicalObject.ImageField; // field
int p = 1; // plane
cImageMetaInfo TmpInfo = new cImageMetaInfo();
string Name = "r" + r.ToString("D2") +
"c" + c.ToString("D2") +
"f" + f.ToString("D2") +
"p" + p.ToString("D2") +
"rc" + Channel.ToString() +
"-ch1sk1fk1fl1.tiff";
TmpInfo.FileName = NewDir + "\\Images\\" + Name;// + "|";
ListImageMetaInfo.Add(TmpInfo);
}
return ListImageMetaInfo;
}
else if (Sender.GetType() == typeof(cWell))
{
cWell WellObject = (cWell)Sender;
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
IEnumerable<string> ListDir = Directory.EnumerateDirectories(InitialPath, "*Plate4__*");
if (ListDir.Count() != 1) return null;
string NewDir = ListDir.ElementAt(0);
for (int Channel = 1; Channel <= NumberOfChannels; Channel++)
{
cImageMetaInfo TmpInfo = new cImageMetaInfo();
// get the well information
int c = WellObject.GetPosX();
int r = WellObject.GetPosY();
int f = this.Field; // field
int p = 1; // plane
string Name = "r" + r.ToString("D2") +
"c" + c.ToString("D2") +
"f" + f.ToString("D2") +
"p" + p.ToString("D2") +
"rc" + Channel.ToString() +
"-ch1sk1fk1fl1.tiff";
TmpInfo.FileName = NewDir + "\\Images\\" + Name;
//FileName += NewDir + "\\Images\\" + Name + "|";
ListImageMetaInfo.Add(TmpInfo);
}
return ListImageMetaInfo;
}
}
#endregion
#region Harmony3.5
if (this.ImagingPlatformType == eImagingPlatformType.HARMONY35)
{
string PlateName;
cWell WellObject;
if (Sender.GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject SingleBiologicalObject = (cSingleBiologicalObject)Sender;
WellObject = SingleBiologicalObject.AssociatedWell;
PlateName = WellObject.AssociatedPlate.GetName();
this.Field = SingleBiologicalObject.ImageField - 1;
}
else if (Sender.GetType() == typeof(cWell))
{
WellObject = (cWell)Sender;
PlateName = WellObject.AssociatedPlate.GetName();
}
else
return null;
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
// Identify the directory of the associated plate
IEnumerable<string> ListDir = Directory.EnumerateDirectories(InitialPath, PlateName + "*", SearchOption.AllDirectories);
if (ListDir.Count() != 1) return null;
string CurrentPathForFile = ListDir.ElementAt(0) + "\\indexfile.txt";
if (File.Exists(CurrentPathForFile) == false) return null;
cCSVToTable CSVTable = new cCSVToTable();
CSVTable.SetInputData(CurrentPathForFile);
CSVTable.IsContainColumnHeaders = true;
CSVTable.AddAsObject = true;
CSVTable.Separator = "\t";
CSVTable.Run();
cExtendedTable ET = CSVTable.GetOutPut();
int c = WellObject.GetPosX();
int r = WellObject.GetPosY();
int f = this.Field + 1;
for (int IdxRow = 0; IdxRow < ET[0].ListTags.Count; IdxRow++)
{
int currentRow = int.Parse(ET[0].ListTags[IdxRow].ToString());
if (currentRow == r)
{
int currentCol = int.Parse(ET[1].ListTags[IdxRow].ToString());
if (currentCol == c)
{
int currentField = int.Parse(ET[4].ListTags[IdxRow].ToString());
if (currentField == f)
{
while (int.Parse(ET[4].ListTags[IdxRow].ToString()) == f)
{
cImageMetaInfo TmpInfo = new cImageMetaInfo();
//FileName += ET[8].ListTags[IdxRow].ToString() + "|";
for (int i = 0; i < ET.Count; i++)
{
if (ET[i].Name == "URL")
TmpInfo.FileName = ET[i].ListTags[IdxRow].ToString();
if (ET[i].Name == "Channel Name")
TmpInfo.Name = ET[i].ListTags[IdxRow].ToString();
