public void futtat()
{
int Deviation, Counter;
Counter = 0;
StreamWriter writer = new StreamWriter(s3 + "\\Output.txt");
GeneDatabase g1 = new GeneDatabase(s1);
GeneDatabase g2 = new GeneDatabase(s2);
Deviation = Convert.ToInt32(s4);
for (int i = 0; i < g1.count() - 1; i++)
{
for (int j = i + 1; j < g1.count(); j++)
{
for (int k = 0; k < g2.count(); k++)
{
if (Algoritmus.algorithm(g1.getGene(i).getGeneString(), g1.getGene(j).getGeneString(), g2.getGene(k).getGeneString(), Deviation))
{
writer.WriteLine(g2.getGene(k).getId() + " : " + g1.getGene(i).getId() + " , " + g1.getGene(j).getId());
Counter++;
}
}
}
}
System.Windows.MessageBox.Show("Fusion gene searching finished! " + Counter + " gene(s) were found!");
writer.Close();
}
static void Main(string[] args)
{
GeneDatabase geneDatabase = new GeneDatabase(@"..\..\..\..\Acralc1.fasta");
for (int i = 0; i < geneDatabase.count(); i++)
{
Console.WriteLine(geneDatabase.getGene(i).getId());
Console.WriteLine(geneDatabase.getGene(i).getGeneString());
}
}
private static void Main(string[] args)
{
StreamWriter writer = new StreamWriter("C:\\Users\\Ben\\Documents\\GitHub\\Bijoinfou\\Output.txt");
GeneDatabase g1 = new GeneDatabase("C:\\Users\\Ben\\Documents\\GitHub\\Bijoinfou\\ACLA.fasta");
GeneDatabase g2 = new GeneDatabase("C:\\Users\\Ben\\Documents\\GitHub\\Bijoinfou\\AGOS1.fasta");
for(int i = 0 ; i < g1.count() - 1 ; i++)
{
for(int j = i + 1 ; j < g1.count() ; j++)
{
for(int k = 0 ; k < g2.count() ; k++)
{
if(Algoritmus.algorithm(g1.getGene(i).getGeneString(), g1.getGene(j).getGeneString(), g2.getGene(k).getGeneString(), 200))
{
writer.WriteLine(g2.getGene(k).getId() + " : " + g1.getGene(i).getId() + " , " + g1.getGene(j).getId());
}
}
}
}
// Application.EnableVisualStyles();
// Application.SetCompatibleTextRenderingDefault(false);
// Application.Run(new MainForm());
//Algoritmus.algorithm();
writer.Close();
}
