public virtual void ReportProgress()
{
if (Run.ScanSetCollection == null || Run.ScanSetCollection.ScanSetList.Count == 0)
{
return;
}
var userState = new ScanBasedProgressInfo(Run, Run.CurrentScanSet);
var percentDone = _scanCounter / (float)(Run.ScanSetCollection.ScanSetList.Count) * 100;
userState.PercentDone = percentDone;
var logText = "Scan= " + Run.GetCurrentScanOrFrame() + "; PercentComplete= " +
percentDone.ToString("0.0");
BackgroundWorker?.ReportProgress((int)percentDone, userState);
if (_scanCounter % NumScansBetweenProgress == 0)
{
Logger.Instance.AddEntry(logText, true);
if (BackgroundWorker == null)
{
Console.WriteLine(DateTime.Now + "\t" + logText);
}
}
}
public override void ReportProgress()
{
if (Run.ScanSetCollection == null || Run.ScanSetCollection.ScanSetList.Count == 0)
{
return;
}
var userstate = new ScanBasedProgressInfo(Run, Run.CurrentScanSet, null);
var percentDone = (float)(_scanCounter) / (float)(Run.ScanSetCollection.ScanSetList.Count) * 100;
userstate.PercentDone = percentDone;
var logText = "Scan/Frame= " + Run.GetCurrentScanOrFrame() + "; PercentComplete= " + percentDone.ToString("0.0") + "; AccumlatedFeatures= " + Run.ResultCollection.getTotalIsotopicProfiles();
if (BackgroundWorker != null)
{
BackgroundWorker.ReportProgress((int)percentDone, userstate);
}
if (_scanCounter % NumScansBetweenProgress == 0 || mShowTraceMessages)
{
Logger.Instance.AddEntry(logText, Logger.Instance.OutputFilename);
if (BackgroundWorker == null)
{
Console.WriteLine(DateTime.Now + "\t" + logText);
}
}
}
public virtual void ReportProgress()
{
if (Run.ScanSetCollection == null || Run.ScanSetCollection.ScanSetList.Count == 0)
{
return;
}
var userState = new ScanBasedProgressInfo(Run, Run.CurrentScanSet);
var percentDone = (_datasetCounter + 1) / (float)(DatasetFileNameList.Count()) * 100;
userState.PercentDone = percentDone;
var logText = "Dataset= \t" + Run.DatasetName + "; PercentComplete= \t" + percentDone.ToString("0.0") + "; Total peaks= \t" + _peaksProcessedInLastDataset;
BackgroundWorker?.ReportProgress((int)percentDone, userState);
if (_datasetCounter % NumScansBetweenProgress == 0)
{
Logger.Instance.AddEntry(logText, true);
if (BackgroundWorker == null)
{
Console.WriteLine(DateTime.Now + "\t" + logText);
}
}
}
public virtual void ReportProgress()
{
if (Run.ScanSetCollection == null || Run.ScanSetCollection.ScanSetList.Count == 0)
{
return;
}
var userState = new ScanBasedProgressInfo(Run, Run.CurrentScanSet);
var percentDone = _scanCounter / (float)(Run.ScanSetCollection.ScanSetList.Count) * 100;
userState.PercentDone = percentDone;
var progressMessage = GetProgressMessage(percentDone);
BackgroundWorker?.ReportProgress((int)percentDone, userState);
var reportProgress = _scanCounter % NumScansBetweenProgress == 0 ||
DateTime.UtcNow.Subtract(_lastProgressTime).TotalMinutes > 5 ||
mShowTraceMessages;
if (!reportProgress)
{
return;
}
_lastProgressTime = DateTime.UtcNow;
Logger.Instance.AddEntry(progressMessage, true);
if (BackgroundWorker == null)
{
Console.WriteLine(DateTime.Now + "\t" + progressMessage);
}
}
