public GlycanStructure(Glycan argGlycan, MSPoint argPeak)
{
_tree = new GlycanTreeNode(argGlycan.GlycanType, _nextID);
_nextID++;
_y1 = argPeak;
_IUPAC = _tree.GetIUPACString();
}
public static float GetGlycanAVGMass(Glycan.Type argType)
{
float Mass = 0.0f;
if (argType == Glycan.Type.HexNAc)
{
Mass = _HexNAcAVG;
}
else if (argType == Glycan.Type.Hex)
{
Mass = _HexAVG;
}
else if (argType == Glycan.Type.DeHex)
{
Mass = _DeHexAVG;
}
else if (argType == Glycan.Type.NeuAc)
{
Mass = _NeuAcAVG;
}
else
{
Mass = _NeuGcAVG;
}
return Mass;
}
public GlycanStructure(Glycan argGlycan, float argY1)
{
_tree = new GlycanTreeNode(argGlycan.GlycanType, _nextID);
_nextID++;
_y1 = new MSPoint(argY1, 0.0f);
_IUPAC = _tree.GetIUPACString();
}
public static float GetGlycanAVGMasswithCharge(Glycan.Type argType, int argCharge)
{
//
// m/z = (mass + Proton * charge) / charge
// => mass/charge + Proton
//
return (float)((GetGlycanAVGMass(argType) + MassLib.Atoms.ProtonMass* argCharge) / argCharge);
}
public int NoOfGlycan(Glycan argGlycan)
{
switch (argGlycan.GlycanType)
{
case Glycan.Type.HexNAc:
return(NoOfHex);
case Glycan.Type.NeuAc:
return(NoOfNeuAc);
case Glycan.Type.NeuGc:
return(NoOfNeuGc);
case Glycan.Type.DeHex:
return(NoOfDeHex);
default:
return(NoOfHex);
}
}
//Constrator
public GlycanStructure(Glycan argGlycan)
{
new GlycanStructure(argGlycan, 0.0f);
}
public Image GlycanCartoon(Glycan.Type argType)
{
Bitmap glycan = new Bitmap(11 ,11 );
Graphics g = Graphics.FromImage(glycan);
Brush SolidBrush;
Pen Linear = new Pen(Color.Black, 1.0f * _ScaleFactor);
Point[] loc;
switch (argType)
{
case Glycan.Type.DeHex:
SolidBrush = new SolidBrush(Color.FromArgb(255,0,0) );
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
loc = new Point[] { new Point(0, 10 ), new Point(5 , 0), new Point(10 , 10 ) };
g.FillPolygon(SolidBrush, loc);
g.DrawPolygon(Linear, loc);
break;
case Glycan.Type.Gal:
SolidBrush = new SolidBrush(Color.FromArgb(255, 255, 0));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
g.FillEllipse(SolidBrush, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
g.DrawEllipse(Linear, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
break;
case Glycan.Type.HexNAc:
SolidBrush = new SolidBrush(Color.FromArgb(0, 0, 250));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
g.FillRectangle(SolidBrush, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
g.DrawRectangle(Linear, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
break;
case Glycan.Type.Man:
SolidBrush = new SolidBrush(Color.FromArgb(0, 200, 50));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
g.FillEllipse(SolidBrush, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
g.DrawEllipse(Linear, 0, 0, 10 * _ScaleFactor, 10 * _ScaleFactor);
break;
case Glycan.Type.NeuAc:
SolidBrush = new SolidBrush(Color.FromArgb(200, 0, 200));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
loc = new Point[] { new Point(0, 5 ), new Point(5 , 10 ), new Point(10 , 5 ), new Point(5 , 0) };
g.FillPolygon(SolidBrush, loc);
g.DrawPolygon(Linear, loc);
break;
case Glycan.Type.NeuGc:
SolidBrush = new SolidBrush(Color.FromArgb(233, 255, 255));
if (_isBW)
{
SolidBrush = new SolidBrush(Color.White);
}
loc = new Point[] { new Point(0, 5 ), new Point(5 , 10 ), new Point(10 , 5 ), new Point(5 , 0) };
g.FillPolygon(SolidBrush, loc);
g.DrawPolygon(Linear, loc);
break;
}
return glycan;
}
public GlycanTreeForDrawer(Glycan.Type argType)
{
_root = argType;
_child = new List<GlycanTreeForDrawer>();
}