public Ontology_association_line_class Deep_copy()
{
Ontology_association_line_class copy = (Ontology_association_line_class)this.MemberwiseClone();
copy.ProcessName = (string)this.ProcessName.Clone();
copy.GeneSymbol = (string)this.GeneSymbol.Clone();
return(copy);
}
private void Read_file()
{
string complete_fileName = Global_directory_class.Ontology_directory + this.Ontology.ToString() + ".txt";
StreamReader reader = new StreamReader(complete_fileName);
string inputLine;
string[] columnEntries;
string columnEntry;
int columnEntries_length;
string processName;
string geneSymbol;
Ontology_association_line_class onto_association_line;
List <Ontology_association_line_class> onto_associations = new List <Ontology_association_line_class>();
while ((inputLine = reader.ReadLine()) != null)
{
columnEntries = inputLine.Split(Global_class.Tab);
columnEntries_length = columnEntries.Length;
processName = columnEntries[0].Split('(')[0];
while (processName.Substring(processName.Length - 1, 1) == " ")
{
processName = processName.Substring(0, processName.Length - 1);
}
for (int indexC = 1; indexC < columnEntries_length; indexC++)
{
columnEntry = columnEntries[indexC];
if (!String.IsNullOrEmpty(columnEntry))
{
geneSymbol = columnEntry.Split(',')[0];
onto_association_line = new Ontology_association_line_class();
onto_association_line.GeneSymbol = (string)geneSymbol.Clone();
onto_association_line.ProcessName = (string)processName.Clone();
onto_associations.Add(onto_association_line);
}
}
}
this.Process_gene_associations = onto_associations.ToArray();
}
