public static void Main(String[] args)
{
String connectionString = @"Persist Security Info=False;User ID=pathcase;Password=dblab;Initial Catalog=polyposisdb_large3;Data Source=127.0.0.1;";
Database db = new Database(connectionString);
//open the database
db.OpenConnection();
if (args[0] == "label")
{
int PedigreeID = Convert.ToInt32(args[1]);
EGDL egdl = new EGDL(db);
DateTime start = DateTime.Now;
egdl.EGDLEncoding(PedigreeID);
TimeSpan time = DateTime.Now.Subtract(start);
Console.WriteLine(time.TotalMilliseconds + " ms");
Console.WriteLine("Finished!");
}
else if (args[0] == "average_inbreeding")
{
int PedigreeID = Convert.ToInt32(args[1]);
InbreedingCalculation ic = new InbreedingCalculation(db, PedigreeID);
double t = ic.AverageIC();
Console.WriteLine("Inbreeding Coefficient: " + t);
}
else if (args[0] == "average_nc")
{
int PedigreeID = Convert.ToInt32(args[1]);
InbreedingCalculation ic = new InbreedingCalculation(db, PedigreeID);
double t = ic.AverageICNC();
Console.WriteLine("Inbreeding Coefficient: " + t);
}
else if (args[0] == "test")
{
int PedigreeID = Convert.ToInt32(args[1]);
InbreedingCalculation ic = new InbreedingCalculation(db, 0);
Console.WriteLine(ic.CalculateNC(",1,1", "#,1#.0.0#,1,0#.0.0.0%.0.0.0%,1,1"));
}
//Console.Read();
//close the database
db.CloseConnection();
}
