/// <summary>
/// Creates the basis for loading a new fastq file into the program.
/// </summary>
/// <param name="fileName">Name of the file</param>
/// <param name="fileLength">Length of the file</param>
/// <returns></returns>
public FqFileMap CreateNewFastqFile(String fileName, long fileLength)
{
fqFileMap = new FqFileMap();
fqFileMap.FileName = fileName;
fqFileMap.FileLength = fileLength;
return(fqFileMap);
}
/// <summary>
/// Resets the state of a controller for loading a new file
/// </summary>
public void PrimeForNewFile()
{
fqFileMap = null;
if (FlushMemoryOfProtobinFiles() == true)
{
UserResponse.InformationResponse("Protobin directory cleaned.");
}
}
/// <summary>
/// Method to be used in the event of the failure of the PerformAction method experiencing some exception.
/// Method warns user and flushes memory of fqprotobin files before returning program to initial state.
/// </summary>
/// <param name="mainMessage">Main message to send to user</param>
/// <param name="headerMessage">Header message to send to user</param>
public void ControllerStateFailureResponse(String mainMessage, String headerMessage)
{
UserResponse.ErrorResponse(mainMessage, headerMessage);
Console.WriteLine("Program Error. Exception Caught: {0}", mainMessage);
FlushMemoryOfProtobinFiles();
fqFileMap = null;
CONTROLLER_STATE = FastqControllerState.STATE_READY;
}
/// <summary>
/// Key method in the display class, makes a decision on what to output based on the previous active task from the generic
/// inputs transport class. Also accepts instance of the richtextbox which will display the output.
/// </summary>
/// <param name="input">Instance of the transport class. Used in this instance to inform the display class of previous activity</param>
/// <param name="textBox">The rich text box that will display the outputs</param>
public void Update(GenericFastqInputs input, RichTextBox textBox)
{
this.fqMap = FastqController.getInstance().GetFqFileMap();
this.textBox = textBox;
if (input.TaskAction == Task_FindSequences.statement)
{
AddFoundSequenceData();
}
else
{
ClearText();
DisplayFileDetails();
DisplayFastqFileDetails();
DisplayComponentDetais();
}
}
/// <summary>
/// Changes the chart type via this combo box
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void Charts_Combo_Selector_SelectedIndexChanged(object sender, EventArgs e)
{
if (FastqController.CONTROLLER_STATE == FastqController.FastqControllerState.STATE_READY)
{
FqFileMap map = FastqController.getInstance().GetFqFileMap();
if (map != null)
{
SetGraphicTrackBarDataSourceSize();
List <String> componentDetails = map.getFileComponentDirectories();
Dictionary <string, FqFile_Component_Details> componentMap = map.GetFqFileComponentDetailsMap();
if (componentDetails != null && componentMap != null)
{
int index = graphicsTrackBar.Value;
FqFile_Component_Details details;
String chartType = Charts_Combo_Selector.SelectedValue.ToString();
if (chartType.Equals(FastqGUI_Charts.FastqChartTypes.PerBaseSequenceStatistics.ToString()))
{
details = componentMap[componentDetails[index]];
drawChart(details, chartType);
}
else
{
if (index == 0)
{
details = FastqController.getInstance().GetFqFileMap().GlobalDetails;
drawChart(details, chartType);
}
else if (index > 0)
{
details = componentMap[componentDetails[index - 1]];
drawChart(details, chartType);
}
}
}
}
}
}
private void inputBox_SequenceLengthThresholdValidating(object sender, InputBoxValidatingArgs e)
{
if (e.Text.Trim().Length == 0)
{
e.Cancel = true;
e.Message = "Required";
}
else if (HelperMethods.safeParseInt(e.Text.Trim()) == false)
{
e.Cancel = true;
e.Message = "Required";
}
else
{
int i = Int32.Parse(e.Text.Trim());
FqFileMap map = FastqController.getInstance().GetFqFileMap();
if (i < map.GlobalDetails.MinSeqSize || i >= map.GlobalDetails.MaxSeqSize)
{
e.Cancel = true;
e.Message = "Required";
}
}
}
/// <summary>
/// Key method in the display class, makes a decision on what to output based on the previous active task from the generic
/// inputs transport class. Also accepts instance of the richtextbox which will display the output.
/// </summary>
/// <param name="input">Instance of the transport class. Used in this instance to inform the display class of previous activity</param>
/// <param name="textBox">The rich text box that will display the outputs</param>
public void Update(GenericFastqInputs input, RichTextBox textBox)
{
this.fqMap = FastqController.getInstance().GetFqFileMap();
this.textBox = textBox;
if (input.TaskAction == Task_FindSequences.statement)
AddFoundSequenceData();
else
{
ClearText();
DisplayFileDetails();
DisplayFastqFileDetails();
DisplayComponentDetais();
}
}
/// <summary>
/// Resets the state of a controller for loading a new file
/// </summary>
public void PrimeForNewFile()
{
fqFileMap = null;
if (FlushMemoryOfProtobinFiles() == true)
UserResponse.InformationResponse("Protobin directory cleaned.");
}
/// <summary>
/// Creates the basis for loading a new fastq file into the program.
/// </summary>
/// <param name="fileName">Name of the file</param>
/// <param name="fileLength">Length of the file</param>
/// <returns></returns>
public FqFileMap CreateNewFastqFile(String fileName, long fileLength)
{
fqFileMap = new FqFileMap();
fqFileMap.FileName = fileName;
fqFileMap.FileLength = fileLength;
return fqFileMap;
}
/// <summary>
/// Method to be used in the event of the failure of the PerformAction method experiencing some exception.
/// Method warns user and flushes memory of fqprotobin files before returning program to initial state.
/// </summary>
/// <param name="mainMessage">Main message to send to user</param>
/// <param name="headerMessage">Header message to send to user</param>
public void ControllerStateFailureResponse(String mainMessage, String headerMessage)
{
UserResponse.ErrorResponse(mainMessage, headerMessage);
Console.WriteLine("Program Error. Exception Caught: {0}", mainMessage);
FlushMemoryOfProtobinFiles();
fqFileMap = null;
CONTROLLER_STATE = FastqControllerState.STATE_READY;
}