if (ET[i].Name == "ImageResolutionX [m]")
TmpInfo.ResolutionX = double.Parse(ET[i].ListTags[IdxRow].ToString()) * 10E6;
if (ET[i].Name == "ImageResolutionY [m]")
TmpInfo.ResolutionY = double.Parse(ET[i].ListTags[IdxRow].ToString()) * 10E6;
if (ET[i].Name == "PositionX [m]")
TmpInfo.PositionX = double.Parse(ET[i].ListTags[IdxRow].ToString()) * 10E6;
if (ET[i].Name == "PositionY [m]")
TmpInfo.PositionY = double.Parse(ET[i].ListTags[IdxRow].ToString()) * 10E6;
}
ListImageMetaInfo.Add(TmpInfo);
IdxRow++;
}
goto _END;
}
}
}
}
_END: ;
return ListImageMetaInfo;
}
#endregion
#region ImageXPress
// The image file name is composed as follows:
// 140128_F21_s1_w174B98CD5-110B-4D9E-AF8F-326343D3C28D.tif
// <=> DATE_WELL_site_wavelenght_CheckSum
if (this.ImagingPlatformType == eImagingPlatformType.IMAGEXPRESS)
{
if (Sender.GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject SingleBiologicalObject = (cSingleBiologicalObject)Sender;
IEnumerable<string> ListDir = null;
try
{
ListDir = Directory.EnumerateDirectories(InitialPath, SingleBiologicalObject.AssociatedWell.AssociatedPlate.GetName(), SearchOption.AllDirectories);
}
catch (Exception e)
{
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(e.Message + "\n");
return null;
}
string NewDir;
try
{
NewDir = ListDir.ElementAt(0);
}
catch (Exception)
{
return null;
throw;
}
// get the well information
string Pos = SingleBiologicalObject.AssociatedWell.GetPos();
// IsThumb = "";
//140128_F21_s1_w1_thumbC02DD956-A29B-4B59-B231-A8DD0AAE37D1.tif
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
for (int Channel = 1; Channel <= NumberOfChannels; Channel++)
{
string Name = "*_" + Pos + "_s" + (this.Field + 1) + "_w" + Channel + "*.tif";
if (cGlobalInfo.OptionsWindow.numericUpDownImageAccessNumberOfFields.Value == 1)
Name = "*_" + Pos + "_w" + Channel + "*.tif";
ListDir = Directory.EnumerateFiles(NewDir, Name, SearchOption.AllDirectories);
int FileCount = ListDir.Count();
if (FileCount == 0) return null;
string FinalName = ListDir.ElementAt(0);
cImageMetaInfo TmpMetaInfo = new cImageMetaInfo();
TmpMetaInfo.FileName = FinalName;
ListImageMetaInfo.Add(TmpMetaInfo);
}
return ListImageMetaInfo;
}
else if (Sender.GetType() == typeof(cWell))
{
cWell WellObject = (cWell)Sender;
IEnumerable<string> ListDir = null;
try
{
ListDir = Directory.EnumerateDirectories(InitialPath, WellObject.AssociatedPlate.GetName(), SearchOption.AllDirectories);
}
catch (Exception e)
{
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(e.Message + "\n");
return null;
}
//if (ListDir.Count() != 1) return "Plate Not Found";
//string[] ListDIr = Directory.GetDirectories(InitialPath, WellObject.AssociatedPlate.GetName(), SearchOption.AllDirectories);
//if (ListDir.Count() > 1) return "Multiple Occurences Found";
string NewDir;
try
{
NewDir = ListDir.ElementAt(0);
}
catch (Exception)
{
return null;
throw;
}
// get the well information
string Pos = WellObject.GetPos();
// IsThumb = "";
//140128_F21_s1_w1_thumbC02DD956-A29B-4B59-B231-A8DD0AAE37D1.tif
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
for (int Channel = 1; Channel <= NumberOfChannels; Channel++)
{
string Name = "*_" + Pos + "_s" + (this.Field + 1) + "_w" + Channel + "*.tif";
