Esempio n. 1
0
        private IList<UserControl> UserControls = new List<UserControl>(); // The Usercontrols at each step.

        /// <summary>
        /// Load the UserControls
        /// </summary>
        public MainWindow()
        {
            InitializeComponent();
            // Create Facet Categories
            Pivot.CreateFacetCategories(Up);
            // Set the default BLAST parameters.
            Up.WebServerPort = 8085;
            Up.BlastUseBrowserProxy = true;
            Up.BlastMaxNumHits = 5;
            Up.BlastMaxEvalue = 1.0e-20;
            Up.BlastMinPercentIdentity = 80.0;
            Up.BlastMinPercentQueryCoverage = 40.0;
            Up.QuerySequences = new List<ISequence>();
            Up.Log = "";
            CurrentStep = 0; // Start at Step 0.
            // Load the UserControls for each step.
            UserControl0 uc0 = new UserControl0(Up);
            UserControls.Add(uc0);
            UserControl9 uc9 = new UserControl9(Up);
            UserControls.Add(uc9);

            strVersion.Text = System.Reflection.Assembly.GetExecutingAssembly().GetName().Version.ToString();
            Console.WriteLine(System.Reflection.Assembly.GetExecutingAssembly().GetName().Version.ToString());
        }
Esempio n. 2
0
 /// <summary>
 /// Run task for a particular step. 
 /// </summary>
 /// <param name="task"></param>
 /// <returns></returns>
 private void RunTask(string task)
 {
     bool res = false;
     switch (task)
     {
         case "UserControl0":
             break;
         case "UserControl1":
             Util.SetupDirectories(Up.ProjectDir);
             break;
         case "UserControl2":
             if ((!File.Exists(Up.ProjectDir + "\\genes.fasta")) ||
                 (File.Exists(Up.ProjectDir + "\\genes.fasta") && (Up.FastaFile != "")))
             {
                 FastaParser parser = new FastaParser();
                 try
                 {
                     Up.QuerySequences = parser.Parse(Up.FastaFile).ToList();
                 }
                 catch
                 {
                     FatalErrorDialog("Error parsing FASTA file. Please confirm that the input file is in FASTA format. If the problem persists file a bug report at blip.codeplex.com.  The application will now be closed.");
                 }
                 File.Copy(Up.FastaFile, Up.ProjectDir + "\\genes.fasta", true);
             }
             break;
         case "UserControl3":
             break;
         case "UserControl4":
             UserControl4 uc4 = (CurrentControl as UserControl4);
             BlastUtil.RecordBlastThresholds(Up, uc4, ((ComboBoxItem)uc4.BlastProgram.SelectedItem).Content.ToString(), uc4.BlastDatabase.SelectedItem.ToString(), uc4.BlastAlgorithm.SelectedItem.ToString());
             /*
             MessageBox.Show(String.Format("Recorded Parameters:\n{0}\n{1}\n{2}\n{3}\n{4}\n{5}\n{6}\n{7}",
                     Up.BlastProgram,
                     Up.BlastDatabase,
                     Up.BlastGeneticCode, 
                     Up.BlastAlgorithm, 
                     Up.BlastMaxEvalue, 
                     Up.BlastMaxNumHits, 
                     Up.BlastMinPercentIdentity, 
                     Up.BlastMinPercentQueryCoverage
                     ));
             */
             LaunchBlastPipeline(Up.ProjectDir + "\\genes.fasta");
             break;
         case "UserControl5":
             LogMessage("Set Pivot parameters.\r\n");
             break;
         case "UserControl6":
             UserControl6 uc6 = (CurrentControl as UserControl6);
             //Pivot.RecordPivotParameters(Up, uc6.CollectionNameBox.Text, uc6.CollectionTitleBox.Text);
             Pivot.RecordPivotParameters(Up, "blip", uc6.CollectionTitleBox.Text);
             break;
         case "UserControl7":
             break;
         case "UserControl8":
             UserControl8 uc8 = (CurrentControl as UserControl8);
             // progressBar1.Maximum = Up.QuerySequences.Count();
             // progressBar1.Minimum = 0;
             // progressBar1.Value = 0;
             uc8.SaveImagePreviewState();
             res = WriteCollection();
             break;
         case "UserControl9":
             UserControl9 uc9 = (CurrentControl as UserControl9);
             if (uc9.createProject.IsChecked == true)
             {
                 Debug.WriteLine("NEW");
                 UserControls.Clear();
                 UserControl0 uc0 = new UserControl0(Up);
                 UserControls.Add(uc0);
                 UserControl9 c9 = new UserControl9(Up);
                 UserControls.Add(c9);
                 UserControl1 uc1 = new UserControl1(Up);
                 UserControls.Add(uc1);
                 UserControl2 uc2 = new UserControl2(Up);
                 UserControls.Add(uc2);
                 //UserControl3 uc3 = new UserControl3(Up);
                 //UserControls.Add(uc3);
                 UserControl6 c6 = new UserControl6(Up);
                 UserControls.Add(c6);
                 UserControl4 c4 = new UserControl4(Up);
                 UserControls.Add(c4);
                 UserControl5 uc5 = new UserControl5(Up);
                 UserControls.Add(uc5);
                 UserControl8 c8 = new UserControl8(Up);
                 UserControls.Add(c8);
                 UserControl7 uc7 = new UserControl7(Up);
                 UserControls.Add(uc7);
             }
             if (uc9.loadProject.IsChecked == true)
             {
                 UserControls.Clear();
                 UserControl0 uc0 = new UserControl0(Up);
                 UserControls.Add(uc0);
                 UserControl9 c9 = new UserControl9(Up);
                 UserControls.Add(c9);
                 UserControl10 c10 = new UserControl10(Up);
                 UserControls.Add(c10);
                 UserControl11 c11 = new UserControl11(Up);
                 UserControls.Add(c11);
             }
             break;
         case "UserControl10":
             UserControl10 uc10 = (CurrentControl as UserControl10);
             Debug.WriteLine("UC10");
             
             
             Action<object> action = (object obj) =>
             {
                 StartWebServer("/", Up.CxmlDir, Up.WebServerPort);
             };
             Task t1 = new Task(action, "BLiP_WS");
             t1.Start();
             Previous_Button.IsEnabled = false;
             Next_Button.IsEnabled = false;
             Finish_Button.IsEnabled = true;
             break;
         default:
             break;
     }
 }