public void TestImportAndValidateSingleFile()
{
const string fileName = "bsbm_1M.nt";
const string storeName = "ImportAndValidate";
if (_storeManager.DoesStoreExist(storeName))
{
_storeManager.DeleteStore(storeName);
while (_storeManager.DoesStoreExist(storeName))
{
Thread.Sleep(10);
}
}
using (var store = _storeManager.CreateStore(storeName))
{
var jobId = Guid.NewGuid();
using (var triplesStream = File.OpenRead(fileName))
{
store.Import(jobId, triplesStream);
}
store.Commit(jobId);
}
using(var triplesStream = File.OpenRead(fileName))
{
using (var store = _storeManager.OpenStore(storeName))
{
var validatorSink = new ValidatorSink(store);
var parser = new NTriplesParser();
parser.Parse(triplesStream, validatorSink, Constants.DefaultGraphUri);
Console.WriteLine("Validated {0} triples in store", validatorSink.ValidationCount);
}
}
}
public void TestBasicNtriples()
{
var ntp = new NTriplesParser();
using (var fs = new FileStream(TestPaths.DataPath+"simple.txt", FileMode.Open))
{
ntp.Parse(fs, new NoopParser(), Constants.DefaultGraphUri);
}
}
public void TestBrightstarParser()
{
var t = new Stopwatch();
t.Start();
using (var fs = new FileStream("BSBM_370k.nt", FileMode.Open))
{
var parser = new NTriplesParser();
parser.Parse(fs, new NoopParser(), Constants.DefaultGraphUri);
}
t.Stop();
Console.WriteLine("Time for Brightstar Parser is " + t.ElapsedMilliseconds);
}
internal TransactionPreconditionsFailedException(string failedTriples)
: base("Transaction preconditions were not met.")
{
FailedPreconditions = failedTriples;
try
{
_invalidSubjects = new List<string>();
var p = new NTriplesParser();
using (var rdr = new StringReader(failedTriples))
{
p.Parse(rdr, this, Constants.DefaultGraphUri);
}
}
catch
{
// Ignore any errors when trying to parse the failed preconditions
}
}
public void TestImportEscaping()
{
var parser = new NTriplesParser();
var sink = new LoggingTripleSink();
using (
var stream = new FileStream(TestPaths.DataPath + "escaping.nt", FileMode.Open, FileAccess.Read,
FileShare.ReadWrite))
{
parser.Parse(stream, sink, "http://example.org/g");
}
Assert.That(sink.Triples, Has.Count.EqualTo(8));
Assert.That(sink.Triples, Has.Some.Property("Object").EqualTo("simple literal"));
Assert.That(sink.Triples, Has.Some.Property("Object").EqualTo("backslash:\\"));
Assert.That(sink.Triples, Has.Some.Property("Object").EqualTo("dquote:\""));
Assert.That(sink.Triples, Has.Some.Property("Object").EqualTo("newline:\n"));
Assert.That(sink.Triples, Has.Some.Property("Object").EqualTo("tab:\t"));
Assert.That(sink.Triples, Has.Some.Property("Object").EqualTo("\u00E9"));
Assert.That(sink.Triples, Has.Some.Property("Object").EqualTo("\u20AC"));
}
public void Run()
{
try
{
var jobGuid = Guid.Parse(_jobId);
using (_importStream = _importSource.OpenRead())
{
var parser = new NTriplesParser();
_importTripleSink = new StoreTripleSink(_worker.WriteStore, jobGuid,
Configuration.TransactionFlushTripleCount);
parser.Parse(_importStream, this, _graphUri);
_importStream.Close();
}
_worker.WriteStore.Commit(jobGuid);
_worker.InvalidateReadStore();
}
catch (RdfParserException parserException)
{
Logging.LogError(
BrightstarEventId.ImportDataError,
"Encountered parser error : {0}", parserException);
_statusCallback(_jobId,
String.Format("Import failed due to parser error: {0}", parserException));
Errors = true;
ErrorMessage = parserException.HaveLineNumber
? String.Format("Parser error at line {0}: {1}", parserException.LineNumber,
parserException.Message)
: String.Format("Parser error: {0}", parserException.Message);
}
catch (Exception ex)
