private void createDictionary(FileStream fs)
{
string line;
using (StreamReader lineReader = new StreamReader(fs))
{
line = lineReader.ReadLine();
while ((line = lineReader.ReadLine()) != null)
{
if (line != "")
{
Match match = Regex.Match(line, @"(?<txtFile>\S*)(\s*)(?<sampleID>\S*)");
if (match.Groups["txtFile"].Value.Contains("genes.normalized_results"))
{
SampleData newSampleData = new SampleData();
newSampleData.TxtFile = match.Groups["txtFile"].Value;
newSampleData.SampleID = match.Groups["sampleID"].Value;
sampleData.Add(newSampleData);
}
}
}
}
}
private void addToMAP(XmlNode node,string filePath)
{
SampleData newSampleData = new SampleData();
foreach (SampleData data in sampleData)
{
string SampleIDShort = Regex.Match(data.SampleID,@"TCGA-\S{2}-\S{4}").Value;
if (filePath.Contains(SampleIDShort))
{
data.Value = node.InnerText;
listBoxValues.Items.Add(data.Value);
}
}
}