public void Correctness_check()
{
int col_length = Columns_length;
Colchar_column_line_class[] columns_copy = Deep_copy_columns();
columns_copy = Colchar_column_line_class.Order_in_standard_way(columns_copy);
for (int indexC = 1; indexC < col_length; indexC++)
{
if (columns_copy[indexC].Equal_in_standard_way(columns_copy[indexC - 1]))
{
throw new Exception("duplicated column charactarization");
}
}
if (!Column_rearrangements_adopted)
{
throw new Exception("column rearrangements are not adopted");
}
}
public int[] Order_columns_in_standard_way_and_get_old_new_index_array()
{
Correctness_check();
Column_rearrangements_adopted = false;
Colchar_column_line_class[] old_columns = Deep_copy_columns();
Columns = Colchar_column_line_class.Order_in_standard_way(Columns);
int columns_length = Columns.Length;
#region Initialize index old new (and fill with -1 entries)
int[] old_new_index_array = new int[columns_length];
for (int indexOld = 0; indexOld < columns_length; indexOld++)
{
old_new_index_array[indexOld] = -1;
}
#endregion
#region Fill index old new
Colchar_column_line_class old_column;
Colchar_column_line_class new_column;
for (int indexOld = 0; indexOld < columns_length; indexOld++)
{
old_column = old_columns[indexOld];
for (int indexNew = 0; indexNew < columns_length; indexNew++)
{
new_column = Columns[indexNew];
if (old_column.Equal_in_standard_way(new_column))
{
old_new_index_array[indexOld] = indexNew;
break;
}
}
}
#endregion
return(old_new_index_array);
}
public void Identify_new_columns_and_add_at_right_site(Colchar_column_line_class[] add_data)
{
Correctness_check();
int old_columns_length = Columns_length;
Colchar_column_line_class[] add_columns;
#region Identify add columns
List <Colchar_column_line_class> add_columns_list = new List <Colchar_column_line_class>();
add_data = Colchar_column_line_class.Order_in_standard_way(add_data);
int add_data_length = add_data.Length;
Colchar_column_line_class add_line;
bool old_columns_contain_new_combination = false;
Colchar_column_line_class old_column_line;
Colchar_column_line_class add_column_line;
for (int indexAdd = 0; indexAdd < add_data_length; indexAdd++)
{
add_line = add_data[indexAdd];
if ((indexAdd == 0) || (!Colchar_column_line_class.Equal_in_standard_way(add_line, add_data[indexAdd - 1])))
{
old_columns_contain_new_combination = false;
for (int indexOld = 0; indexOld < old_columns_length; indexOld++)
{
old_column_line = Columns[indexOld];
if (old_column_line.Equal_in_standard_way(add_line))
{
old_columns_contain_new_combination = true;
break;
}
}
if (!old_columns_contain_new_combination)
{
add_column_line = new Colchar_column_line_class(add_line.EntryType, add_line.Timepoint, add_line.SampleName);
add_columns_list.Add(add_column_line);
}
}
}
add_columns = add_columns_list.ToArray();
#endregion
#region Add add columns at right site
int add_columns_length = add_columns.Length;
int new_columns_length = add_columns_length + old_columns_length;
Colchar_column_line_class[] new_columns = new Colchar_column_line_class[new_columns_length];
int indexNew = -1;
for (int indexOld = 0; indexOld < old_columns_length; indexOld++)
{
indexNew++;
new_columns[indexNew] = this.Columns[indexOld].Deep_copy();
}
for (int indexAdd = 0; indexAdd < add_columns_length; indexAdd++)
{
indexNew++;
new_columns[indexNew] = add_columns[indexAdd].Deep_copy();
}
Columns = new_columns;
#endregion
Correctness_check();
}