{
Logging.LogError(BrightstarEventId.JobProcessingError,
"Error processing import job on source " + _importSource + ". Error Message: " +
ex.Message + " Stack trace: " + ex.StackTrace);
throw;
}
}
public void TestBrightstarParserStillFaster()
{
var t = new Stopwatch();
t.Start();
using (var fs = new FileStream(TestPaths.DataPath + "BSBM_370k.nt", FileMode.Open))
{
var parser = new NTriplesParser();
parser.Parse(fs, new NoopParser(), Constants.DefaultGraphUri);
}
t.Stop();
Console.WriteLine("Time for Brightstar Parser is " + t.ElapsedMilliseconds);
var t2 = new Stopwatch();
t2.Start();
using (var fs = new FileStream(TestPaths.DataPath + "BSBM_370k.nt", FileMode.Open))
{
var parser = new VDS.RDF.Parsing.NTriplesParser();
parser.Load(new NoopParser(), new StreamReader(fs));
}
t2.Stop();
Console.WriteLine("Time for dotNetRDF Parser is " + t2.ElapsedMilliseconds);
Assert.That(t.ElapsedMilliseconds, Is.LessThan(t2.ElapsedMilliseconds));
}
public void TestExportWhileWriting()
{
const int firstBatchSize = 50000;
var storeName = Guid.NewGuid().ToString();
var client = GetClient();
client.CreateStore(storeName);
var batch1 = MakeTriples(0, firstBatchSize);
var batch2 = MakeTriples(firstBatchSize, firstBatchSize+1000);
var batch3 = MakeTriples(firstBatchSize+1000, firstBatchSize+2000);
var batch4 = MakeTriples(firstBatchSize+2000, firstBatchSize+3000);
// Verify batch size
var p = new NTriplesParser();
var counterSink = new CounterTripleSink();
p.Parse(new StringReader(batch1), counterSink, Constants.DefaultGraphUri);
Assert.AreEqual(firstBatchSize, counterSink.Count);
var jobInfo = client.ExecuteTransaction(storeName, new UpdateTransactionData {InsertData = batch1});
Assert.AreEqual(true, jobInfo.JobCompletedOk);
// Second export with parallel store writes
var exportJobInfo = client.StartExport(storeName, storeName + "_export.nt", label:"Export Data");
Assert.That(exportJobInfo.Label, Is.EqualTo("Export Data"));
jobInfo = client.ExecuteTransaction(storeName, new UpdateTransactionData{InsertData = batch2});
Assert.AreEqual(true, jobInfo.JobCompletedOk);
exportJobInfo = client.GetJobInfo(storeName, exportJobInfo.JobId);
if (exportJobInfo.JobCompletedWithErrors)
{
Assert.Fail("Export job completed with errors: {0} : {1}", exportJobInfo.StatusMessage, exportJobInfo.ExceptionInfo);
}
if (exportJobInfo.JobCompletedOk)
{
Assert.Inconclusive("Export job completed before end of first concurrent import job.");
}
Assert.That(exportJobInfo.Label, Is.EqualTo("Export Data"));
jobInfo = client.ExecuteTransaction(storeName, new UpdateTransactionData{InsertData= batch3});
Assert.AreEqual(true, jobInfo.JobCompletedOk);
jobInfo = client.ExecuteTransaction(storeName, new UpdateTransactionData{InsertData = batch4});
Assert.AreEqual(true, jobInfo.JobCompletedOk);
while (!exportJobInfo.JobCompletedOk)
{
Assert.IsFalse(exportJobInfo.JobCompletedWithErrors);
Thread.Sleep(1000);
exportJobInfo = client.GetJobInfo(storeName, exportJobInfo.JobId);
}
var exportFile = new FileInfo(Path.Combine(Configuration.StoreLocation, "import", storeName + "_export.nt"));
Assert.IsTrue(exportFile.Exists);
var lineCount = File.ReadAllLines(exportFile.FullName).Count(x => !String.IsNullOrEmpty(x));
Assert.AreEqual(firstBatchSize, lineCount);
}
public void Run()
{
var p = new NTriplesParser();
using (var fileReader = new StreamReader(_srcPath))
{
p.Parse(fileReader, this, Constants.DefaultGraphUri);
}
}
public override void Run()
{
try
{
StoreWorker.TransactionLog.LogStartTransaction(this);
var writeStore = StoreWorker.WriteStore;
// process preconditions