if(cGlobalInfo.OptionsWindow.numericUpDownImageAccessNumberOfFields.Value==1)
Name = "*_" + Pos + "_w" + Channel + "*.tif";
ListDir = Directory.EnumerateFiles(NewDir, Name, SearchOption.AllDirectories);
int FileCount = ListDir.Count();
if (FileCount == 0) return null;
string FinalName = ListDir.ElementAt(0);
cImageMetaInfo TmpMetaInfo = new cImageMetaInfo();
TmpMetaInfo.FileName = FinalName;
ListImageMetaInfo.Add(TmpMetaInfo);
}
return ListImageMetaInfo;
}
}
#endregion
#region Cellomics
// The image file name is composed as follows:
//
// <=> DATE_WELL_site_wavelenght_CheckSum
if (this.ImagingPlatformType == eImagingPlatformType.CELLOMICS)
{
if (Sender.GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject SingleBiologicalObject = (cSingleBiologicalObject)Sender;
IEnumerable<string> ListDir = Directory.EnumerateDirectories(InitialPath, "*" + SingleBiologicalObject.AssociatedWell.AssociatedPlate.GetName() + "_*");
if (ListDir.Count() != 1) return null;
string NewDir = ListDir.ElementAt(0);
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
for (int Channel = 1; Channel <= NumberOfChannels; Channel++)
{
// get the well information
int c = SingleBiologicalObject.AssociatedWell.GetPosX();
int r = SingleBiologicalObject.AssociatedWell.GetPosY();
int f = SingleBiologicalObject.ImageField; // field
int p = 1; // plane
string Name = "r" + r.ToString("D2") +
"c" + c.ToString("D2") +
"f" + f.ToString("D2") +
"p" + p.ToString("D2") +
"rc" + Channel.ToString() +
"-ch1sk1fk1fl1.tif";
cImageMetaInfo TmpInfo = new cImageMetaInfo();
TmpInfo.FileName = NewDir + "\\Images\\" + Name;
ListImageMetaInfo.Add(TmpInfo);
//FileName += NewDir + "\\Images\\" + Name + "|";
}
return ListImageMetaInfo;
}
else if (Sender.GetType() == typeof(cWell))
{
cWell WellObject = (cWell)Sender;
IEnumerable<string> ListDir = null;
try
{
ListDir = Directory.EnumerateDirectories(InitialPath, WellObject.AssociatedPlate.GetName(), SearchOption.AllDirectories);
}
catch (Exception e)
{
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(e.Message + "\n");
return null;
}
//if (ListDir.Count() != 1) return "Plate Not Found";
//string[] ListDIr = Directory.GetDirectories(InitialPath, WellObject.AssociatedPlate.GetName(), SearchOption.AllDirectories);
//if (ListDir.Count() > 1) return "Multiple Occurences Found";
string NewDir;
try
{
NewDir = ListDir.ElementAt(0);
}
catch (Exception)
{
return null;
throw;
}
// get the well information
string Pos = WellObject.GetPos();
// MFGTMP-PC140320150001_A01f00d0.C01
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
OleDbConnection MyConnection = new OleDbConnection();
try
{
String connectionString = @"Provider=Microsoft.JET.OlEDB.4.0;"
+ "Data Source=" + NewDir + "\\" + WellObject.AssociatedPlate.GetName() + ".MDB";
MyConnection = new OleDbConnection(connectionString);
MyConnection.Open();
// get the real plate name
//OleDbDataAdapter da = new OleDbDataAdapter("Select * FROM asnPlate", MyConnection);
//DataSet ds = new DataSet();
//da.Fill(ds);
//DataTable dt = ds.Tables[0];
// string PlateName = dt.Rows[0]["Name"].ToString();
OleDbDataAdapter da = new OleDbDataAdapter("Select * FROM asnProtocolChannel", MyConnection);
DataSet ds = new DataSet();
da.Fill(ds);
DataTable dt = ds.Tables[0];
