public ISmallPedigreeCheckpoint GetSmallPedigreeCheckpoint()
{
if (!_canvasWorkerFactory.RunCnvDetection())
{
return(new NullSmallPedigreeCheckpoint(_logger));
}
CanvasSmallPedigreeWrapper wrapper = new CanvasSmallPedigreeWrapper(_workManager, _logger, _canvasWorkerFactory.GetCanvasExe(),
GetRuntimeExecutable(), _canvasWorkerFactory.GetAnnotationFileProvider(),
_canvasWorkerFactory.GetCanvasSingleSampleInputCommandLineBuilder(_canvasWorkerFactory.GetAnnotationFileProvider()),
new CanvasPloidyVcfCreator(_canvasWorkerFactory.GetPloidyCorrector()));
return(new SmallPedigreeCheckpoint(wrapper, Move, Load));
}
public SmallPedigreeCheckpoint(CanvasSmallPedigreeWrapper wrapper, Move move, Load load)
{
_wrapper = wrapper;
_move = move;
_load = load;
}