Logging.LogInfo("UpdateTransaction {0} - processing preconditions", JobId);
try
{
var preconditionSink = new PreconditionSink(writeStore);
var parser = new NTriplesParser();
parser.Parse(new StringReader(_preconditions), preconditionSink, _defaultGraphUri);
if (preconditionSink.FailedPreconditionCount > 0)
{
throw new PreconditionFailedException(preconditionSink.FailedPreconditionCount, preconditionSink.GetFailedPreconditions());
}
}
catch (RdfParserException parserException)
{
throw new BrightstarClientException("Syntax error in preconditions.", parserException);
}
// process deletes
Logging.LogInfo("UpdateTransaction {0} - processing deletes", JobId);
try
{
var delSink = new DeletePatternSink(writeStore);
var parser = new NTriplesParser();
parser.Parse(new StringReader(_deletePatterns), delSink, _defaultGraphUri);
}
catch (RdfParserException parserException)
{
throw new BrightstarClientException("Syntax error in delete patterns.", parserException);
}
try
{
// insert data
Logging.LogInfo("UpdateTransaction {0} - processing inserts", JobId);
var parser = new NTriplesParser();
parser.Parse(new StringReader(_insertData),
new StoreTripleSink(writeStore, JobId, Configuration.TransactionFlushTripleCount),
_defaultGraphUri);
}
catch (RdfParserException parserException)
{
throw new BrightstarClientException("Syntax error in triples to add.", parserException);
}
// commit changes
Logging.LogInfo("UpdateTransaction {0} - committing changes", JobId);
writeStore.Commit(JobId);
// change read store
Logging.LogInfo("UpdateTransaction {0} - invalidating read store", JobId);
StoreWorker.InvalidateReadStore();
// log txn completed
Logging.LogInfo("UpdateTransaction {0} - logging completion", JobId);
StoreWorker.TransactionLog.LogEndSuccessfulTransaction(this);
Logging.LogInfo("UpdateTransaction {0} - done", JobId);
}
catch (PreconditionFailedException ex)
{
StoreWorker.TransactionLog.LogEndFailedTransaction(this);
Logging.LogInfo("Preconditions failed in UpdateTransaction ({0}): Count={1}, Triples={2}", JobId, ex.FailureCount, ex.FailedTriples);
throw;
}
catch (BrightstarClientException ex)
{
StoreWorker.TransactionLog.LogEndFailedTransaction(this);
Logging.LogError(BrightstarEventId.TransactionClientError,
"Client error reported in UpdateTransaction ({0}): {1}", JobId, ex.InnerException.ToString());
throw;
}
catch (Exception ex)
{
StoreWorker.TransactionLog.LogEndFailedTransaction(this);
Logging.LogError(BrightstarEventId.TransactionServerError,
"Unexpected exception caught in UpdateTransaction ({0}): {1}",JobId, ex);
throw;
}
}
public void TestBackslashEscape()
{
const string ntriples = @"<http://example.org/s> <http://example.org/p1> ""c:\\users""
<http://example.org/s> <http://example.org/p2> ""\\users\\tom""";
var parser = new NTriplesParser();
var sink = new LoggingTripleSink();
parser.Parse(new StringReader(ntriples), sink, "http://example.org/g" );
Assert.That(sink.Triples, Has.Count.EqualTo(2));
var triple1 = sink.Triples.FirstOrDefault(t => t.Predicate.Equals("http://example.org/p1"));
var triple2 = sink.Triples.FirstOrDefault(t => t.Predicate.Equals("http://example.org/p2"));
Assert.That(triple1, Is.Not.Null);
Assert.That(triple1.IsLiteral);
Assert.That(triple1.Object, Is.EqualTo(@"c:\users"));
Assert.That(triple2, Is.Not.Null);
Assert.That(triple2.IsLiteral);
Assert.That(triple2.Object, Is.EqualTo(@"\users\tom"));
}
public void TestBasicNQuads()
{
var ntp = new NTriplesParser();
ntp.Parse(new FileStream(TestPaths.DataPath+"nquads.txt", FileMode.Open), new NoopParser(), Constants.DefaultGraphUri);
}
/// <summary>