this.NumberOfChannels = dt.Rows.Count;
da = new OleDbDataAdapter("Select * FROM asnProtocolChannel", MyConnection);
ds = new DataSet();
da.Fill(ds);
dt = ds.Tables[0];
//for (int i = 1; i <= this.NumberOfChannels; i++)
//{
//
//}
for (int Channel = 0; Channel < NumberOfChannels; Channel++)
{
string ChannelName = dt.Rows[Channel]["Dye"].ToString();
string Name = WellObject.AssociatedPlate.GetName() + "_" + Pos + "f" + (this.Field + 1).ToString("00") + "d" + Channel + ".C01";
cImageMetaInfo TmpMetaInfo = new cImageMetaInfo();
TmpMetaInfo.Name = ChannelName;
TmpMetaInfo.FileName = NewDir + "\\" + Name;
ListImageMetaInfo.Add(TmpMetaInfo);
}
MyConnection.Close();
}
catch
{
return null;
throw;
}
return ListImageMetaInfo;
}
}
#endregion
#region INCell
// The image file name is composed as follows:
// 140128_F21_s1_w174B98CD5-110B-4D9E-AF8F-326343D3C28D.tif
// <=> DATE_WELL_site_wavelenght_CheckSum
if (this.ImagingPlatformType == eImagingPlatformType.INCELL)
{
cWell WellObject = null;
if (Sender.GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject SingleBiologicalObject = (cSingleBiologicalObject)Sender;
WellObject = SingleBiologicalObject.AssociatedWell;
this.IsThumbnail = false; // cannot have thumbnail of a biological object
}
else if (Sender.GetType() == typeof(cWell))
{
WellObject = (cWell)Sender;
}
IEnumerable<string> ListDir = null;
try
{
ListDir = Directory.EnumerateDirectories(InitialPath, WellObject.AssociatedPlate.GetName(), SearchOption.AllDirectories);
}
catch (Exception e)
{
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(e.Message + "\n");
return null;
}
string NewDir;
try
{
NewDir = ListDir.ElementAt(0);
}
catch (Exception)
{
return null;
throw;
}
// get the well information
string Pos = WellObject.GetPos();
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
string FinalPos = Pos[0] + " - " + WellObject.GetPosX().ToString("D2");
// find the channels Names
string Prefix = FinalPos + "(fld " + (this.Field + 1).ToString("D2") + " wv ";
string Name = Prefix;
if (IsThumbnail)
{
Name += "*.jpg";
NewDir += "\\thumbs";
}
else
Name += "*.tif";
string[] ListChannels = Directory.GetFiles(NewDir, Name, SearchOption.TopDirectoryOnly);
// if(NumberOfChannels>ListChannels.Count()) NumberOfChannels = ListChannels.Count();
NumberOfChannels = ListChannels.Count();
List<string> ListChannelNames = new List<string>();
string[] Sep = new string[1];
Sep[0] = "\\";
for (int Channel = 0; Channel < NumberOfChannels; Channel++)
{
Sep[0] = "\\";
string[] SplittedNames = ListChannels[Channel].Split(Sep, StringSplitOptions.None);
string TmpString = SplittedNames[SplittedNames.Length - 1];
TmpString = TmpString.Remove(0, Prefix.Length);
Sep[0] = " - ";
SplittedNames = TmpString.Split(Sep, StringSplitOptions.None);
ListChannelNames.Add(SplittedNames[0]);
}
for (int Channel = 0; Channel < NumberOfChannels; Channel++)
{
string FinalName = ListChannels[Channel];
cImageMetaInfo TmpMetaInfo = new cImageMetaInfo();
TmpMetaInfo.FileName = FinalName;
TmpMetaInfo.Name = ListChannelNames[Channel];
TmpMetaInfo.ResolutionX = 1;
TmpMetaInfo.ResolutionY = 1;
TmpMetaInfo.ResolutionZ = 1;
ListImageMetaInfo.Add(TmpMetaInfo);
}
return ListImageMetaInfo;
}
#endregion
#region CV7000
// The image file name is composed as follows:
// 140128_F21_s1_w174B98CD5-110B-4D9E-AF8F-326343D3C28D.tif
// <=> DATE_WELL_site_wavelenght_CheckSum
if (this.ImagingPlatformType == eImagingPlatformType.CV7000)
{
cWell WellObject = null;
if (Sender.GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject SingleBiologicalObject = (cSingleBiologicalObject)Sender;
WellObject = SingleBiologicalObject.AssociatedWell;
this.IsThumbnail = false; // cannot have thumbnail of a biological object
}
else if (Sender.GetType() == typeof(cWell))
{
WellObject = (cWell)Sender;
}
List<string> ListDir = new List<string>();
string ListDir2 = "";
try
{
//ListDir.Add(Directory.GetDirectories(InitialPath+"\\"+WellObject.GetShortInfo().Split('[')[1].Split(']')[0])[0]);
//for (int item=0; item<ListDir.Count;item++)
//{
// ListDir2.Add(Directory.GetDirectories(ListDir[item]).ToList());
//}
ListDir2 = InitialPath + "\\" + WellObject.GetShortInfo().Split('[')[1].Split(']')[0];
}
catch (Exception e)
{
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(e.Message + "\n");
return null;
}
string NewDir2;
try
{
//NewDir = ListDir.ElementAt(0);
NewDir2 = ListDir2;
}
catch (Exception)
{
return null;
throw;
}
// get the well information
string Pos = WellObject.GetPos();
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
string FinalPos = "*_" +Pos + "_T0001F" + (this.Field + 1).ToString("D3")+ "L01A";
// find the channels Names
string Prefix = FinalPos;
string Name = Prefix;
Name += "*Z01C*.tif";
//string NewDir2 = NewDir + "\\DMD plate 5\\";
List<string> ListChannels = Directory.GetFiles(NewDir2, Name, SearchOption.AllDirectories).ToList();
ListChannels.Sort(); //OrderBy(q=>q).ToList();
// if(NumberOfChannels>ListChannels.Count()) NumberOfChannels = ListChannels.Count();
NumberOfChannels = ListChannels.Count();
List<string> ListChannelNames = new List<string>();
string[] Sep = new string[1];
Sep[0] = "\\";
for (int Channel = 0; Channel < NumberOfChannels; Channel++)
{
Sep[0] = "\\";
string[] SplittedNames = ListChannels[Channel].Split(Sep, StringSplitOptions.None);
string TmpString = SplittedNames[SplittedNames.Length - 1];
TmpString = TmpString.Remove(0, Prefix.Length);
Sep[0] = " - ";
SplittedNames = TmpString.Split(Sep, StringSplitOptions.None);
ListChannelNames.Add(SplittedNames[0]);
}
string XMLFile = NewDir2 + "\\MeasurementDetail.mrf";
if (File.Exists(XMLFile))
{
XmlDocument xmlDoc = new XmlDocument();
xmlDoc.Load(XMLFile);
for (int Channel = 0; Channel < NumberOfChannels; Channel++)
{
string FinalName = ListChannels[Channel];
cImageMetaInfo TmpMetaInfo = new cImageMetaInfo();
TmpMetaInfo.FileName = FinalName;
TmpMetaInfo.Name = xmlDoc.ChildNodes[1].ChildNodes[1].Attributes["bts:Ch"].Value;//ListChannelNames[Channel];
TmpMetaInfo.ResolutionX = double.Parse(xmlDoc.ChildNodes[1].ChildNodes[1].Attributes["bts:HorizontalPixelDimension"].Value);//1;
TmpMetaInfo.ResolutionY = double.Parse(xmlDoc.ChildNodes[1].ChildNodes[1].Attributes["bts:VerticalPixelDimension"].Value);//1;
TmpMetaInfo.ResolutionZ = 1;
ListImageMetaInfo.Add(TmpMetaInfo);
}
}
else
{
for (int Channel = 0; Channel < NumberOfChannels; Channel++)
{
string FinalName = ListChannels[Channel];
cImageMetaInfo TmpMetaInfo = new cImageMetaInfo();
TmpMetaInfo.FileName = FinalName;
