public CondorSubmitFile(IEnumerable<DtaFile> dtaFiles, UserModFile userModFile, IEnumerable<DatabaseFile> dbFiles)
: base(Path.GetTempFileName())
{
Requirements = new List<string> {"(Arch == \"x86_64\")", "(TARGET.Name =!= LastMatchName1)", "(OpSys == \"LINUX\")", "(Disk > 500000)"};
UserModFile = userModFile;
DatabaseFiles = new List<DatabaseFile>(dbFiles);
DtaFiles = new List<DtaFile>(dtaFiles);
foreach (DtaFile dta in DtaFiles)
{
dta.UserModFile = userModFile;
}
}
public CondorSubmitFile(IEnumerable <DtaFile> dtaFiles, UserModFile userModFile, IEnumerable <DatabaseFile> dbFiles)
: base(Path.GetTempFileName())
{
Requirements = new List <string> {
"(Arch == \"x86_64\")", "(TARGET.Name =!= LastMatchName1)", "(OpSys == \"LINUX\")", "(Disk > 500000)"
};
UserModFile = userModFile;
DatabaseFiles = new List <DatabaseFile>(dbFiles);
DtaFiles = new List <DtaFile>(dtaFiles);
foreach (DtaFile dta in DtaFiles)
{
dta.UserModFile = userModFile;
}
}
private async void Submit()
{
try
{
bool splitSpectra = checkBox1.Checked;
int spectraToSplit = (int)numericUpDown1.Value;
submitToolStripMenuItem.Enabled = false;
dataGridView1.Enabled = false;
string jobName = textBox1.Text;
if (DtaFiles.Count == 0)
{
throw new ArgumentNullException("DTA Files", "Please supply at least one DTA file for the submission");
}
if (string.IsNullOrWhiteSpace(jobName))
{
throw new ArgumentNullException("Job Name", "Please supply a job name for the submission");
}
DatabaseFile[] dataBases = checkedListBox1.CheckedItems.Cast<DatabaseFile>().ToArray();
if (dataBases.Length == 0)
{
throw new ArgumentNullException("Database", "Please selected at least one database for the submission");
}
UserModFile userModFile = null;
string userModFilePath = textBox2.Text;
if (!string.IsNullOrWhiteSpace(userModFilePath))
{
if (!System.IO.File.Exists(userModFilePath))
{
throw new FileNotFoundException("Unable to locate user mod file", userModFilePath);
}
userModFile = new UserModFile(userModFilePath);
}
string remoteJobDirectory = _connection.CreateDirectory(_connection.CondorFolder + jobName);
if (userModFile != null)
{
SetStatusLabel("Uploading User Mod File...");
await _connection.PutFileAsync(userModFile, remoteJobDirectory);
}
List<DtaFile> dtaFiles = new List<DtaFile>();
if (splitSpectra)
{
SetStatusLabel("Splitting Dta Files to contain " + spectraToSplit + " spectra each...");
Task t = new Task(() =>
{
foreach (DtaFile dtaFile in DtaFiles.Distinct())
{
dtaFiles.AddRange(dtaFile.Split(spectraToSplit));
}
});
t.Start();
await t;
}
else
{
dtaFiles = DtaFiles.ToList();
}
SetStatusLabel("Uploading Files to " + remoteJobDirectory + "...");
await _connection.PutFilesAsync(dtaFiles.Distinct(), remoteJobDirectory);
SetStatusLabel("Uploading Submit File...");
CondorSubmitFile submitFile = new CondorSubmitFile(dtaFiles, userModFile, dataBases);
submitFile.WriteToDisk();
await _connection.PutFileAsync(submitFile, remoteJobDirectory, "submitFile.condor");
if (splitSpectra)
{
foreach (DtaFile dtaFile in dtaFiles)
{
System.IO.File.Delete(dtaFile.FilePath);
}
}
System.IO.File.Delete(submitFile.FilePath);
string result = _connection.RunSubmission(remoteJobDirectory, "submitFile.condor");
SetStatusLabel(result.Replace("\n"," "));
}
catch (Exception e)
{
MessageBox.Show(e.Message, "Error Submitting Job", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
SetStatusLabel("Error");
}
finally
{
dataGridView1.Enabled = true;
toolStripStatusLabel1.Text = "";
submitToolStripMenuItem.Enabled = true;
UpdateProgress(0);
}
}
private async void Submit()
{
try
{
bool splitSpectra = checkBox1.Checked;
int spectraToSplit = (int)numericUpDown1.Value;
submitToolStripMenuItem.Enabled = false;
dataGridView1.Enabled = false;
string jobName = textBox1.Text;
if (DtaFiles.Count == 0)
{
throw new ArgumentNullException("DTA Files", "Please supply at least one DTA file for the submission");
}
if (string.IsNullOrWhiteSpace(jobName))
{
throw new ArgumentNullException("Job Name", "Please supply a job name for the submission");
}
DatabaseFile[] dataBases = checkedListBox1.CheckedItems.Cast <DatabaseFile>().ToArray();
if (dataBases.Length == 0)
{
throw new ArgumentNullException("Database", "Please selected at least one database for the submission");
}
UserModFile userModFile = null;
string userModFilePath = textBox2.Text;
if (!string.IsNullOrWhiteSpace(userModFilePath))
{
if (!System.IO.File.Exists(userModFilePath))
{
throw new FileNotFoundException("Unable to locate user mod file", userModFilePath);
}
userModFile = new UserModFile(userModFilePath);
}
string remoteJobDirectory = _connection.CreateDirectory(_connection.CondorFolder + jobName);
if (userModFile != null)
{
SetStatusLabel("Uploading User Mod File...");
await _connection.PutFileAsync(userModFile, remoteJobDirectory);
}
List <DtaFile> dtaFiles = new List <DtaFile>();
if (splitSpectra)
{
SetStatusLabel("Splitting Dta Files to contain " + spectraToSplit + " spectra each...");
Task t = new Task(() =>
{
foreach (DtaFile dtaFile in DtaFiles.Distinct())
{
dtaFiles.AddRange(dtaFile.Split(spectraToSplit));
}
});
t.Start();
await t;
}
else
{
dtaFiles = DtaFiles.ToList();
}
SetStatusLabel("Uploading Files to " + remoteJobDirectory + "...");
await _connection.PutFilesAsync(dtaFiles.Distinct(), remoteJobDirectory);
SetStatusLabel("Uploading Submit File...");
CondorSubmitFile submitFile = new CondorSubmitFile(dtaFiles, userModFile, dataBases);
submitFile.WriteToDisk();
await _connection.PutFileAsync(submitFile, remoteJobDirectory, "submitFile.condor");
if (splitSpectra)
{
foreach (DtaFile dtaFile in dtaFiles)
{
System.IO.File.Delete(dtaFile.FilePath);
}
}
System.IO.File.Delete(submitFile.FilePath);
string result = _connection.RunSubmission(remoteJobDirectory, "submitFile.condor");
SetStatusLabel(result.Replace("\n", " "));
}
catch (Exception e)
{
MessageBox.Show(e.Message, "Error Submitting Job", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
SetStatusLabel("Error");
}
finally
{
dataGridView1.Enabled = true;
toolStripStatusLabel1.Text = "";
submitToolStripMenuItem.Enabled = true;
UpdateProgress(0);
}
}