/// Imports triples from the stream provided
/// </summary>
/// <param name="store">The store to import triples into</param>
/// <param name="jobId">The GUID identifier for the import job</param>
/// <param name="triples">The stream to read the triples from</param>
/// <param name="graphUri">The URI of the graph to import the triples into, or null to import into the default graph</param>
public static void Import(this IStore store, Guid jobId, Stream triples, Uri graphUri = null)
{
var tripleParser = new NTriplesParser();
tripleParser.Parse(triples, new StoreTripleSink(store, jobId, 500000),
graphUri == null ? Constants.DefaultGraphUri : graphUri.ToString());
}
public void TestExportWhileWriting()
{
const int firstBatchSize = 50000;
var storeName = Guid.NewGuid().ToString();
var client = GetClient();
client.CreateStore(storeName);
var batch1 = MakeTriples(0, firstBatchSize);
var batch2 = MakeTriples(firstBatchSize, firstBatchSize+1000);
var batch3 = MakeTriples(firstBatchSize+1000, firstBatchSize+2000);
var batch4 = MakeTriples(firstBatchSize+2000, firstBatchSize+3000);
// Verify batch size
var p = new NTriplesParser();
var counterSink = new CounterTripleSink();
p.Parse(new StringReader(batch1), counterSink, Constants.DefaultGraphUri);
Assert.AreEqual(firstBatchSize, counterSink.Count);
var jobInfo = client.ExecuteTransaction(storeName, new UpdateTransactionData
{
ExistencePreconditions = String.Empty,
DeletePatterns = String.Empty,
InsertData = batch1
});
jobInfo = WaitForJob(jobInfo, client, storeName);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
// Second export with parallel store writes
var exportJobInfo = client.StartExport(storeName, storeName + "_export.nt");
jobInfo = client.ExecuteTransaction(storeName,
new UpdateTransactionData
{
ExistencePreconditions = null,
DeletePatterns = null,
InsertData = batch2
});
jobInfo = WaitForJob(jobInfo, client, storeName);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
exportJobInfo = client.GetJobInfo(storeName, exportJobInfo.JobId);
if (exportJobInfo.JobCompletedWithErrors)
{
Assert.Fail("Export job completed with errors: {0} : {1}", exportJobInfo.StatusMessage, exportJobInfo.ExceptionInfo);
}
if (exportJobInfo.JobCompletedOk)
{
Assert.Inconclusive("Export job completed before end of first concurrent import job.");
}
jobInfo = client.ExecuteTransaction(storeName, new UpdateTransactionData{InsertData= batch3});
jobInfo = WaitForJob(jobInfo, client, storeName);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
jobInfo = client.ExecuteTransaction(storeName, new UpdateTransactionData{InsertData = batch4});
jobInfo = WaitForJob(jobInfo, client, storeName);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
exportJobInfo = WaitForJob(exportJobInfo, client, storeName);
Assert.That(exportJobInfo.JobCompletedOk);
var exportFile = new FileInfo("c:\\brightstar\\import\\" + storeName + "_export.nt");
Assert.IsTrue(exportFile.Exists);
var lineCount = File.ReadAllLines(exportFile.FullName).Count(x => !String.IsNullOrEmpty(x));
Assert.AreEqual(firstBatchSize, lineCount);
}
public void TestExportWhileWriting()
{
var storeName = Guid.NewGuid().ToString();
var client = GetClient();
client.CreateStore(storeName);
var batch1 = MakeTriples(0, 50000);
var batch2 = MakeTriples(50000, 51000);
var batch3 = MakeTriples(51000, 52000);
var batch4 = MakeTriples(52000, 53000);
// Verify batch size
var p = new NTriplesParser();
var counterSink = new CounterTripleSink();
p.Parse(new StringReader(batch1), counterSink, Constants.DefaultGraphUri);
Assert.AreEqual(50000, counterSink.Count);