internal IMSScanBasedWorkflow(DeconToolsParameters parameters, Run run, string outputDirectoryPath = null, BackgroundWorker backgroundWorker = null)
: base(parameters, run, outputDirectoryPath, backgroundWorker)
{
DeconTools.Utilities.Check.Require(run is UIMFRun, "Cannot create workflow. Run is required to be a UIMFRun for this type of workflow");
mCachedProgressMessage = string.Empty;
mCachedUserState = new ScanBasedProgressInfo(Run, new ScanSet(), new IMSScanSet(0));
}
public override void ReportProgress()
{
var uimfRun = (UIMFRun)Run;
if (uimfRun.ScanSetCollection == null || uimfRun.ScanSetCollection.ScanSetList.Count == 0)
{
return;
}
var userstate = new ScanBasedProgressInfo(Run, uimfRun.CurrentScanSet, uimfRun.CurrentIMSScanSet);
var framenum = uimfRun.ScanSetCollection.ScanSetList.IndexOf(uimfRun.CurrentScanSet);
var scanNum = uimfRun.IMSScanSetCollection.ScanSetList.IndexOf(uimfRun.CurrentIMSScanSet);
var scanTotal = uimfRun.IMSScanSetCollection.ScanSetList.Count;
var frameTotal = uimfRun.ScanSetCollection.ScanSetList.Count;
var percentDone = ((double)(framenum) / (double)frameTotal + ((double)scanNum / (double)scanTotal) / (double)frameTotal) * 100;
userstate.PercentDone = (float)percentDone;
var logText = "Scan/Frame= " + Run.GetCurrentScanOrFrame() + "; PercentComplete= " + percentDone.ToString("0.0") + "; AccumlatedFeatures= " + Run.ResultCollection.getTotalIsotopicProfiles();
var numScansBetweenProgress = 1;
var imsScanIsLastInFrame = uimfRun.IMSScanSetCollection.GetLastScanSet() == uimfRun.CurrentIMSScanSet.PrimaryScanNumber;
if (imsScanIsLastInFrame)
{
Logger.Instance.AddEntry(logText, Logger.Instance.OutputFilename);
Console.WriteLine(DateTime.Now + "\t" + logText);
}
if (BackgroundWorker != null && scanNum % numScansBetweenProgress == 0)
{
BackgroundWorker.ReportProgress((int)percentDone, userstate);
}
}
public virtual void ReportProgress()
{
var uimfRun = (UIMFRun)Run;
var imsScanIsLastInFrame = uimfRun.IMSScanSetCollection.GetLastScanSet() == uimfRun.CurrentIMSScanSet.PrimaryScanNumber;
if (imsScanIsLastInFrame ||
string.IsNullOrWhiteSpace(mCachedProgressMessage) ||
DateTime.UtcNow.Subtract(mLastProgress).TotalSeconds >= 3)
{
if (uimfRun.ScanSetCollection == null || uimfRun.ScanSetCollection.ScanSetList.Count == 0)
{
return;
}
mCachedUserState = new ScanBasedProgressInfo(Run, uimfRun.CurrentScanSet, uimfRun.CurrentIMSScanSet);
var frameNum = uimfRun.ScanSetCollection.ScanSetList.IndexOf(uimfRun.CurrentScanSet);
var scanNum = uimfRun.IMSScanSetCollection.ScanSetList.IndexOf(uimfRun.CurrentIMSScanSet);
var scanTotal = uimfRun.IMSScanSetCollection.ScanSetList.Count;
var frameTotal = uimfRun.ScanSetCollection.ScanSetList.Count;
var percentDone = (frameNum / (double)frameTotal + scanNum / (double)scanTotal / frameTotal) * 100;
mCachedUserState.PercentDone = (float)percentDone;
mCachedProgressMessage = GetProgressMessage(percentDone);
mLastProgress = DateTime.UtcNow;
}
if (imsScanIsLastInFrame)
{
Logger.Instance.AddEntry(mCachedProgressMessage, true);
Console.WriteLine(DateTime.Now + "\t" + mCachedProgressMessage);
}
BackgroundWorker?.ReportProgress((int)mCachedUserState.PercentDone, mCachedUserState);
}