private void ParsePeptidesBlock(List <string> argData)
{
_PeptideDict = new Dictionary <int, List <Peptides> >();
int PreviousQueryNum = 1;
List <string> tmpLines = new List <string>();
foreach (string line in argData)
{
System.Text.RegularExpressions.Match QueryNumMatch = System.Text.RegularExpressions.Regex.Match(line.Split('=')[0].Split('_')[0], "\\d+");
int QueryNum = Convert.ToInt32(QueryNumMatch.Value);
if (PreviousQueryNum != QueryNum)
{
int PreviousPeptideNumber = 1;
List <string> PeptideTmp = new List <string>();
//Parse in the same query
foreach (string tmpLine in tmpLines)
{
//Parse different peptide
int PeptideNum = Convert.ToInt32(tmpLine.Split('=')[0].Split('_')[1].Substring(1));
if (PreviousPeptideNumber != PeptideNum)
{
string PeptideTerm = "";
string Primary_NL = "";
Peptides NewQ = null;
foreach (string PeptideLine in PeptideTmp)
{
if (PeptideLine.Contains("terms"))
{
PeptideTerm = PeptideLine.Split('=')[1];
}
else if (PeptideLine.Contains("primary_nl"))
{
Primary_NL = PeptideLine.Split('=')[1];
}
else
{
NewQ = new Peptides(QueryNum, PeptideLine, PeptideTerm, Primary_NL, _SummaryDict[QueryNum]);
}
}
if (!_PeptideDict.ContainsKey(QueryNum))
{
_PeptideDict.Add(QueryNum, new List <Peptides>());
}
_PeptideDict[QueryNum].Add(NewQ);
PeptideTmp.Clear();
PreviousPeptideNumber = PeptideNum;
}
PeptideTmp.Add(tmpLine); // add line to store the same peptide
}
tmpLines.Clear();
PreviousQueryNum = QueryNum;
}
tmpLines.Add(line); //Add line to store the same query number
}
}
private void ParsePeptidesBlock(List<string> argData)
{
_PeptideDict = new Dictionary<int, List<Peptides>>();
int PreviousQueryNum = 1;
List<string> tmpLines = new List<string>();
foreach (string line in argData)
{
System.Text.RegularExpressions.Match QueryNumMatch = System.Text.RegularExpressions.Regex.Match(line.Split('=')[0].Split('_')[0], "\\d+");
int QueryNum = Convert.ToInt32(QueryNumMatch.Value);
if (PreviousQueryNum != QueryNum)
{
int PreviousPeptideNumber = 1;
List<string> PeptideTmp = new List<string>();
//Parse in the same query
foreach (string tmpLine in tmpLines)
{
//Parse different peptide
int PeptideNum = Convert.ToInt32(tmpLine.Split('=')[0].Split('_')[1].Substring(1));
if (PreviousPeptideNumber != PeptideNum)
{
string PeptideTerm="";
string Primary_NL="";
Peptides NewQ = null;
foreach (string PeptideLine in PeptideTmp)
{
if(PeptideLine.Contains("terms"))
{
PeptideTerm = PeptideLine.Split('=')[1];
}
else if(PeptideLine.Contains("primary_nl"))
{
Primary_NL = PeptideLine.Split('=')[1];
}
else
{
NewQ = new Peptides(QueryNum,PeptideLine,PeptideTerm,Primary_NL, _SummaryDict[QueryNum]);
}
}
if (!_PeptideDict.ContainsKey(QueryNum))
{
_PeptideDict.Add(QueryNum, new List<Peptides>());
}
_PeptideDict[QueryNum].Add(NewQ);
PeptideTmp.Clear();
PreviousPeptideNumber = PeptideNum;
}
PeptideTmp.Add(tmpLine); // add line to store the same peptide
}
tmpLines.Clear();
PreviousQueryNum = QueryNum;
}
tmpLines.Add(line); //Add line to store the same query number
}
}