var jobInfo = client.ExecuteTransaction(storeName, String.Empty, String.Empty, batch1);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
// Second export with parallel store writes
var exportJobInfo = client.StartExport(storeName, storeName + "_export.nt");
jobInfo = client.ExecuteTransaction(storeName, null, null, batch2);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
exportJobInfo = client.GetJobInfo(storeName, exportJobInfo.JobId);
Assert.IsTrue(exportJobInfo.JobStarted, "Test inconclusive - export job completed before end of first concurrent import job."); // This is just to check that the export is still running while at least one commit occurs
jobInfo = client.ExecuteTransaction(storeName, null, null, batch3);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
jobInfo = client.ExecuteTransaction(storeName, null, null, batch4);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
while (!exportJobInfo.JobCompletedOk)
{
Assert.IsFalse(exportJobInfo.JobCompletedWithErrors);
Thread.Sleep(1000);
exportJobInfo = client.GetJobInfo(storeName, exportJobInfo.JobId);
}
var exportFile = new FileInfo("c:\\brightstar\\import\\" + storeName + "_export.nt");
Assert.IsTrue(exportFile.Exists);
var lineCount = File.ReadAllLines(exportFile.FullName).Where(x => !String.IsNullOrEmpty(x)).Count();
Assert.AreEqual(50000, lineCount);
}
public void TestExportWhileWriting()
{
int firstBatchSize = 50000;
var storeName = Guid.NewGuid().ToString();
var client = GetClient();
client.CreateStore(storeName);
var batch1 = MakeTriples(0, firstBatchSize);
var batch2 = MakeTriples(firstBatchSize, firstBatchSize+1000);
var batch3 = MakeTriples(firstBatchSize+1000, firstBatchSize+2000);
var batch4 = MakeTriples(firstBatchSize+2000, firstBatchSize+3000);
// Verify batch size
var p = new NTriplesParser();
var counterSink = new CounterTripleSink();
p.Parse(new StringReader(batch1), counterSink, Constants.DefaultGraphUri);
Assert.AreEqual(firstBatchSize, counterSink.Count);
var jobInfo = client.ExecuteTransaction(storeName, String.Empty, String.Empty, batch1);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
// Second export with parallel store writes
var exportJobInfo = client.StartExport(storeName, storeName + "_export.nt");
jobInfo = client.ExecuteTransaction(storeName, null, null, batch2);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
exportJobInfo = client.GetJobInfo(storeName, exportJobInfo.JobId);
if (exportJobInfo.JobCompletedWithErrors)
{
Assert.Fail("Export job completed with errors: {0} : {1}", exportJobInfo.StatusMessage, exportJobInfo.ExceptionInfo);
}
if (exportJobInfo.JobCompletedOk)
{
Assert.Inconclusive("Export job completed before end of first concurrent import job.");
}
jobInfo = client.ExecuteTransaction(storeName, null, null, batch3);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
jobInfo = client.ExecuteTransaction(storeName, null, null, batch4);
Assert.AreEqual(true, jobInfo.JobCompletedOk);
while (!exportJobInfo.JobCompletedOk)
{
Assert.IsFalse(exportJobInfo.JobCompletedWithErrors);
Thread.Sleep(1000);
exportJobInfo = client.GetJobInfo(storeName, exportJobInfo.JobId);
}
FileInfo exportFile;
if (client is BrightstarRestClient)
{
exportFile = new FileInfo("c:\\brightstar\\import\\" + storeName + "_export.nt");
}
else
{
exportFile = new FileInfo("brightstar\\import\\" + storeName + "_export.nt");
}
Assert.IsTrue(exportFile.Exists);
var lineCount = File.ReadAllLines(exportFile.FullName).Where(x => !String.IsNullOrEmpty(x)).Count();
Assert.AreEqual(firstBatchSize, lineCount);
}