TmpMetaInfo.Name = ListChannelNames[Channel];
TmpMetaInfo.ResolutionX = 1;
TmpMetaInfo.ResolutionY = 1;
TmpMetaInfo.ResolutionZ = 1;
ListImageMetaInfo.Add(TmpMetaInfo);
}
}
return ListImageMetaInfo;
}
#endregion
#region Built In
// The image file name is composed as follows:
// r[run].p[plate].w[well].s[site]_channel
if (this.ImagingPlatformType == eImagingPlatformType.BUILTIN)
{
cWell WellObject = null;
if (Sender.GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject SingleBiologicalObject = (cSingleBiologicalObject)Sender;
WellObject = SingleBiologicalObject.AssociatedWell;
this.IsThumbnail = false; // cannot have thumbnail of a biological object
}
else if (Sender.GetType() == typeof(cWell))
{
WellObject = (cWell)Sender;
}
//IEnumerable<string> ListDir = null;
//try
//{
// ListDir = Directory.EnumerateDirectories(InitialPath, WellObject.AssociatedPlate.GetName(), SearchOption.AllDirectories);
//}
//catch (Exception e)
//{
// cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(e.Message + "\n");
// return null;
//}
//string NewDir;
//try
//{
// NewDir = ListDir.ElementAt(0);
//}
//catch (Exception)
//{
// return null;
// throw;
//}
// get the well information
string Pos = WellObject.GetPos();
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
string FinalPos = "*.p"+ WellObject.AssociatedPlate.GetName()+ ".w" + Pos + ".s" +(this.Field + 1).ToString()+"_*.*";
string[] ListChannels = Directory.GetFiles(InitialPath, FinalPos, SearchOption.TopDirectoryOnly);
// if(NumberOfChannels>ListChannels.Count()) NumberOfChannels = ListChannels.Count();
NumberOfChannels = ListChannels.Count();
List<string> ListChannelNames = new List<string>();
string[] Sep = new string[1];
Sep[0] = "\\";
for (int Channel = 0; Channel < NumberOfChannels; Channel++)
{
Sep[0] = "\\";
string[] SplittedNames = ListChannels[Channel].Split(Sep, StringSplitOptions.None);
string TmpString = SplittedNames[SplittedNames.Length - 1];
Sep[0] = "_";
SplittedNames = TmpString.Split(Sep, StringSplitOptions.None);
Sep[0] = ".";
SplittedNames = SplittedNames[1].Split(Sep, StringSplitOptions.None);
ListChannelNames.Add(SplittedNames[0]);
}
for (int Channel = 0; Channel < NumberOfChannels; Channel++)
{
string FinalName = ListChannels[Channel];
cImageMetaInfo TmpMetaInfo = new cImageMetaInfo();
TmpMetaInfo.FileName = FinalName;
TmpMetaInfo.Name = ListChannelNames[Channel];
TmpMetaInfo.ResolutionX = 1;
TmpMetaInfo.ResolutionY = 1;
TmpMetaInfo.ResolutionZ = 1;
ListImageMetaInfo.Add(TmpMetaInfo);
}
return ListImageMetaInfo;
}
#endregion
#region Manual
else if (this.ImagingPlatformType == eImagingPlatformType.MANUAL)
{
List<cImageMetaInfo> ListImageMetaInfo = new List<cImageMetaInfo>();
cImageMetaInfo TmpMetaInfo = new cImageMetaInfo();
if (Sender.GetType() == typeof(cSingleBiologicalObject))
{
cSingleBiologicalObject SingleBiologicalObject = (cSingleBiologicalObject)Sender;
TmpMetaInfo.FileName = SingleBiologicalObject.AssociatedWell.Info;
//FileName += SingleBiologicalObject.AssociatedWell.Info;
}
if (Sender.GetType() == typeof(cWell))
{
cWell Well = (cWell)Sender;
TmpMetaInfo.FileName = Well.Info;
//FileName += Well.Info;
}
ListImageMetaInfo.Add(TmpMetaInfo);
return ListImageMetaInfo;
}
#endregion
return null;
}